Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.09G004900 Carya illinoinensis HOM05D005722 ORTHO05D007934 7.9e-291 1003.0 507 100.0
Cfa016476 Carpinus fangiana HOM05D005722 ORTHO05D007934 4.4e-265 917.5 505 90.7
QL07p041452 Quercus lobata HOM05D005722 ORTHO05D007934 8.6e-261 903.3 506 88.9
Potri.006G119500 Populus trichocarpa HOM05D005722 ORTHO05D007934 1.8e-250 869.0 505 86.1
Sabra06G0094100 Salix brachista HOM05D005722 ORTHO05D007934 8.3e-248 860.1 504 85.7
Prupe.7G123300 Prunus persica HOM05D005722 ORTHO05D007934 1.9e-247 859.0 507 84.4
CSS0018899 Camellia sinensis var. sinensis HOM05D005722 ORTHO05D007934 4.1e-247 857.8 505 84.2
Hma1.2p1_0547F.1_g176330 Hydrangea macrophylla HOM05D005722 ORTHO05D007934 7.0e-247 857.1 502 84.1
Duzib128G0866 Durio zibethinus HOM05D005722 ORTHO05D007934 3.5e-246 854.7 495 86.9
Atru.chr8.1708 Acer truncatum HOM05D005722 ORTHO05D007934 7.8e-246 853.6 501 83.8
FAN05G1451 Fragaria x ananassa HOM05D005722 ORTHO05D007934 1.7e-245 852.4 506 83.4
FvH4_6g17170 Fragaria vesca HOM05D005722 ORTHO05D007934 3.9e-245 851.3 506 83.4
CSS0022139 Camellia sinensis var. sinensis HOM05D005722 ORTHO05D007934 5.0e-245 850.9 505 83.8
FAN05G4610 Fragaria x ananassa HOM05D005722 ORTHO05D007934 1.9e-244 849.0 506 83.0
Manes.09G048478 Manihot esculenta HOM05D005722 ORTHO05D007934 3.3e-244 848.2 496 84.9
Thecc.05G075200 Theobroma cacao HOM05D005722 ORTHO05D007934 6.2e-243 844.0 505 83.4
COL.COLO4_22250 Corchorus olitorius HOM05D005722 ORTHO05D007934 8.0e-243 843.6 498 84.5
Gohir.A09G143300 Gossypium hirsutum HOM05D005722 ORTHO05D007934 1.2e-241 839.7 507 83.6
RcHm_v2.0_Chr3g0471261 Rosa chinensis HOM05D005722 ORTHO05D007934 1.2e-241 839.7 506 81.8
Cpa.g.sc5.129 Carica papaya HOM05D005722 ORTHO05D007934 2.0e-241 839.0 505 82.4
Gorai.006G160000 Gossypium raimondii HOM05D005722 ORTHO05D007934 1.3e-240 836.3 507 83.4
MD12G1103200 Malus domestica HOM05D005722 ORTHO05D007934 6.4e-240 833.9 509 81.7
TWI74G0410 Tripterygium wilfordii HOM05D005722 ORTHO05D007934 8.3e-240 833.6 508 81.9
TAR623G1222 Trochodendron aralioides HOM05D005722 ORTHO05D007934 1.6e-238 829.3 501 82.6
Cc06_g04740 Coffea canephora HOM05D005722 ORTHO05D007934 1.1e-236 823.2 498 82.7
Ciclev10011424m.g Citrus clementina HOM05D005722 ORTHO05D007934 2.1e-235 818.9 495 82.8
Haze_19473 Corylus avellana HOM05D005722 ORTHO05D007934 1.1e-234 816.6 450 90.9
Peaxi162Scf00138g00041 Petunia axillaris HOM05D005722 ORTHO05D007934 1.1e-234 816.6 507 81.7
vmacro23004 Vaccinium macrocarpon HOM05D005722 ORTHO05D007934 1.3e-232 809.7 504 81.5
Rhsim03G0086400 Rhododendron simsii HOM05D005722 ORTHO05D007934 1.7e-232 809.3 494 82.2
CANSAT56G0690 Cannabis sativa HOM05D005722 ORTHO05D007934 1.4e-231 806.2 503 80.3
EL10Ac7g16706 Beta vulgaris HOM05D005722 ORTHO05D007934 1.6e-230 802.7 501 81.4
AUR62042706 Chenopodium quinoa HOM05D005722 ORTHO05D007934 1.6e-230 802.7 506 79.8
MSTRG.19206 Avicennia marina HOM05D005722 ORTHO05D007934 2.7e-230 802.0 505 79.6
Nitab4.5_0004731g0050 Nicotiana tabacum HOM05D005722 ORTHO05D007934 3.5e-230 801.6 496 80.8
AUR62026979 Chenopodium quinoa HOM05D005722 ORTHO05D007934 7.8e-230 800.4 506 79.8
Aqoxy1G01041 Aquilegia oxysepala HOM05D005722 ORTHO05D007934 1.3e-229 799.7 504 79.4
Ah.08g211270 Amaranthus hybridus HOM05D005722 ORTHO05D007934 1.7e-229 799.3 506 79.6
DCAR_015016 Daucus carota HOM05D005722 ORTHO05D007934 1.7e-229 799.3 494 80.8
Lj1g0006800 Lotus japonicus HOM05D005722 ORTHO05D007934 1.1e-228 796.6 488 81.8
Nn2g13890 Nelumbo nucifera HOM05D005722 ORTHO05D007934 1.5e-228 796.2 506 79.2
Phvul.007G226300 Phaseolus vulgaris HOM05D005722 ORTHO05D007934 4.3e-228 794.7 493 80.3
PGSC0003DMG400003879 Solanum tuberosum HOM05D005722 ORTHO05D007934 7.3e-228 793.9 501 79.6
CAN.G1038.3 Capsicum annuum HOM05D005722 ORTHO05D007934 1.2e-227 793.1 498 79.9
Migut.J00472 Erythranthe guttata HOM05D005722 ORTHO05D007934 6.2e-227 790.8 490 80.0
PGR004G2571 Punica granatum HOM05D005722 ORTHO05D007934 6.2e-227 790.8 496 80.0
PSO063G5110 Papaver somniferum HOM05D005722 ORTHO05D007934 1.8e-226 789.3 502 78.5
Glyma.13G147700 Glycine max HOM05D005722 ORTHO05D007934 2.4e-226 788.9 505 78.4
PSO339G6299 Papaver somniferum HOM05D005722 ORTHO05D007934 1.5e-225 786.2 502 78.5
VMungo0720G2103 Vigna mungo HOM05D005722 ORTHO05D007934 2.0e-225 785.8 493 78.1
Sopen09g003380 Solanum pennellii HOM05D005722 ORTHO05D007934 7.6e-225 783.9 493 78.9
Glyma.10G063100 Glycine max HOM05D005722 ORTHO05D007934 1.7e-224 782.7 506 77.5
arahy.Tifrunner.gnm1.ann1.D7QF3J Arachis hypogaea HOM05D005722 ORTHO05D007934 2.4e-223 778.9 498 78.3
arahy.Tifrunner.gnm1.ann1.P0W3IN Arachis hypogaea HOM05D005722 ORTHO05D007934 2.4e-223 778.9 498 78.3
Lalb_Chr02g0155431 Lupinus albus HOM05D005722 ORTHO05D007934 2.4e-223 778.9 491 79.2
TPR.G31667 Trifolium pratense HOM05D005722 ORTHO05D007934 3.2e-223 778.5 501 78.6
Lalb_Chr25g0288811 Lupinus albus HOM05D005722 ORTHO05D007934 1.2e-222 776.5 485 80.6
THA.LOC104816667 Tarenaya hassleriana HOM05D005722 ORTHO05D007934 1.2e-222 776.5 471 81.3
Lj5g0013810 Lotus japonicus HOM05D005722 ORTHO05D007934 6.0e-222 774.2 492 77.2
Medtr1g062130 Medicago truncatula HOM05D005722 ORTHO05D007934 1.0e-221 773.5 507 76.3
Sc20g0005780 Simmondsia chinensis HOM05D005722 ORTHO05D007934 5.1e-221 771.2 509 76.2
Ca_04564_v3 Cicer arietinum L. HOM05D005722 ORTHO05D007934 5.6e-220 767.7 507 76.3
SalBow3G1081 Salvia bowleyana HOM05D005722 ORTHO05D007934 5.6e-220 767.7 503 76.7
Medtr7g102810 Medicago truncatula HOM05D005722 ORTHO05D007934 2.8e-219 765.4 477 80.1
SalBow3G1392 Salvia bowleyana HOM05D005722 ORTHO05D007934 4.7e-219 764.6 503 76.5
SGA_v2.0_scaffold75G24819 Striga asiatica HOM05D005722 ORTHO05D007934 2.4e-218 762.3 486 78.6
MBI18_g39612_MAGBIO Magnolia biondii HOM05D005722 ORTHO05D007934 3.1e-218 761.9 488 77.5
Gohir.D09G139500 Gossypium hirsutum HOM05D005722 ORTHO05D007934 9.0e-218 760.4 453 84.8
Carub.0006s0238 Capsella rubella HOM05D005722 ORTHO05D007934 1.2e-217 760.0 491 76.8
CARHR209770 Cardamine hirsuta HOM05D005722 ORTHO05D007934 5.8e-217 757.7 491 76.6
Psat3g038760 Pisum sativum HOM05D005722 ORTHO05D007934 5.8e-217 757.7 489 77.7
ECA238G3369 Erigeron canadensis HOM05D005722 ORTHO05D007934 2.2e-216 755.7 486 77.4
Lsat_1_v5_gn_2_20401 Lactuca sativa HOM05D005722 ORTHO05D007934 2.2e-216 755.7 493 76.3
Gohir.D09G139600 Gossypium hirsutum HOM05D005722 ORTHO05D007934 2.9e-216 755.4 485 77.3
Gorai.006G160100 Gossypium raimondii HOM05D005722 ORTHO05D007934 2.9e-216 755.4 485 77.3
TPR.G22453 Trifolium pratense HOM05D005722 ORTHO05D007934 2.9e-216 755.4 508 74.6
Solyc09g008550.4 Solanum lycopersicum HOM05D005722 ORTHO05D007934 3.8e-216 755.0 464 80.0
C03p01590 Brassica napus HOM05D005722 ORTHO05D007934 1.1e-215 753.4 484 77.3
Aa31LG1G21640 Aethionema arabicum HOM05D005722 ORTHO05D007934 1.4e-215 753.1 492 76.4
AT5G03555 Arabidopsis thaliana HOM05D005722 ORTHO05D007934 1.9e-215 752.7 484 76.7
A03p01230 Brassica napus HOM05D005722 ORTHO05D007934 4.2e-215 751.5 484 77.3
BolC3t12711H Brassica oleracea HOM05D005722 ORTHO05D007934 4.2e-215 751.5 484 77.1
BraA03t09503Z Brassica rapa HOM05D005722 ORTHO05D007934 4.2e-215 751.5 484 77.1
Sp6g39190 Schrenkiella parvula HOM05D005722 ORTHO05D007934 4.2e-215 751.5 484 77.5
Thhalv10015725m.g Eutrema salsugineum HOM05D005722 ORTHO05D007934 5.4e-215 751.1 484 76.9
Psat6g077240 Pisum sativum HOM05D005722 ORTHO05D007934 1.6e-214 749.6 498 74.5
AL6G13040 Arabidopsis lyrata HOM05D005722 ORTHO05D007934 2.1e-214 749.2 484 76.4
FAN14G5091 Fragaria x ananassa HOM05D005722 ORTHO05D007934 2.1e-214 749.2 442 84.2
Gohir.A09G143500 Gossypium hirsutum HOM05D005722 ORTHO05D007934 1.7e-213 746.1 485 76.9
ClCG10G019670 Citrullus lanatus HOM05D005722 ORTHO05D007934 1.3e-211 740.0 479 74.9
HanXRQChr14g0432851 Helianthus annuus HOM05D005722 ORTHO05D007934 3.6e-211 738.4 485 75.9
FAN02G1363 Fragaria x ananassa HOM05D005722 ORTHO05D007934 8.1e-211 737.3 506 75.5
unitig_578.g15784 Utricularia gibba HOM05D005722 ORTHO05D007934 2.4e-210 735.7 493 73.4
MELO3C009405.2 Cucumis melo HOM05D005722 ORTHO05D007934 3.1e-210 735.3 478 75.1
Cfa016468 Carpinus fangiana HOM05D005722 ORTHO05D007934 3.5e-206 721.8 447 83.0
CsaV3_3G036500 Cucumis sativus L. HOM05D005722 ORTHO05D007934 3.0e-205 718.8 478 73.8
Nitab4.5_0003906g0050 Nicotiana tabacum HOM05D005722 ORTHO05D007934 6.7e-205 717.6 496 74.6
Sed0005717 Sechium edule HOM05D005722 ORTHO05D007934 1.4e-202 709.9 486 72.6
ATR0009G019 Amborella trichopoda HOM05D005722 ORTHO05D007934 6.0e-198 694.5 495 69.7
Dinv35829 Davidia involucrata HOM05D005722 ORTHO05D007934 1.3e-197 693.3 479 75.4
Eucgr.A01597 Eucalyptus grandis HOM05D005722 ORTHO05D007934 1.5e-196 689.9 510 70.0
GSVIVG01033705001 Vitis vinifera HOM05D005722 ORTHO05D007934 4.8e-195 684.9 508 71.3
Ca_30109_v3 Cicer arietinum L. HOM05D005722 ORTHO05D007934 5.3e-194 681.4 409 81.9
MBI18_g19054_MAGBIO Magnolia biondii HOM05D005722 ORTHO05D007934 6.5e-192 674.5 484 68.6
SEGI_35570 Sequoiadendron giganteum HOM05D005722 ORTHO05D007934 8.4e-192 674.1 479 67.6
MBI18_g31623_MAGBIO Magnolia biondii HOM05D005722 ORTHO05D007934 9.3e-191 670.6 485 68.9
MBI18_g39457_MAGBIO Magnolia biondii HOM05D005722 ORTHO05D007934 2.1e-190 669.5 485 68.7
Cc06_g04750 Coffea canephora HOM05D005722 ORTHO05D007934 3.7e-179 632.1 487 66.1
Os02g0666700 Oryza sativa ssp. japonica HOM05D005722 ORTHO05D007934 6.3e-179 631.3 481 64.7
Zm00001eb249990 Zea mays HOM05D005722 ORTHO05D007934 3.1e-178 629.0 493 62.5
HPP92_025568 Vanilla planifolia HOM05D005722 ORTHO05D007934 6.9e-178 627.9 463 67.2
CDE08G1312 Ceratophyllum demersum HOM05D005722 ORTHO05D007934 1.0e-168 597.4 414 73.2
Mapoly0002s0120 Marchantia polymorpha HOM05D005722 ORTHO05D007934 3.9e-165 585.5 475 57.7
Pp3c14_20990 Physcomitrium patens HOM05D005722 ORTHO05D007934 3.7e-163 578.9 476 59.9
Pp3c1_30640 Physcomitrium patens HOM05D005722 ORTHO05D007934 1.2e-161 573.9 478 59.2
SMO115G0026 Selaginella moellendorffii HOM05D005722 ORTHO05D007934 3.0e-157 559.3 481 59.0
Actinidia26637 Actinidia chinensis HOM05D005722 ORTHO05D007934 1.7e-155 553.5 449 67.3
Actinidia28931 Actinidia chinensis HOM05D005722 ORTHO05D007934 7.5e-148 528.1 372 75.0
Lj2P123T37 Lonicera japonica HOM05D005722 ORTHO05D007934 5.9e-145 518.5 320 82.2
Cre09.g389356 Chlamydomonas reinhardtii HOM05D005722 ORTHO05D007934 3.8e-144 515.8 476 53.4
Sc20g0005800 Simmondsia chinensis HOM05D005722 ORTHO05D007934 6.3e-139 498.4 333 76.9
MCO11G702 Micromonas commoda HOM05D005722 ORTHO05D007934 4.3e-127 459.1 509 48.3
PRCOL_00006021 Prasinoderma coloniale HOM05D005722 ORTHO05D007934 6.6e-120 435.3 498 47.2
Haze_19472 Corylus avellana HOM05D005722 ORTHO05D007934 8.7e-80 302.0 220 70.5
Haze_02843 Corylus avellana HOM05D005722 ORTHO05D029153 2.0e-63 247.7 143 83.9
Cfa025019 Carpinus fangiana HOM05D005722 ORTHO05D123305 7.2e-58 229.2 479 31.3
Pp3s34_270 Physcomitrium patens HOM05D005722 ORTHO05D317165 8.3e-38 162.5 430 28.8
Sc20g0005790 Simmondsia chinensis HOM05D005722 ORTHO05D029153 1.1e-37 162.2 114 67.5
TPR.G39511 Trifolium pratense HOM05D005722 ORTHO05D029153 3.7e-30 137.1 72 88.9
Lsat_1_v5_gn_4_152401 Lactuca sativa HOM05D005722 ORTHO05D007934 1.0e-24 119.0 80 81.2
FAN14G5603 Fragaria x ananassa HOM05D005722 ORTHO05D029153 5.0e-19 100.1 63 74.6
MCO11G808 Micromonas commoda HOM05D005722 ORTHO05D268580 1.4e-16 92.0 418 25.1
MCO10G252 Micromonas commoda HOM05D005722 ORTHO05D270642 1.9e-13 81.6 440 25.9
Cfa016469 Carpinus fangiana HOM05D005722 ORTHO05D125356 1.7e-06 58.5 28 92.9


User provided reference genes

Program Settings