Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.09G007900 Carya illinoinensis HOM05D007410 ORTHO05D009500 4.2e-91 340.1 742 100.0
QL02p025248 Quercus lobata HOM05D007410 ORTHO05D009500 5.2e-41 173.7 190 55.3
Haze_19526 Corylus avellana HOM05D007410 ORTHO05D009500 2.0e-40 171.8 142 64.8
Cfa016527 Carpinus fangiana HOM05D007410 ORTHO05D009500 5.8e-40 170.2 142 64.1
MD14G1014400 Malus domestica HOM05D007410 ORTHO05D009500 1.5e-32 145.6 194 49.5
Prupe.7G119000 Prunus persica HOM05D007410 ORTHO05D009500 1.5e-32 145.6 261 40.6
TAR365G0607 Trochodendron aralioides HOM05D007410 ORTHO05D009500 3.9e-28 131.0 145 55.2
MD12G1016300 Malus domestica HOM05D007410 ORTHO05D009500 5.6e-27 127.1 193 43.0
Dinv34010 Davidia involucrata HOM05D007410 ORTHO05D009500 9.6e-27 126.3 192 43.8
CSS0026121 Camellia sinensis var. sinensis HOM05D007410 ORTHO05D009500 2.4e-25 121.7 145 51.7
RcHm_v2.0_Chr3g0471971 Rosa chinensis HOM05D007410 ORTHO05D009500 1.5e-24 119.0 194 44.8
FAN02G1401 Fragaria x ananassa HOM05D007410 ORTHO05D009500 2.1e-21 108.6 170 47.1
FvH4_6g17750 Fragaria vesca HOM05D007410 ORTHO05D009500 2.3e-20 105.1 170 45.9
FAN14G2442 Fragaria x ananassa HOM05D007410 ORTHO05D009500 2.3e-20 105.1 170 45.9
FAN05G1927 Fragaria x ananassa HOM05D007410 ORTHO05D009500 3.9e-20 104.4 105 59.0
Hma1.2p1_0084F.1_g043130 Hydrangea macrophylla HOM05D007410 ORTHO05D009500 4.3e-19 100.9 81 66.7
Eucgr.A01557 Eucalyptus grandis HOM05D007410 ORTHO05D009500 9.6e-19 99.8 193 38.9
Rhsim03G0082200 Rhododendron simsii HOM05D007410 ORTHO05D009500 1.3e-18 99.4 145 48.3
TWI60G0552 Tripterygium wilfordii HOM05D007410 ORTHO05D009500 2.8e-18 98.2 142 44.4
Duzib093G0520 Durio zibethinus HOM05D007410 ORTHO05D009500 4.0e-17 94.4 144 41.7
FAN09G1720 Fragaria x ananassa HOM05D007410 ORTHO05D009500 4.0e-17 94.4 107 53.3
Atru.chr12.1030 Acer truncatum HOM05D007410 ORTHO05D009500 9.0e-17 93.2 85 62.4
PGR004G1775 Punica granatum HOM05D007410 ORTHO05D009500 7.6e-16 90.1 148 43.2
Ciclev10033972m.g Citrus clementina HOM05D007410 ORTHO05D009500 1.7e-15 89.0 123 42.3
COL.COLO4_29826 Corchorus olitorius HOM05D007410 ORTHO05D009500 3.8e-15 87.8 185 36.2
Nn8g39918 Nelumbo nucifera HOM05D007410 ORTHO05D009500 6.5e-15 87.0 83 59.0
CANSAT80G0494 Cannabis sativa HOM05D007410 ORTHO05D009500 1.9e-14 85.5 144 41.7
Sc18g0006010 Simmondsia chinensis HOM05D007410 ORTHO05D009500 5.5e-14 84.0 84 53.6
Carub.0006s1061 Capsella rubella HOM05D007410 ORTHO05D009500 2.1e-13 82.0 163 38.0
Aa31LG3G15130 Aethionema arabicum HOM05D007410 ORTHO05D009500 2.7e-13 81.6 169 33.7
Dinv39608 Davidia involucrata HOM05D007410 ORTHO05D009500 6.0e-13 80.5 150 62.7
CARHR201020 Cardamine hirsuta HOM05D007410 ORTHO05D009500 1.0e-12 79.7 170 34.1
DCAR_013956 Daucus carota HOM05D007410 ORTHO05D009500 1.3e-12 79.3 116 39.7
SHI27720 Sapria himalayana HOM05D007410 ORTHO05D009500 1.3e-12 79.3 95 48.4
Sed0018174 Sechium edule HOM05D007410 ORTHO05D009500 5.1e-12 77.4 145 41.4
Aqoxy1G00955 Aquilegia oxysepala HOM05D007410 ORTHO05D009500 8.7e-12 76.6 191 33.5
DCAR_020784 Daucus carota HOM05D007410 ORTHO05D009500 1.1e-11 76.3 85 44.7
Sp6g31520 Schrenkiella parvula HOM05D007410 ORTHO05D009500 1.1e-11 76.3 191 31.4
EL10Ac1g00861 Beta vulgaris HOM05D007410 ORTHO05D009500 3.3e-11 74.7 166 31.9
AUR62004183 Chenopodium quinoa HOM05D007410 ORTHO05D009500 3.3e-11 74.7 154 35.1
Potri.010G249800 Populus trichocarpa HOM05D007410 ORTHO05D009500 5.7e-11 73.9 189 36.0
AT5G12100 Arabidopsis thaliana HOM05D007410 ORTHO05D009500 2.1e-10 72.0 193 33.7
BolC9t59308H Brassica oleracea HOM05D007410 ORTHO05D009500 2.8e-10 71.6 169 31.4
Manes.09G058000 Manihot esculenta HOM05D007410 ORTHO05D009500 2.8e-10 71.6 143 37.8
CsaV3_3G016400 Cucumis sativus L. HOM05D007410 ORTHO05D009500 3.7e-10 71.2 213 31.5
ClCG05G007520 Citrullus lanatus HOM05D007410 ORTHO05D009500 8.2e-10 70.1 150 34.0
Atru.BG.129.p Acer truncatum HOM05D007410 ORTHO05D009500 1.4e-09 69.3 75 54.7
BcaNung06328 Brassica carinata HOM05D007410 ORTHO05D009500 1.8e-09 68.9 194 33.0
Gohir.D01G198900 Gossypium hirsutum HOM05D007410 ORTHO05D009500 2.4e-09 68.6 141 38.3
Gorai.002G243300 Gossypium raimondii HOM05D007410 ORTHO05D009500 2.4e-09 68.6 141 38.3
MELO3C006839.2 Cucumis melo HOM05D007410 ORTHO05D009500 3.1e-09 68.2 203 31.0
Nitab4.5_0005621g0120 Nicotiana tabacum HOM05D007410 ORTHO05D009500 4.1e-09 67.8 177 58.8
A10p25700 Brassica napus HOM05D007410 ORTHO05D009500 6.9e-09 67.0 129 34.9
AUR62013683 Chenopodium quinoa HOM05D007410 ORTHO05D009500 1.2e-08 66.2 83 42.2
Lj9E304T4 Lonicera japonica HOM05D007410 ORTHO05D009500 2.0e-08 65.5 141 36.9
Nitab4.5_0026813g0010 Nicotiana tabacum HOM05D007410 ORTHO05D009500 2.0e-08 65.5 177 59.3
Lj1g0017625 Lotus japonicus HOM05D007410 ORTHO05D009500 2.6e-08 65.1 86 47.7
C09p64770 Brassica napus HOM05D007410 ORTHO05D009500 5.9e-08 63.9 129 33.3
BraA10t44635Z Brassica rapa HOM05D007410 ORTHO05D009500 5.9e-08 63.9 172 32.6
Migut.J00989 Erythranthe guttata HOM05D007410 ORTHO05D009500 5.9e-08 63.9 82 48.8
Gohir.A01G210000 Gossypium hirsutum HOM05D007410 ORTHO05D009500 1.0e-07 63.2 141 37.6
Oeu023854.1 Olea europaea HOM05D007410 ORTHO05D009500 1.0e-07 63.2 123 38.2
Cc06_g05130 Coffea canephora HOM05D007410 ORTHO05D009500 2.9e-07 61.6 122 41.0
FAN09G0790 Fragaria x ananassa HOM05D007410 ORTHO05D009500 2.9e-07 61.6 54 55.6
PGSC0003DMG400004719 Solanum tuberosum HOM05D007410 ORTHO05D009500 3.8e-07 61.2 148 62.2
Sabra10G0194300 Salix brachista HOM05D001909 ORTHO05D007079 8.4e-07 60.1 52 57.7
Nitab4.5_0001290g0100 Nicotiana tabacum HOM05D007410 ORTHO05D009500 2.5e-06 58.5 131 38.9
Phvul.001G185900 Phaseolus vulgaris HOM05D007410 ORTHO05D009500 2.5e-06 58.5 132 35.6
Atru.chr12.1036 Acer truncatum HOM05D007410 ORTHO05D009500 4.2e-06 57.8 49 63.3
Oeu058028.1 Olea europaea HOM05D007410 ORTHO05D009500 4.2e-06 57.8 80 45.0
VMungo1383G0444 Vigna mungo HOM05D007410 ORTHO05D009500 4.2e-06 57.8 133 33.8
CAN.G575.91 Capsicum annuum HOM05D007410 ORTHO05D009500 7.2e-06 57.0 53 52.8
Cpa.g.sc117.70 Carica papaya HOM05D007410 ORTHO05D009500 9.3e-06 56.6 48 64.6


User provided reference genes

Program Settings