Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.08G182000 Carya illinoinensis HOM05D004420 ORTHO05D005048 2.5e-185 652.1 373 100.0
Cfa007085 Carpinus fangiana HOM05D004420 ORTHO05D005048 1.1e-145 520.4 394 77.7
QL06p053029 Quercus lobata HOM05D004420 ORTHO05D005048 7.5e-129 464.5 394 71.6
Prupe.7G183600 Prunus persica HOM05D004420 ORTHO05D005048 2.2e-120 436.4 381 65.1
CiPaw.07G002200 Carya illinoinensis HOM05D004420 ORTHO05D005048 8.3e-120 434.5 329 78.1
FAN19G0089 Fragaria x ananassa HOM05D004420 ORTHO05D005048 6.0e-110 401.7 379 62.3
RcHm_v2.0_Chr2g0097081 Rosa chinensis HOM05D004420 ORTHO05D005048 6.0e-110 401.7 381 63.3
FvH4_1g10260 Fragaria vesca HOM05D004420 ORTHO05D005048 1.7e-109 400.2 379 62.0
FAN26G2737 Fragaria x ananassa HOM05D004420 ORTHO05D005048 1.7e-109 400.2 379 62.0
Thecc.01G004900 Theobroma cacao HOM05D004420 ORTHO05D005048 3.9e-109 399.1 385 62.1
MD02G1114600 Malus domestica HOM05D004420 ORTHO05D005048 3.1e-106 389.4 387 60.5
Cpa.g.sc6.366 Carica papaya HOM05D004420 ORTHO05D005048 1.2e-105 387.5 373 60.6
FAN23G0043 Fragaria x ananassa HOM05D004420 ORTHO05D005048 1.5e-105 387.1 379 60.4
Glyma.01G158300 Glycine max HOM05D004420 ORTHO05D005048 4.9e-104 382.1 381 64.0
arahy.Tifrunner.gnm1.ann1.7Y7MXI Arachis hypogaea HOM05D004420 ORTHO05D005048 1.2e-102 377.5 378 60.3
arahy.Tifrunner.gnm1.ann1.PTZ9GF Arachis hypogaea HOM05D004420 ORTHO05D005048 1.2e-102 377.5 378 60.3
Potri.007G063000 Populus trichocarpa HOM05D004420 ORTHO05D005048 3.5e-102 375.9 391 57.8
MD15G1230400 Malus domestica HOM05D004420 ORTHO05D005048 2.3e-101 373.2 385 58.2
Dinv40192 Davidia involucrata HOM05D004420 ORTHO05D005048 3.9e-101 372.5 376 58.2
Manes.01G155700 Manihot esculenta HOM05D004420 ORTHO05D005048 8.6e-101 371.3 400 55.5
Duzib147G0341 Durio zibethinus HOM05D004420 ORTHO05D005048 1.1e-100 370.9 381 56.7
Manes.02G114400 Manihot esculenta HOM05D004420 ORTHO05D005048 1.9e-100 370.2 397 56.2
Potri.005G102000 Populus trichocarpa HOM05D004420 ORTHO05D005048 1.6e-99 367.1 386 55.7
TWI09G0210 Tripterygium wilfordii HOM05D004420 ORTHO05D005048 6.2e-99 365.2 379 54.9
Phvul.003G270300 Phaseolus vulgaris HOM05D004420 ORTHO05D005048 8.1e-99 364.8 372 58.9
Glyma.11G086400 Glycine max HOM05D004420 ORTHO05D005048 8.9e-98 361.3 379 62.5
VMungo0251G1478 Vigna mungo HOM05D004420 ORTHO05D005048 2.6e-97 359.8 372 59.9
MELO3C013712.2 Cucumis melo HOM05D004420 ORTHO05D005048 2.2e-96 356.7 379 60.2
Ciclev10025852m.g Citrus clementina HOM05D004420 ORTHO05D005048 4.9e-96 355.5 387 55.3
CsaV3_3G000180 Cucumis sativus L. HOM05D004420 ORTHO05D005048 1.4e-95 354.0 379 60.2
Lalb_Chr05g0214821 Lupinus albus HOM05D004420 ORTHO05D005048 5.4e-95 352.1 378 61.4
Phvul.002G117000 Phaseolus vulgaris HOM05D004420 ORTHO05D005048 5.4e-95 352.1 379 58.6
Sabra05G0084400 Salix brachista HOM05D004420 ORTHO05D005048 5.4e-95 352.1 389 54.2
ClCG10G000160 Citrullus lanatus HOM05D004420 ORTHO05D005048 9.2e-95 351.3 392 58.4
Ca_02853_v3 Cicer arietinum L. HOM05D004420 ORTHO05D005048 2.1e-94 350.1 376 57.7
VMungo1215G0928 Vigna mungo HOM05D004420 ORTHO05D005048 3.5e-94 349.4 380 58.7
CSS0016949 Camellia sinensis var. sinensis HOM05D004420 ORTHO05D005048 1.7e-93 347.1 377 54.6
CSS0044881 Camellia sinensis var. sinensis HOM05D004420 ORTHO05D005048 1.7e-93 347.1 377 54.6
Duzib264G0151 Durio zibethinus HOM05D004420 ORTHO05D005048 8.6e-93 344.7 385 57.4
CANSAT25G3726 Cannabis sativa HOM05D004420 ORTHO05D005048 3.3e-92 342.8 391 59.6
CSS0013805 Camellia sinensis var. sinensis HOM05D004420 ORTHO05D005048 4.3e-92 342.4 377 56.0
Atru.chr3.127 Acer truncatum HOM05D004420 ORTHO05D005048 2.1e-91 340.1 381 60.6
COL.COLO4_22555 Corchorus olitorius HOM05D004420 ORTHO05D005048 1.8e-90 337.0 353 57.2
Gohir.D03G001500 Gossypium hirsutum HOM05D004420 ORTHO05D005048 5.2e-90 335.5 390 56.4
Medtr8g073305 Medicago truncatula HOM05D004420 ORTHO05D005048 6.8e-90 335.1 379 57.3
Gohir.A02G178300 Gossypium hirsutum HOM05D004420 ORTHO05D005048 2.6e-89 333.2 394 55.8
Eucgr.I02220 Eucalyptus grandis HOM05D004420 ORTHO05D005048 5.8e-89 332.0 373 55.8
Gorai.003G001900 Gossypium raimondii HOM05D004420 ORTHO05D005048 5.8e-89 332.0 392 55.9
Dinv40193 Davidia involucrata HOM05D004420 ORTHO05D005048 7.6e-89 331.6 376 55.1
Glyma.09G197900 Glycine max HOM05D004420 ORTHO05D005048 1.9e-87 327.0 353 62.0
Hma1.2p1_0300F.1_g117950 Hydrangea macrophylla HOM05D004420 ORTHO05D005048 3.2e-87 326.2 378 54.2
Psat4g103680 Pisum sativum HOM05D004420 ORTHO05D005048 4.1e-87 325.9 382 55.2
TPR.G13730 Trifolium pratense HOM05D004420 ORTHO05D005048 4.1e-87 325.9 380 57.1
TWI53G1718 Tripterygium wilfordii HOM05D004420 ORTHO05D005048 1.2e-86 324.3 358 54.5
Actinidia35683 Actinidia chinensis HOM05D004420 ORTHO05D005048 1.0e-85 321.2 376 54.8
Actinidia28747 Actinidia chinensis HOM05D004420 ORTHO05D005048 6.6e-85 318.5 372 56.5
Lj2g0010108 Lotus japonicus HOM05D004420 ORTHO05D005048 1.1e-84 317.8 379 55.1
Sed0027819 Sechium edule HOM05D004420 ORTHO05D005048 3.1e-82 309.7 380 55.5
Lalb_Chr09g0334351 Lupinus albus HOM05D004420 ORTHO05D005048 2.6e-81 306.6 377 54.6
Lalb_Chr09g0324761 Lupinus albus HOM05D004420 ORTHO05D005048 4.4e-81 305.8 375 52.8
Actinidia17355 Actinidia chinensis HOM05D004420 ORTHO05D005048 7.6e-81 305.1 376 48.9
Cc07_g11920 Coffea canephora HOM05D004420 ORTHO05D005048 2.9e-80 303.1 390 53.1
Glyma.16G111400 Glycine max HOM05D004420 ORTHO05D005048 4.9e-80 302.4 350 58.3
Oeu045734.2 Olea europaea HOM05D004420 ORTHO05D005048 3.0e-77 293.1 389 49.6
Rhsim10G0195100 Rhododendron simsii HOM05D004420 ORTHO05D005048 1.9e-76 290.4 376 48.4
PGR119G1834 Punica granatum HOM05D004420 ORTHO05D005048 1.4e-74 284.3 378 52.4
Oeu043391.2 Olea europaea HOM05D004420 ORTHO05D005048 1.2e-73 281.2 390 48.5
Actinidia22893 Actinidia chinensis HOM05D004420 ORTHO05D005048 2.6e-73 280.0 376 48.7
GSVIVG01022291001 Vitis vinifera HOM05D004420 ORTHO05D005048 2.6e-73 280.0 374 53.7
Ah.02g123000 Amaranthus hybridus HOM05D000464 ORTHO05D005048 7.6e-73 278.5 385 49.4
Nitab4.5_0004608g0040 Nicotiana tabacum HOM05D004420 ORTHO05D005048 7.6e-73 278.5 391 47.3
CAN.G1238.15 Capsicum annuum HOM05D004420 ORTHO05D005048 9.9e-73 278.1 385 48.8
EL10Ac6g15050 Beta vulgaris HOM05D004420 ORTHO05D005048 1.3e-72 277.7 385 51.7
PGSC0003DMG400001515 Solanum tuberosum HOM05D004420 ORTHO05D005048 1.7e-72 277.3 391 49.1
Hma1.2p1_0085F.1_g044630 Hydrangea macrophylla HOM05D004420 ORTHO05D005048 2.2e-72 276.9 379 47.5
Gorai.001G199300 Gossypium raimondii HOM05D004420 ORTHO05D005048 3.8e-72 276.2 342 54.1
Lalb_Chr16g0380091 Lupinus albus HOM05D004420 ORTHO05D005048 3.8e-72 276.2 380 51.3
Sopen02g027250 Solanum pennellii HOM05D004420 ORTHO05D005048 8.4e-72 275.0 391 48.6
Gohir.D07G178200 Gossypium hirsutum HOM05D004420 ORTHO05D005048 1.4e-71 274.2 342 53.8
Gohir.A07G173800 Gossypium hirsutum HOM05D004420 ORTHO05D005048 9.3e-71 271.6 342 53.8
Nitab4.5_0001467g0050 Nicotiana tabacum HOM05D004420 ORTHO05D005048 2.7e-70 270.0 389 47.8
vmacro20627 Vaccinium macrocarpon HOM05D004420 ORTHO05D005048 7.9e-70 268.5 369 46.3
Ah.03g142860 Amaranthus hybridus HOM05D004420 ORTHO05D005048 1.9e-68 263.8 389 48.3
Peaxi162Scf00121g00249 Petunia axillaris HOM05D004420 ORTHO05D005048 2.5e-68 263.5 392 49.2
Lj2P500T27 Lonicera japonica HOM05D004420 ORTHO05D005048 5.6e-68 262.3 376 47.1
Lj4g0016332 Lotus japonicus HOM05D004420 ORTHO05D005048 9.6e-68 261.5 374 46.3
DCAR_014284 Daucus carota HOM05D004420 ORTHO05D005048 3.1e-66 256.5 372 44.9
DCAR_014308 Daucus carota HOM05D004420 ORTHO05D005048 3.1e-66 256.5 372 44.9
CiPaw.13G121300 Carya illinoinensis HOM05D004420 ORTHO05D005048 5.3e-66 255.8 176 96.6
AUR62002052 Chenopodium quinoa HOM05D004420 ORTHO05D005048 2.2e-64 250.4 376 43.6
Lj4P237T30 Lonicera japonica HOM05D004420 ORTHO05D005048 2.2e-64 250.4 386 51.8
Sc07g0001390 Simmondsia chinensis HOM05D004420 ORTHO05D005048 2.9e-64 250.0 376 48.7
AUR62003743 Chenopodium quinoa HOM05D004420 ORTHO05D005048 7.1e-63 245.4 265 52.8
TAR376G0940 Trochodendron aralioides HOM05D004420 ORTHO05D005048 3.5e-62 243.0 379 48.3
Sabra07G0052400 Salix brachista HOM05D004420 ORTHO05D005048 7.9e-62 241.9 335 50.4
Migut.F01091 Erythranthe guttata HOM05D004420 ORTHO05D005048 4.3e-60 236.1 374 48.1
TAR625G1485 Trochodendron aralioides HOM05D004420 ORTHO05D005048 1.5e-57 227.6 369 45.5
SalBow2G0301 Salvia bowleyana HOM05D004420 ORTHO05D005048 4.9e-56 222.6 380 48.4
SalBow2G0742 Salvia bowleyana HOM05D004420 ORTHO05D005048 4.9e-56 222.6 380 48.4
THA.LOC104807425 Tarenaya hassleriana HOM05D004420 ORTHO05D005048 1.3e-53 214.5 376 42.6
TAR381G0338 Trochodendron aralioides HOM05D004420 ORTHO05D005048 1.9e-52 210.7 333 47.7
THA.LOC104819714 Tarenaya hassleriana HOM05D004420 ORTHO05D005048 3.3e-52 209.9 388 38.7
Aa31LG8G14840 Aethionema arabicum HOM05D004420 ORTHO05D005048 5.3e-50 202.6 385 40.0
Nn6g31686 Nelumbo nucifera HOM05D004420 ORTHO05D005048 4.5e-49 199.5 315 49.8
Solyc03g032100.2 Solanum lycopersicum HOM05D004420 ORTHO05D005048 1.1e-47 194.9 312 43.3
SGA_v2.0_scaffold10G05298 Striga asiatica HOM05D004420 ORTHO05D005048 7.9e-46 188.7 374 44.4
AL3G50510 Arabidopsis lyrata HOM05D004420 ORTHO05D005048 1.8e-45 187.6 377 39.0
Sopen03g005950 Solanum pennellii HOM05D004420 ORTHO05D005048 1.8e-45 187.6 312 42.3
PGSC0003DMG400018682 Solanum tuberosum HOM05D004420 ORTHO05D005048 5.1e-45 186.0 312 45.2
Aqoxy6G01610 Aquilegia oxysepala HOM05D004420 ORTHO05D005048 8.8e-45 185.3 373 39.4
ECA246G3765 Erigeron canadensis HOM05D004420 ORTHO05D005048 1.4e-42 177.9 381 41.5
Carub.0003s3163 Capsella rubella HOM05D004420 ORTHO05D005048 3.1e-42 176.8 380 37.9
Carub.0007s0482 Capsella rubella HOM05D004420 ORTHO05D005048 4.1e-42 176.4 379 37.5
PSO210G4741 Papaver somniferum HOM05D004420 ORTHO05D005048 1.1e-39 168.3 359 41.5
unitig_46.g18801 Utricularia gibba HOM05D004420 ORTHO05D005048 1.1e-39 168.3 375 35.5
HanXRQChr16g0531911 Helianthus annuus HOM05D004420 ORTHO05D005048 1.4e-39 167.9 375 40.3
HanXRQChr16g0531901 Helianthus annuus HOM05D004420 ORTHO05D005048 5.5e-39 166.0 375 41.1
Migut.F00308 Erythranthe guttata HOM05D004420 ORTHO05D005048 2.1e-38 164.1 379 40.1
PSO761G0558 Papaver somniferum HOM05D004420 ORTHO05D005048 3.6e-38 163.3 342 42.7
CARHR243840 Cardamine hirsuta HOM05D004420 ORTHO05D005048 4.7e-38 162.9 378 38.4
AT4G35510 Arabidopsis thaliana HOM05D004420 ORTHO05D005048 5.1e-37 159.5 381 34.4
MBI08_g12255_MAGBIO Magnolia biondii HOM05D004420 ORTHO05D005048 6.7e-37 159.1 381 37.5
AL7G15660 Arabidopsis lyrata HOM05D004420 ORTHO05D005048 4.8e-35 152.9 380 35.0
Peaxi162Scf00580g00013 Petunia axillaris HOM05D004420 ORTHO05D005048 8.2e-35 152.1 216 53.2
SGA_v2.0_scaffold60G21098 Striga asiatica HOM05D004420 ORTHO05D005048 1.2e-33 148.3 314 36.6
CAN.G354.13 Capsicum annuum HOM05D004420 ORTHO05D005048 2.0e-33 147.5 319 41.4
Eucgr.J02539 Eucalyptus grandis HOM05D004420 ORTHO05D005048 3.8e-32 143.3 180 52.8
Thhalv10025668m.g Eutrema salsugineum HOM05D004420 ORTHO05D005048 7.2e-31 139.0 388 34.3
Sp3g30900 Schrenkiella parvula HOM05D004420 ORTHO05D005048 8.0e-30 135.6 339 37.8
C07p05740 Brassica napus HOM05D004420 ORTHO05D005048 1.1e-28 131.7 338 39.3
unitig_52.g17736 Utricularia gibba HOM05D004420 ORTHO05D005048 1.5e-28 131.3 287 47.0
BcaC06g36286 Brassica carinata HOM05D004420 ORTHO05D005048 2.6e-28 130.6 338 39.3
BcaB03g16523 Brassica carinata HOM05D004420 ORTHO05D005048 2.8e-27 127.1 327 35.8
Thhalv10022789m.g Eutrema salsugineum HOM05D004420 ORTHO05D005048 1.1e-26 125.2 342 35.7
BcaB08g34743 Brassica carinata HOM05D004420 ORTHO05D005048 2.4e-26 124.0 327 34.6
Lsat_1_v5_gn_8_112420 Lactuca sativa HOM05D004420 ORTHO05D005048 4.1e-26 123.2 369 32.8
Lsat_1_v5_gn_3_67941 Lactuca sativa HOM05D004420 ORTHO05D005048 1.6e-25 121.3 226 49.1
BolC3t18106H Brassica oleracea HOM05D004420 ORTHO05D005048 2.0e-25 120.9 307 34.9
Solyc02g082570.3 Solanum lycopersicum HOM05D004420 ORTHO05D005048 4.5e-25 119.8 154 58.4
CDE05G3647 Ceratophyllum demersum HOM05D004420 ORTHO05D005048 5.9e-25 119.4 368 31.2
A06p33900 Brassica napus HOM05D004420 ORTHO05D005048 2.9e-24 117.1 301 35.5
BraA06t26325Z Brassica rapa HOM05D004420 ORTHO05D005048 3.8e-24 116.7 301 35.5
Sp7g33290 Schrenkiella parvula HOM05D004420 ORTHO05D005048 4.2e-23 113.2 315 35.2
BcaC01g02911 Brassica carinata HOM05D004420 ORTHO05D005048 1.4e-21 108.2 307 33.2
C03p58480 Brassica napus HOM05D004420 ORTHO05D005048 1.4e-21 108.2 307 33.2
BraA07t28141Z Brassica rapa HOM05D004420 ORTHO05D005048 9.1e-18 95.5 330 34.2
BcaNung03633 Brassica carinata HOM05D004420 ORTHO05D005048 1.2e-17 95.1 297 31.6
BolC7t40973H Brassica oleracea HOM05D004420 ORTHO05D005048 1.2e-17 95.1 340 35.3
AT2G17540 Arabidopsis thaliana HOM05D004420 ORTHO05D005048 6.5e-16 89.4 376 28.5
CDE05G1602 Ceratophyllum demersum HOM05D001617 ORTHO05D008611 2.5e-15 87.4 334 30.2
A01p03090 Brassica napus HOM05D004420 ORTHO05D005048 5.5e-15 86.3 297 30.6
BraA01t00293Z Brassica rapa HOM05D004420 ORTHO05D005048 3.0e-13 80.5 297 29.3
THA.LOC104804296 Tarenaya hassleriana HOM05D004420 ORTHO05D005048 3.0e-13 80.5 174 34.5
CARHR107720 Cardamine hirsuta HOM05D004420 ORTHO05D005048 8.3e-11 72.4 377 29.2
BolC1t00331H Brassica oleracea HOM05D004420 ORTHO05D005048 4.1e-10 70.1 200 35.0
BcaNung00585 Brassica carinata HOM05D004420 ORTHO05D005048 5.9e-09 66.2 197 35.0
C01p03440 Brassica napus HOM05D004420 ORTHO05D005048 5.9e-09 66.2 197 35.0
Thhalv10022985m.g Eutrema salsugineum HOM05D004420 ORTHO05D005048 6.6e-08 62.8 139 36.7
C07p61200 Brassica napus HOM05D004420 ORTHO05D005048 3.3e-07 60.5 302 27.8
BolC7t46546H Brassica oleracea HOM05D004420 ORTHO05D005048 5.5e-07 59.7 302 27.2
BraA03t15434Z Brassica rapa HOM05D004420 ORTHO05D005048 5.5e-07 59.7 303 28.7
A03p63630 Brassica napus HOM05D004420 ORTHO05D005048 1.6e-06 58.2 303 28.1
Sp2g30690 Schrenkiella parvula HOM05D023070 ORTHO05D023654 1.6e-06 58.2 225 36.9
Carub.0008s2852 Capsella rubella HOM05D023070 ORTHO05D023654 2.8e-06 57.4 106 51.9


User provided reference genes

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