Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.09G006800 Carya illinoinensis HOM05D003590 ORTHO05D004290 2.6e-40 168.3 87 100.0
CiPaw.01G172800 Carya illinoinensis HOM05D003590 ORTHO05D004290 2.1e-21 105.5 67 86.6
Cfa015230 Carpinus fangiana HOM05D003590 ORTHO05D004290 3.5e-21 104.8 67 86.6
CANSAT64G0301 Cannabis sativa HOM05D003590 ORTHO05D004290 1.0e-20 103.2 67 85.1
MELO3C017774.2 Cucumis melo HOM05D003590 ORTHO05D004290 1.0e-20 103.2 67 85.1
CsaV3_4G002670 Cucumis sativus L. HOM05D003590 ORTHO05D004290 1.0e-20 103.2 67 85.1
MD17G1177400 Malus domestica HOM05D003590 ORTHO05D004290 1.0e-20 103.2 75 77.3
Eucgr.A00018 Eucalyptus grandis HOM05D003590 ORTHO05D004290 1.7e-20 102.4 67 83.6
Glyma.11G124800 Glycine max HOM05D003590 ORTHO05D004290 2.3e-20 102.1 67 83.6
Glyma.12G049400 Glycine max HOM05D003590 ORTHO05D004290 2.3e-20 102.1 67 83.6
Phvul.008G099200 Phaseolus vulgaris HOM05D003590 ORTHO05D004290 3.0e-20 101.7 67 85.1
ClCG07G015120 Citrullus lanatus HOM05D003590 ORTHO05D004290 3.9e-20 101.3 67 83.6
Lj3g0023284 Lotus japonicus HOM05D003590 ORTHO05D004290 3.9e-20 101.3 67 83.6
CiPaw.02G102900 Carya illinoinensis HOM05D003590 ORTHO05D004290 5.1e-20 100.9 67 82.1
Ca_20810_v3 Cicer arietinum L. HOM05D003590 ORTHO05D004290 5.1e-20 100.9 67 83.6
Dinv33190 Davidia involucrata HOM05D003590 ORTHO05D004290 5.1e-20 100.9 67 83.6
Sed0014148 Sechium edule HOM05D003590 ORTHO05D004290 5.1e-20 100.9 67 82.1
VMungo1383G1305 Vigna mungo HOM05D003590 ORTHO05D004290 5.1e-20 100.9 67 83.6
Gohir.A02G091600 Gossypium hirsutum HOM05D003590 ORTHO05D004290 6.6e-20 100.5 67 82.1
Gohir.D02G109000 Gossypium hirsutum HOM05D003590 ORTHO05D004290 6.6e-20 100.5 67 82.1
Gorai.005G124600 Gossypium raimondii HOM05D003590 ORTHO05D004290 6.6e-20 100.5 67 82.1
Prupe.1G203200 Prunus persica HOM05D003590 ORTHO05D004290 6.6e-20 100.5 67 82.1
Sed0008844 Sechium edule HOM05D003590 ORTHO05D004290 6.6e-20 100.5 67 82.1
Duzib268G1650 Durio zibethinus HOM05D003590 ORTHO05D004290 8.6e-20 100.1 67 82.1
MD00G1019200 Malus domestica HOM05D003590 ORTHO05D004290 8.6e-20 100.1 67 82.1
COL.COLO4_10136 Corchorus olitorius HOM05D003590 ORTHO05D004290 1.1e-19 99.8 67 82.1
Medtr4g068210 Medicago truncatula HOM05D003590 ORTHO05D004290 1.1e-19 99.8 67 82.1
Psat7g208480 Pisum sativum HOM05D003590 ORTHO05D004290 1.1e-19 99.8 67 82.1
TAR362G0082 Trochodendron aralioides HOM05D003590 ORTHO05D004290 1.1e-19 99.8 67 82.1
Actinidia27105 Actinidia chinensis HOM05D003590 ORTHO05D004290 1.5e-19 99.4 67 82.1
CSS0039108 Camellia sinensis var. sinensis HOM05D003590 ORTHO05D004290 1.5e-19 99.4 84 71.4
Dinv29086 Davidia involucrata HOM05D003590 ORTHO05D004290 1.9e-19 99.0 67 82.1
Potri.006G123600 Populus trichocarpa HOM05D003590 ORTHO05D004290 1.9e-19 99.0 67 80.6
RcHm_v2.0_Chr2g0122441 Rosa chinensis HOM05D003590 ORTHO05D004290 1.9e-19 99.0 67 80.6
vmacro00650 Vaccinium macrocarpon HOM05D003590 ORTHO05D004290 1.9e-19 99.0 65 84.6
vmacro00679 Vaccinium macrocarpon HOM05D003590 ORTHO05D004290 1.9e-19 99.0 65 84.6
Aqoxy2G04149 Aquilegia oxysepala HOM05D003590 ORTHO05D004290 2.5e-19 98.6 67 82.1
GSVIVG01019065001 Vitis vinifera HOM05D003590 ORTHO05D004290 3.3e-19 98.2 67 82.1
Eucgr.B01427 Eucalyptus grandis HOM05D003590 ORTHO05D004290 4.3e-19 97.8 67 80.6
Eucgr.K00001 Eucalyptus grandis HOM05D003590 ORTHO05D004290 4.3e-19 97.8 67 80.6
TPR.G34214 Trifolium pratense HOM05D003590 ORTHO05D004290 4.3e-19 97.8 67 80.6
Potri.016G099400 Populus trichocarpa HOM05D003590 ORTHO05D004290 5.6e-19 97.4 67 79.1
RcHm_v2.0_Chr6g0285711 Rosa chinensis HOM05D003590 ORTHO05D004290 5.6e-19 97.4 67 79.1
Ciclev10021047m.g Citrus clementina HOM05D003590 ORTHO05D004290 7.3e-19 97.1 67 80.6
FvH4_2g19990 Fragaria vesca HOM05D003590 ORTHO05D004290 7.3e-19 97.1 67 79.1
FAN15G3511 Fragaria x ananassa HOM05D003590 ORTHO05D004290 7.3e-19 97.1 67 79.1
FAN24G1875 Fragaria x ananassa HOM05D003590 ORTHO05D004290 7.3e-19 97.1 67 79.1
FAN27G0950 Fragaria x ananassa HOM05D003590 ORTHO05D004290 7.3e-19 97.1 67 79.1
TWI36G0235 Tripterygium wilfordii HOM05D003590 ORTHO05D004290 7.3e-19 97.1 67 80.6
TWI36G1101 Tripterygium wilfordii HOM05D003590 ORTHO05D004290 7.3e-19 97.1 67 80.6
GSVIVG01038103001 Vitis vinifera HOM05D003590 ORTHO05D004290 7.3e-19 97.1 84 69.0
Thecc.04G169500 Theobroma cacao HOM05D003590 ORTHO05D004290 9.5e-19 96.7 67 79.1
vmacro19565 Vaccinium macrocarpon HOM05D003590 ORTHO05D004290 9.5e-19 96.7 67 79.1
Cpa.g.sc9.339 Carica papaya HOM05D003590 ORTHO05D004290 1.2e-18 96.3 66 81.8
Dinv15385 Davidia involucrata HOM05D003590 ORTHO05D004290 1.2e-18 96.3 67 79.1
Dinv15392 Davidia involucrata HOM05D003590 ORTHO05D004290 1.2e-18 96.3 67 79.1
Duzib151G0409 Durio zibethinus HOM05D003590 ORTHO05D004290 1.2e-18 96.3 67 77.6
Rhsim05G0167200 Rhododendron simsii HOM05D003590 ORTHO05D004290 1.2e-18 96.3 67 79.1
Duzib212G0521 Durio zibethinus HOM05D003590 ORTHO05D004290 1.6e-18 95.9 66 78.8
ATR0743G202 Amborella trichopoda HOM05D003590 ORTHO05D004290 2.1e-18 95.5 66 80.3
Lsat_1_v5_gn_9_37260 Lactuca sativa HOM05D003590 ORTHO05D004290 2.8e-18 95.1 67 77.6
MBI17_g21475_MAGBIO Magnolia biondii HOM05D003590 ORTHO05D004290 2.8e-18 95.1 66 81.8
Zm00001eb365760 Zea mays HOM05D003590 ORTHO05D004290 2.8e-18 95.1 66 80.3
arahy.Tifrunner.gnm1.ann1.SY3MF3 Arachis hypogaea HOM05D003590 ORTHO05D004290 3.6e-18 94.7 67 79.1
arahy.Tifrunner.gnm1.ann1.YL8857 Arachis hypogaea HOM05D003590 ORTHO05D004290 3.6e-18 94.7 67 79.1
MBI07_g22611_MAGBIO Magnolia biondii HOM05D003590 ORTHO05D004290 3.6e-18 94.7 66 80.3
PGR119G1440 Punica granatum HOM05D003590 ORTHO05D004290 3.6e-18 94.7 67 77.6
FAN26G3423 Fragaria x ananassa HOM05D003590 ORTHO05D004290 4.7e-18 94.4 67 77.6
Zm00001eb144840 Zea mays HOM05D003590 ORTHO05D004290 4.7e-18 94.4 66 80.3
DCAR_023942 Daucus carota HOM05D003590 ORTHO05D004290 6.2e-18 94.0 67 77.6
ECA246G2345 Erigeron canadensis HOM05D003590 ORTHO05D004290 6.2e-18 94.0 67 76.1
HanXRQChr05g0149811 Helianthus annuus HOM05D003590 ORTHO05D004290 6.2e-18 94.0 67 76.1
Lalb_Chr19g0138461 Lupinus albus HOM05D003590 ORTHO05D004290 6.2e-18 94.0 67 77.6
Nn1g09673 Nelumbo nucifera HOM05D003590 ORTHO05D004290 6.2e-18 94.0 66 78.8
DCAR_002151 Daucus carota HOM05D003590 ORTHO05D004290 8.1e-18 93.6 67 77.6
HanXRQChr16g0500391 Helianthus annuus HOM05D003590 ORTHO05D004290 8.1e-18 93.6 67 74.6
Os01g0895100 Oryza sativa ssp. japonica HOM05D003590 ORTHO05D004290 8.1e-18 93.6 66 78.8
Lsat_1_v5_gn_8_26121 Lactuca sativa HOM05D003590 ORTHO05D004290 1.1e-17 93.2 67 76.1
Manes.11G128000 Manihot esculenta HOM05D003590 ORTHO05D004290 1.1e-17 93.2 67 76.1
Atru.chr4.1363 Acer truncatum HOM05D003590 ORTHO05D004290 1.4e-17 92.8 67 76.1
Lj3A152T20 Lonicera japonica HOM05D003590 ORTHO05D004290 1.4e-17 92.8 67 76.1
CDE08G0825 Ceratophyllum demersum HOM05D003590 ORTHO05D004290 1.8e-17 92.4 66 77.3
unitig_52.g17513 Utricularia gibba HOM05D003590 ORTHO05D004290 1.8e-17 92.4 67 74.6
Actinidia03270 Actinidia chinensis HOM05D003590 ORTHO05D004290 2.4e-17 92.0 66 78.8
Peaxi162Scf00074g01833 Petunia axillaris HOM05D003590 ORTHO05D004290 2.4e-17 92.0 67 76.1
PGR042G3827 Punica granatum HOM05D003590 ORTHO05D004290 2.4e-17 92.0 67 74.6
SalBow6G6444 Salvia bowleyana HOM05D003590 ORTHO05D004290 2.4e-17 92.0 67 77.6
Gohir.A10G141800 Gossypium hirsutum HOM05D003590 ORTHO05D004290 3.1e-17 91.7 67 73.1
Gohir.D10G124700 Gossypium hirsutum HOM05D003590 ORTHO05D004290 3.1e-17 91.7 67 73.1
Gorai.011G137800 Gossypium raimondii HOM05D003590 ORTHO05D004290 3.1e-17 91.7 67 73.1
Nn7g37627 Nelumbo nucifera HOM05D003590 ORTHO05D004290 3.1e-17 91.7 66 78.8
Nitab4.5_0009796g0040 Nicotiana tabacum HOM05D003590 ORTHO05D004290 4.0e-17 91.3 67 74.6
Cc09_g03870 Coffea canephora HOM05D003590 ORTHO05D004290 5.2e-17 90.9 67 74.6
Lalb_Chr07g0192831 Lupinus albus HOM05D003590 ORTHO05D004290 5.2e-17 90.9 67 74.6
Solyc11g008990.2 Solanum lycopersicum HOM05D003590 ORTHO05D004290 5.2e-17 90.9 67 74.6
Sopen11g004770 Solanum pennellii HOM05D003590 ORTHO05D004290 5.2e-17 90.9 67 74.6
PGSC0003DMG400016231 Solanum tuberosum HOM05D003590 ORTHO05D004290 5.2e-17 90.9 67 74.6
HPP92_009006 Vanilla planifolia HOM05D003590 ORTHO05D004290 8.9e-17 90.1 66 75.8
CAN.G1177.3 Capsicum annuum HOM05D003590 ORTHO05D004290 1.2e-16 89.7 67 73.1
PSO339G4307 Papaver somniferum HOM05D003590 ORTHO05D004290 1.2e-16 89.7 66 74.2
PSO384G2196 Papaver somniferum HOM05D003590 ORTHO05D004290 1.2e-16 89.7 66 74.2
Glyma.18G243700 Glycine max HOM05D003590 ORTHO05D004290 1.5e-16 89.4 67 71.6
Sc06g0005010 Simmondsia chinensis HOM05D003590 ORTHO05D004290 1.5e-16 89.4 67 71.6
Ah.06g195400 Amaranthus hybridus HOM05D003590 ORTHO05D004290 2.0e-16 89.0 67 73.1
MSTRG.8205 Avicennia marina HOM05D003590 ORTHO05D004290 2.0e-16 89.0 67 73.1
Nitab4.5_0004390g0060 Nicotiana tabacum HOM05D003590 ORTHO05D004290 2.0e-16 89.0 67 71.6
THA.LOC104805702 Tarenaya hassleriana HOM05D003590 ORTHO05D004290 2.0e-16 89.0 67 73.1
Oeu064494.2 Olea europaea HOM05D003590 ORTHO05D004290 2.6e-16 88.6 67 73.1
Actinidia06797 Actinidia chinensis HOM05D003590 ORTHO05D004290 3.4e-16 88.2 66 75.8
AUR62000295 Chenopodium quinoa HOM05D003590 ORTHO05D004290 3.4e-16 88.2 67 71.6
Phvul.008G052900 Phaseolus vulgaris HOM05D003590 ORTHO05D004290 5.8e-16 87.4 67 70.1
SGA_v2.0_scaffold122G33190 Striga asiatica HOM05D003590 ORTHO05D004290 7.6e-16 87.0 67 70.1
AL2G20260 Arabidopsis lyrata HOM05D003590 ORTHO05D004290 1.3e-15 86.3 67 71.6
BcaB05g24099 Brassica carinata HOM05D003590 ORTHO05D004290 1.3e-15 86.3 67 71.6
Manes.04G049785 Manihot esculenta HOM05D003590 ORTHO05D004290 1.3e-15 86.3 65 75.4
Sp5g19930 Schrenkiella parvula HOM05D003590 ORTHO05D004290 1.3e-15 86.3 67 71.6
SGA_v2.0_scaffold62G21494 Striga asiatica HOM05D004200 ORTHO05D004996 1.3e-15 86.3 80 66.2
AT1G65260 Arabidopsis thaliana HOM05D003590 ORTHO05D004290 4.9e-15 84.3 67 70.1
C02p21260 Brassica napus HOM05D003590 ORTHO05D004290 4.9e-15 84.3 67 70.1
BolC2t08266H Brassica oleracea HOM05D003590 ORTHO05D004290 4.9e-15 84.3 67 70.1
Carub.0006s2551 Capsella rubella HOM05D003590 ORTHO05D004290 4.9e-15 84.3 67 70.1
Pp3c7_13570 Physcomitrium patens HOM05D003590 ORTHO05D004290 4.9e-15 84.3 67 67.2
Rhsim09G0012200 Rhododendron simsii HOM05D003590 ORTHO05D004290 4.9e-15 84.3 94 58.5
AUR62006641 Chenopodium quinoa HOM05D003590 ORTHO05D004290 6.4e-15 84.0 82 59.8
CARHR056900 Cardamine hirsuta HOM05D003590 ORTHO05D004290 8.4e-15 83.6 67 68.7
Migut.F01864 Erythranthe guttata HOM05D003590 ORTHO05D004290 1.1e-14 83.2 83 60.2
A02p13120 Brassica napus HOM05D003590 ORTHO05D004290 1.4e-14 82.8 67 68.7
BraA02t06368Z Brassica rapa HOM05D003590 ORTHO05D004290 1.4e-14 82.8 67 68.7
Aa31LG2G2380 Aethionema arabicum HOM05D003590 ORTHO05D004290 1.9e-14 82.4 67 68.7
Thhalv10018833m.g Eutrema salsugineum HOM05D003590 ORTHO05D004290 1.9e-14 82.4 67 68.7
Pp3c2_28040 Physcomitrium patens HOM05D003590 ORTHO05D004290 1.9e-14 82.4 67 67.2
RcHm_v2.0_Chr5g0028111 Rosa chinensis HOM05D003590 ORTHO05D004290 1.9e-14 82.4 65 76.9
SEGI_22814 Sequoiadendron giganteum HOM05D003590 ORTHO05D004290 2.4e-14 82.0 67 64.2
CANSAT54G1837 Cannabis sativa HOM05D003590 ORTHO05D004290 3.2e-14 81.6 67 68.7
PSO478G1249 Papaver somniferum HOM05D003590 ORTHO05D004290 4.2e-14 81.3 73 65.8
BcaC03g14688 Brassica carinata HOM05D003590 ORTHO05D004290 7.1e-14 80.5 67 67.2
Lj1g0027383 Lotus japonicus HOM05D003590 ORTHO05D004290 9.2e-14 80.1 67 64.2
Mapoly0058s0048 Marchantia polymorpha HOM05D003590 ORTHO05D004290 1.2e-13 79.7 65 64.6
EL10Ac4g10000 Beta vulgaris HOM05D003590 ORTHO05D004290 2.7e-13 78.6 93 52.7
PSO782G1591 Papaver somniferum HOM05D003590 ORTHO05D004290 3.5e-13 78.2 73 64.4
SMO115G0200 Selaginella moellendorffii HOM05D003590 ORTHO05D004290 3.5e-13 78.2 73 58.9
Haze_01407 Corylus avellana HOM05D003590 ORTHO05D004290 7.8e-13 77.0 128 45.3
AagrBONN_evm.TU.Sc2ySwM_228.379 Anthoceros agrestis HOM05D003590 ORTHO05D004290 5.1e-12 74.3 67 61.2
FvH4_3g16870 Fragaria vesca HOM05D003590 ORTHO05D004290 8.7e-12 73.6 65 69.2
FAN11G2382 Fragaria x ananassa HOM05D003590 ORTHO05D004290 8.7e-12 73.6 65 69.2
FAN16G0742 Fragaria x ananassa HOM05D003590 ORTHO05D004290 8.7e-12 73.6 65 69.2
Sabra06G0097800 Salix brachista HOM05D003590 ORTHO05D004290 2.5e-11 72.0 132 40.2
Hund21913 Selenicereus undatus HOM05D003590 ORTHO05D004290 3.3e-11 71.6 59 67.8
CBR_g79424 Chara braunii HOM05D003590 ORTHO05D004290 5.6e-11 70.9 64 59.4
Sabra16G0098800 Salix brachista HOM05D003590 ORTHO05D004290 5.6e-11 70.9 123 42.3
CSS0007792 Camellia sinensis var. sinensis HOM05D003590 ORTHO05D004290 9.6e-11 70.1 58 69.0
CSS0032359 Camellia sinensis var. sinensis HOM05D003590 ORTHO05D024713 1.3e-10 69.7 41 85.4
CBR_g29875 Chara braunii HOM05D003594 ORTHO05D000497 8.1e-10 67.0 64 56.2
Cpa.g.sc123.34 Carica papaya HOM05D003590 ORTHO05D004290 1.4e-09 66.2 41 82.9
SHI32795 Sapria himalayana HOM05D003590 ORTHO05D004290 1.8e-09 65.9 62 59.7
Hund07359 Selenicereus undatus HOM05D003590 ORTHO05D004290 3.1e-09 65.1 41 80.5
Lj1A579G41 Lonicera japonica HOM05D003590 ORTHO05D004290 4.0e-09 64.7 41 78.0
Oeu010165.1 Olea europaea HOM05D003590 ORTHO05D004290 5.3e-09 64.3 41 75.6
QL10p052769 Quercus lobata HOM05D003590 ORTHO05D004290 9.0e-09 63.5 46 73.9
Zm00001eb122710 Zea mays HOM05D003590 ORTHO05D024713 9.0e-09 63.5 48 75.0
Zm00001eb346500 Zea mays HOM05D003590 ORTHO05D024713 2.2e-07 58.9 41 80.5
MCO10G215 Micromonas commoda HOM05D003590 ORTHO05D004290 1.4e-06 56.2 65 50.8
Pp3c10_14840 Physcomitrium patens HOM05D003590 ORTHO05D004290 4.2e-06 54.7 67 49.3
Zm00001eb002340 Zea mays HOM05D003590 ORTHO05D024713 4.2e-06 54.7 37 81.1
FvH4_6g53380 Fragaria vesca HOM05D003590 ORTHO05D004290 9.3e-06 53.5 42 69.0


User provided reference genes

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