Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.09G005300 Carya illinoinensis HOM05D007206 ORTHO05D009176 7.6e-100 367.1 174 100.0
Haze_19480 Corylus avellana HOM05D007206 ORTHO05D009176 6.7e-72 274.2 162 77.8
QL07p041366 Quercus lobata HOM05D007206 ORTHO05D009176 2.4e-69 265.8 173 74.0
Cfa016483 Carpinus fangiana HOM05D007539 ORTHO05D009315 2.2e-67 259.2 153 79.1
Prupe.7G122800 Prunus persica HOM05D007206 ORTHO05D009176 4.8e-62 241.5 179 66.5
Hma1.2p1_0564F.1_g179170 Hydrangea macrophylla HOM05D007206 ORTHO05D009176 4.5e-60 235.0 167 68.3
Lalb_Chr25g0288781 Lupinus albus HOM05D007206 ORTHO05D009176 7.2e-58 227.6 176 61.9
Manes.09G048990 Manihot esculenta HOM05D007206 ORTHO05D009176 4.7e-57 224.9 174 58.0
ClCG10G019630 Citrullus lanatus HOM05D007206 ORTHO05D009176 1.8e-56 223.0 169 61.5
MELO3C009409.2 Cucumis melo HOM05D007206 ORTHO05D009176 3.0e-56 222.2 138 71.0
CsaV3_3G036450 Cucumis sativus L. HOM05D007206 ORTHO05D009176 3.0e-56 222.2 138 71.0
Glyma.19G188400 Glycine max HOM05D007206 ORTHO05D009176 3.9e-56 221.9 176 61.4
Potri.006G119100 Populus trichocarpa HOM05D007206 ORTHO05D009176 6.7e-56 221.1 175 61.1
Migut.J00478 Erythranthe guttata HOM05D007206 ORTHO05D009176 8.8e-56 220.7 160 59.4
RcHm_v2.0_Chr3g0471351 Rosa chinensis HOM05D007206 ORTHO05D009176 8.8e-56 220.7 160 64.4
Lsat_1_v5_gn_6_28201 Lactuca sativa HOM05D007206 ORTHO05D009176 1.5e-55 219.9 176 55.1
FvH4_6g17250 Fragaria vesca HOM05D007206 ORTHO05D009176 2.0e-55 219.5 167 61.1
FAN05G5006 Fragaria x ananassa HOM05D007206 ORTHO05D009176 2.6e-55 219.2 164 62.8
Sabra06G0093700 Salix brachista HOM05D007206 ORTHO05D009176 3.3e-55 218.8 173 59.0
Cc06_g04800 Coffea canephora HOM05D007206 ORTHO05D009176 5.7e-55 218.0 167 57.5
Glyma.03G188300 Glycine max HOM05D007206 ORTHO05D009176 5.7e-55 218.0 169 62.1
ECA233G5177 Erigeron canadensis HOM05D007206 ORTHO05D009176 9.7e-55 217.2 139 64.7
FAN05G2314 Fragaria x ananassa HOM05D007206 ORTHO05D009176 9.7e-55 217.2 164 62.2
Thecc.05G075700 Theobroma cacao HOM05D007206 ORTHO05D009176 1.3e-54 216.9 177 59.3
Lj1g0012469 Lotus japonicus HOM05D007206 ORTHO05D009176 2.2e-54 216.1 178 59.6
FAN14G2195 Fragaria x ananassa HOM05D007206 ORTHO05D009176 4.8e-54 214.9 167 59.9
Eucgr.K02418 Eucalyptus grandis HOM05D007206 ORTHO05D009176 1.1e-53 213.8 160 62.5
Actinidia32469 Actinidia chinensis HOM05D007206 ORTHO05D009176 1.4e-53 213.4 165 60.0
DCAR_017648 Daucus carota HOM05D007206 ORTHO05D009176 2.4e-53 212.6 161 59.6
HanXRQChr13g0400551 Helianthus annuus HOM05D007206 ORTHO05D009176 2.4e-53 212.6 159 57.2
Oeu017000.1 Olea europaea HOM05D007206 ORTHO05D009176 3.1e-53 212.2 174 56.9
Sed0016601 Sechium edule HOM05D007206 ORTHO05D009176 6.9e-53 211.1 160 59.4
Duzib093G2029 Durio zibethinus HOM05D007206 ORTHO05D009176 9.1e-53 210.7 169 59.8
SGA_v2.0_scaffold657G53380 Striga asiatica HOM05D007206 ORTHO05D009176 9.1e-53 210.7 140 62.9
MD14G1096900 Malus domestica HOM05D007206 ORTHO05D009176 1.2e-52 210.3 159 62.9
SalBow3G1834 Salvia bowleyana HOM05D007206 ORTHO05D009176 3.4e-52 208.8 166 56.6
Sopen01g017760 Solanum pennellii HOM05D007206 ORTHO05D009176 3.4e-52 208.8 159 57.9
TWI77G0103 Tripterygium wilfordii HOM05D007206 ORTHO05D009176 4.5e-52 208.4 163 58.3
VMungo1383G0088 Vigna mungo HOM05D007206 ORTHO05D009176 5.9e-52 208.0 168 58.9
PGSC0003DMG400012983 Solanum tuberosum HOM05D007206 ORTHO05D009176 7.7e-52 207.6 159 57.2
Solyc09g008590.4 Solanum lycopersicum HOM05D007206 ORTHO05D009176 1.0e-51 207.2 159 57.2
MD12G1102700 Malus domestica HOM05D007206 ORTHO05D009176 2.2e-51 206.1 158 60.1
CSS0049694 Camellia sinensis var. sinensis HOM05D007206 ORTHO05D009176 3.8e-51 205.3 134 69.4
TPR.G31671 Trifolium pratense HOM05D007206 ORTHO05D009176 3.8e-51 205.3 164 57.9
Ca_08938_v3 Cicer arietinum L. HOM05D007206 ORTHO05D009176 8.5e-51 204.1 167 58.1
Ca_30111_v3 Cicer arietinum L. HOM05D007206 ORTHO05D009176 8.5e-51 204.1 167 58.1
COL.COLO4_22256 Corchorus olitorius HOM05D007206 ORTHO05D009176 1.9e-50 203.0 178 54.5
Phvul.001G183600 Phaseolus vulgaris HOM05D007206 ORTHO05D009176 1.9e-50 203.0 163 57.7
Hund01087 Selenicereus undatus HOM05D007206 ORTHO05D009176 4.2e-50 201.8 167 56.3
ATR0580G453 Amborella trichopoda HOM05D007206 ORTHO05D009176 1.2e-49 200.3 176 56.8
MBI18_g24930_MAGBIO Magnolia biondii HOM05D007206 ORTHO05D009176 2.7e-49 199.1 151 61.6
Medtr7g102770 Medicago truncatula HOM05D007206 ORTHO05D009176 2.7e-49 199.1 162 58.6
Aqoxy1G01032 Aquilegia oxysepala HOM05D007206 ORTHO05D009176 4.7e-49 198.4 160 59.4
Ciclev10006960m.g Citrus clementina HOM05D007206 ORTHO05D009176 6.1e-49 198.0 178 55.1
CAN.G1759.3 Capsicum annuum HOM05D007206 ORTHO05D009176 3.9e-48 195.3 139 62.6
Lj2C124T14 Lonicera japonica HOM05D007206 ORTHO05D009176 3.9e-48 195.3 173 57.2
PSO063G5977 Papaver somniferum HOM05D007206 ORTHO05D009176 8.8e-48 194.1 164 53.7
Psat0s4599g0080 Pisum sativum HOM05D007206 ORTHO05D009176 2.0e-47 193.0 144 61.8
Sed0006266 Sechium edule HOM05D007206 ORTHO05D009176 5.7e-47 191.4 158 56.3
Cpa.g.sc5.124 Carica papaya HOM05D007206 ORTHO05D009176 2.8e-46 189.1 161 54.0
THA.LOC104826925 Tarenaya hassleriana HOM05D007206 ORTHO05D009176 4.8e-46 188.3 158 56.3
Gohir.D01G129600 Gossypium hirsutum HOM05D007206 ORTHO05D009176 1.4e-45 186.8 159 56.0
Atru.chr8.1702 Acer truncatum HOM05D007206 ORTHO05D009176 1.6e-44 183.3 159 51.6
Gorai.002G160400 Gossypium raimondii HOM05D007206 ORTHO05D009176 2.0e-44 183.0 167 53.9
Sc02g0001330 Simmondsia chinensis HOM05D007206 ORTHO05D009176 5.9e-44 181.4 166 50.6
AL3G21200 Arabidopsis lyrata HOM05D007206 ORTHO05D009176 5.0e-43 178.3 161 54.0
C03p43430 Brassica napus HOM05D007206 ORTHO05D009176 6.5e-43 177.9 165 49.7
BraA03t12750Z Brassica rapa HOM05D007206 ORTHO05D009176 6.5e-43 177.9 158 51.9
BcaC01g04253 Brassica carinata HOM05D007206 ORTHO05D009176 1.5e-42 176.8 165 49.7
BolC3t16614H Brassica oleracea HOM05D007206 ORTHO05D009176 1.5e-42 176.8 165 49.7
CARHR084450 Cardamine hirsuta HOM05D007206 ORTHO05D009176 1.5e-42 176.8 159 55.3
Aa31LG3G2410 Aethionema arabicum HOM05D007206 ORTHO05D009176 1.9e-42 176.4 162 52.5
Sp3g08280 Schrenkiella parvula HOM05D007206 ORTHO05D009176 2.5e-42 176.0 164 52.4
Thhalv10021649m.g Eutrema salsugineum HOM05D007206 ORTHO05D009176 1.2e-41 173.7 164 51.2
Carub.0003s0903 Capsella rubella HOM05D007206 ORTHO05D009176 1.6e-41 173.3 164 51.8
AT3G09925 Arabidopsis thaliana HOM05D007206 ORTHO05D009176 3.6e-41 172.2 164 52.4
HPP92_008498 Vanilla planifolia HOM05D007206 ORTHO05D009176 6.1e-41 171.4 175 46.3
A03p35770 Brassica napus HOM05D007206 ORTHO05D009176 5.2e-40 168.3 166 48.8
C05p58110 Brassica napus HOM05D007206 ORTHO05D009176 2.0e-39 166.4 167 47.9
BolC5t34468H Brassica oleracea HOM05D007206 ORTHO05D009176 2.0e-39 166.4 167 47.9
BcaB03g11581 Brassica carinata HOM05D007206 ORTHO05D009176 2.6e-39 166.0 165 48.5
AUR62022783 Chenopodium quinoa HOM05D007206 ORTHO05D009176 2.6e-39 166.0 171 46.8
A05p39080 Brassica napus HOM05D007206 ORTHO05D009176 1.7e-38 163.3 165 47.3
BraA05t22700Z Brassica rapa HOM05D007206 ORTHO05D009176 1.7e-38 163.3 165 47.3
CANSAT80G1624 Cannabis sativa HOM05D007206 ORTHO05D009176 2.2e-38 162.9 180 48.9
Peaxi162Scf01195g00005 Petunia axillaris HOM05D007206 ORTHO05D009176 3.7e-38 162.2 166 48.2
arahy.Tifrunner.gnm1.ann1.A01TPE Arachis hypogaea HOM05D007206 ORTHO05D009176 9.1e-37 157.5 116 62.9
AUR62043339 Chenopodium quinoa HOM05D007206 ORTHO05D009176 9.1e-37 157.5 165 44.8
arahy.Tifrunner.gnm1.ann1.06CJ1U Arachis hypogaea HOM05D007206 ORTHO05D009176 2.0e-36 156.4 116 62.1
EL10Ac9g22544 Beta vulgaris HOM05D007206 ORTHO05D009176 5.0e-35 151.8 166 45.8
Dinv35836 Davidia involucrata HOM05D007206 ORTHO05D009176 2.5e-34 149.4 110 63.6
DCAR_017650 Daucus carota HOM05D007206 ORTHO05D009176 6.3e-30 134.8 163 41.7
BcaC05g29720 Brassica carinata HOM05D007206 ORTHO05D009176 8.3e-30 134.4 141 46.8
PSO339G4243 Papaver somniferum HOM05D007206 ORTHO05D009176 8.3e-30 134.4 163 46.6
PSO063G3127 Papaver somniferum HOM05D007206 ORTHO05D009176 3.1e-29 132.5 164 45.1
FAN09G1747 Fragaria x ananassa HOM05D007206 ORTHO05D022624 3.5e-28 129.0 82 67.1
Zm00001eb022730 Zea mays HOM05D007206 ORTHO05D009176 1.1e-26 124.0 168 42.3
Eucgr.F02194 Eucalyptus grandis HOM05D007206 ORTHO05D009176 3.3e-26 122.5 123 48.0
Os10g0546100 Oryza sativa ssp. japonica HOM05D007206 ORTHO05D009176 4.2e-26 122.1 129 45.7
GSVIVG01033715001 Vitis vinifera HOM05D007206 ORTHO05D009176 2.2e-22 109.8 89 56.2
GSVIVG01033719001 Vitis vinifera HOM05D007206 ORTHO05D009176 2.2e-22 109.8 89 56.2
Lalb_Chr01g0018521 Lupinus albus HOM05D007206 ORTHO05D009176 4.1e-13 79.0 55 69.1
Lsat_1_v5_gn_2_124301 Lactuca sativa HOM05D005469 ORTHO05D001701 1.6e-12 77.0 168 30.4
Lalb_Chr01g0018511 Lupinus albus HOM05D007206 ORTHO05D009176 5.0e-11 72.0 55 58.2
ECA238G1751 Erigeron canadensis HOM05D005469 ORTHO05D001701 6.6e-11 71.6 171 30.4
HanXRQChr07g0203111 Helianthus annuus HOM05D005469 ORTHO05D001701 6.6e-11 71.6 167 31.1
ATR0174G015 Amborella trichopoda HOM05D005469 ORTHO05D001701 1.5e-10 70.5 176 30.7
Manes.10G009700 Manihot esculenta HOM05D005469 ORTHO05D001701 1.5e-10 70.5 153 32.7
ECA238G2582 Erigeron canadensis HOM05D005469 ORTHO05D001701 3.3e-10 69.3 172 29.1
HanXRQChr14g0459401 Helianthus annuus HOM05D005469 ORTHO05D001701 3.3e-10 69.3 164 31.1
CANSAT56G3078 Cannabis sativa HOM05D005469 ORTHO05D001701 5.6e-10 68.6 173 31.8
CANSAT56G4151 Cannabis sativa HOM05D005469 ORTHO05D001701 5.6e-10 68.6 173 30.6
Zm00001eb123470 Zea mays HOM05D005469 ORTHO05D001701 9.5e-10 67.8 140 30.0
CAN.G1268.13 Capsicum annuum HOM05D005469 ORTHO05D001701 1.2e-09 67.4 139 30.9
Nitab4.5_0000058g0190 Nicotiana tabacum HOM05D005469 ORTHO05D001701 2.1e-09 66.6 139 32.4
DCAR_024812 Daucus carota HOM05D005469 ORTHO05D001701 2.8e-09 66.2 169 30.8
QL08p063579 Quercus lobata HOM05D005469 ORTHO05D001701 2.8e-09 66.2 139 33.1
Nitab4.5_0003391g0070 Nicotiana tabacum HOM05D000087 ORTHO05D000793 3.6e-09 65.9 133 32.3
SalBow3G1256 Salvia bowleyana HOM05D005469 ORTHO05D001701 3.6e-09 65.9 147 33.3
Solyc05g052500.4 Solanum lycopersicum HOM05D000087 ORTHO05D000793 3.6e-09 65.9 138 30.4
Potri.010G185400 Populus trichocarpa HOM05D005469 ORTHO05D001701 4.7e-09 65.5 146 29.5
GSVIVG01032773001 Vitis vinifera HOM05D005469 ORTHO05D001701 4.7e-09 65.5 150 30.7
Lsat_1_v5_gn_2_124321 Lactuca sativa HOM05D005469 ORTHO05D001701 8.0e-09 64.7 138 31.2
Nitab4.5_0000666g0120 Nicotiana tabacum HOM05D005469 ORTHO05D001701 8.0e-09 64.7 139 30.2
Sopen05g031040 Solanum pennellii HOM05D005469 ORTHO05D001701 1.1e-08 64.3 165 26.7
CSS0028429 Camellia sinensis var. sinensis HOM05D005469 ORTHO05D001701 1.4e-08 63.9 142 33.1
PSO339G0551 Papaver somniferum HOM05D005469 ORTHO05D001701 1.4e-08 63.9 149 31.5
TWI73G0354 Tripterygium wilfordii HOM05D005469 ORTHO05D001701 1.4e-08 63.9 161 29.8
Lj1C959T17 Lonicera japonica HOM05D005469 ORTHO05D001701 2.3e-08 63.2 163 29.4
Peaxi162Scf00045g02525 Petunia axillaris HOM05D000087 ORTHO05D000793 2.3e-08 63.2 133 30.1
Nitab4.5_0000789g0080 Nicotiana tabacum HOM05D005469 ORTHO05D001701 3.1e-08 62.8 161 28.0
Eucgr.G03079 Eucalyptus grandis HOM05D005469 ORTHO05D001701 4.0e-08 62.4 163 27.6
Manes.07G132700 Manihot esculenta HOM05D005469 ORTHO05D001701 4.0e-08 62.4 164 29.3
TAR636G2944 Trochodendron aralioides HOM05D000080 ORTHO05D000053 4.0e-08 62.4 43 60.5
THA.LOC104802180 Tarenaya hassleriana HOM05D002284 ORTHO05D002427 5.2e-08 62.0 131 33.6
Aqoxy1G01324 Aquilegia oxysepala HOM05D005469 ORTHO05D001701 6.8e-08 61.6 140 32.9
Migut.F00654 Erythranthe guttata HOM05D005469 ORTHO05D001701 6.8e-08 61.6 166 30.1
MBI03_g21447_MAGBIO Magnolia biondii HOM05D005469 ORTHO05D001701 6.8e-08 61.6 152 30.9
MBI03_g43893_MAGBIO Magnolia biondii HOM05D005469 ORTHO05D001701 6.8e-08 61.6 104 33.7
SMO232G0054 Selaginella moellendorffii HOM05D007206 ORTHO05D009176 6.8e-08 61.6 128 30.5
Sopen06g016860 Solanum pennellii HOM05D005469 ORTHO05D001701 1.2e-07 60.8 162 29.6
PGSC0003DMG400027122 Solanum tuberosum HOM05D005469 ORTHO05D001701 1.2e-07 60.8 129 31.0
PGSC0003DMG400030033 Solanum tuberosum HOM05D005469 ORTHO05D001701 1.5e-07 60.5 162 29.0
Sopen02g022900 Solanum pennellii HOM05D003009 ORTHO05D001701 2.0e-07 60.1 126 31.7
TAR633G0722 Trochodendron aralioides HOM05D005469 ORTHO05D001701 2.0e-07 60.1 136 33.1
AUR62022927 Chenopodium quinoa HOM05D005469 ORTHO05D001701 2.6e-07 59.7 135 28.9
Duzib114G0491 Durio zibethinus HOM05D005469 ORTHO05D001701 2.6e-07 59.7 167 30.5
Gorai.007G126500 Gossypium raimondii HOM05D002284 ORTHO05D002427 3.4e-07 59.3 135 31.9
PGR142G1835 Punica granatum HOM05D005469 ORTHO05D001701 3.4e-07 59.3 157 30.6
Sed0020461 Sechium edule HOM05D005469 ORTHO05D001701 3.4e-07 59.3 133 29.3
TAR623G0989 Trochodendron aralioides HOM05D005469 ORTHO05D001701 3.4e-07 59.3 132 29.5
PSO017G6429 Papaver somniferum HOM05D005469 ORTHO05D001701 4.4e-07 58.9 149 30.2
AUR62012286 Chenopodium quinoa HOM05D005469 ORTHO05D001701 5.8e-07 58.5 135 28.9
Glyma.10G016600 Glycine max HOM05D002284 ORTHO05D002427 5.8e-07 58.5 131 34.4
TPR.G33986 Trifolium pratense HOM05D002284 ORTHO05D002427 5.8e-07 58.5 129 31.0
DCAR_011836 Daucus carota HOM05D005469 ORTHO05D001701 7.5e-07 58.2 173 30.1
VMungo0720G1206 Vigna mungo HOM05D002284 ORTHO05D002427 9.8e-07 57.8 128 34.4
Cc02_g06130 Coffea canephora HOM05D005469 ORTHO05D001701 1.3e-06 57.4 168 28.6
PSO349G0001 Papaver somniferum HOM05D005469 ORTHO05D001701 1.3e-06 57.4 149 29.5
Thecc.01G305300 Theobroma cacao HOM05D002284 ORTHO05D002427 1.3e-06 57.4 141 31.2
EL10Ac2g04878 Beta vulgaris HOM05D005469 ORTHO05D001701 1.7e-06 57.0 138 29.0
CAN.G529.5 Capsicum annuum HOM05D003009 ORTHO05D001701 1.7e-06 57.0 125 31.2
FvH4_2g26050 Fragaria vesca HOM05D002284 ORTHO05D002427 1.7e-06 57.0 106 35.8
FAN24G1926 Fragaria x ananassa HOM05D002284 ORTHO05D002427 1.7e-06 57.0 106 35.8
MBI15_g40303_MAGBIO Magnolia biondii HOM05D005469 ORTHO05D001701 1.7e-06 57.0 104 33.7
PGSC0003DMG400029698 Solanum tuberosum HOM05D003009 ORTHO05D001701 1.7e-06 57.0 99 32.3
Duzib128G1408 Durio zibethinus HOM05D005469 ORTHO05D001701 2.2e-06 56.6 143 30.8
FAN15G3395 Fragaria x ananassa HOM05D002828 ORTHO05D003457 2.2e-06 56.6 106 35.8
PSO801G0522 Papaver somniferum HOM05D005469 ORTHO05D001701 2.2e-06 56.6 110 33.6
Medtr1g088110 Medicago truncatula HOM05D002284 ORTHO05D002427 2.9e-06 56.2 129 31.0
A07p26050 Brassica napus HOM05D002284 ORTHO05D002427 3.7e-06 55.8 130 33.8
FAN27G1649 Fragaria x ananassa HOM05D002828 ORTHO05D003457 3.7e-06 55.8 106 37.7
THA.LOC104816535 Tarenaya hassleriana HOM05D005469 ORTHO05D001701 3.7e-06 55.8 139 30.2
MD07G1225500 Malus domestica HOM05D005469 ORTHO05D001701 4.9e-06 55.5 140 29.3
Os01g0164075 Oryza sativa ssp. japonica HOM05D005469 ORTHO05D001701 4.9e-06 55.5 143 28.7
Thecc.01G305500 Theobroma cacao HOM05D002284 ORTHO05D002427 4.9e-06 55.5 125 32.8
GSVIVG01007286001 Vitis vinifera HOM05D003009 ORTHO05D001701 4.9e-06 55.5 129 31.0
AagrBONN_evm.TU.Sc2ySwM_117.3504 Anthoceros agrestis HOM05D005469 ORTHO05D001701 6.4e-06 55.1 174 29.3
THA.LOC104817480 Tarenaya hassleriana HOM05D002284 ORTHO05D002427 6.4e-06 55.1 138 30.4
Thecc.01G305100 Theobroma cacao HOM05D002284 ORTHO05D002427 6.4e-06 55.1 127 32.3


User provided reference genes

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