Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.08G181500 Carya illinoinensis HOM05D004607 ORTHO05D005836 3.2e-93 345.1 178 100.0
Haze_03657 Corylus avellana HOM05D004607 ORTHO05D005836 1.7e-67 259.6 155 87.7
Haze_03663 Corylus avellana HOM05D004607 ORTHO05D005836 1.7e-67 259.6 155 87.7
CiPaw.07G003100 Carya illinoinensis HOM05D004607 ORTHO05D005836 3.9e-67 258.5 175 77.1
MD02G1117000 Malus domestica HOM05D004607 ORTHO05D005836 3.9e-67 258.5 180 74.4
RcHm_v2.0_Chr2g0097211 Rosa chinensis HOM05D004607 ORTHO05D005836 8.6e-67 257.3 180 75.6
MD02G1116800 Malus domestica HOM05D004607 ORTHO05D005836 1.1e-66 256.9 180 74.4
Dinv40187 Davidia involucrata HOM05D004607 ORTHO05D005836 7.3e-66 254.2 173 77.5
Prupe.7G182100 Prunus persica HOM05D004607 ORTHO05D005836 7.3e-66 254.2 180 75.6
FAN28G2666 Fragaria x ananassa HOM05D004607 ORTHO05D005836 4.7e-65 251.5 175 73.7
Potri.005G101300 Populus trichocarpa HOM05D004607 ORTHO05D005836 4.7e-65 251.5 181 75.1
Haze_04009 Corylus avellana HOM05D004607 ORTHO05D005836 6.2e-65 251.1 155 84.5
CANSAT80G1685 Cannabis sativa HOM05D004607 ORTHO05D005836 2.4e-64 249.2 169 76.3
CANSAT80G2088 Cannabis sativa HOM05D004607 ORTHO05D005836 2.4e-64 249.2 169 76.3
FvH4_1g10350 Fragaria vesca HOM05D004607 ORTHO05D005836 1.2e-63 246.9 175 74.3
CsaV3_3G000280 Cucumis sativus L. HOM05D004607 ORTHO05D005836 1.7e-62 243.0 176 72.7
Dinv08165 Davidia involucrata HOM05D004607 ORTHO05D005836 3.8e-62 241.9 173 74.0
Eucgr.I00568 Eucalyptus grandis HOM05D004607 ORTHO05D005836 4.9e-62 241.5 178 69.7
GSVIVG01026644001 Vitis vinifera HOM05D004607 ORTHO05D005836 3.2e-61 238.8 172 72.7
TWI09G0436 Tripterygium wilfordii HOM05D004607 ORTHO05D005836 7.1e-61 237.7 178 73.6
Actinidia17362 Actinidia chinensis HOM05D004607 ORTHO05D005836 1.6e-60 236.5 173 71.1
CSS0013050 Camellia sinensis var. sinensis HOM05D004607 ORTHO05D005836 2.1e-60 236.1 176 68.8
TWI73G0051 Tripterygium wilfordii HOM05D004607 ORTHO05D005836 3.5e-60 235.3 178 73.0
CSS0035278 Camellia sinensis var. sinensis HOM05D004607 ORTHO05D005836 1.3e-59 233.4 174 68.4
PGR042G1958 Punica granatum HOM05D004607 ORTHO05D005836 1.3e-59 233.4 175 68.6
Cpa.g.c27001.3 Carica papaya HOM05D004607 ORTHO05D005836 3.9e-59 231.9 177 71.8
Hma1.2p1_0300F.1_g118020 Hydrangea macrophylla HOM05D004607 ORTHO05D005836 4.3e-58 228.4 167 70.7
Actinidia22900 Actinidia chinensis HOM05D004607 ORTHO05D005836 9.6e-58 227.3 175 69.1
Peaxi162Scf01051g00133 Petunia axillaris HOM05D004607 ORTHO05D005836 2.4e-56 222.6 173 68.2
FAN26G2101 Fragaria x ananassa HOM05D004607 ORTHO05D005836 2.0e-55 219.5 207 61.4
Migut.C01149 Erythranthe guttata HOM05D004607 ORTHO05D005836 2.6e-55 219.2 174 62.6
Carub.0007s2507 Capsella rubella HOM05D004607 ORTHO05D005836 2.2e-54 216.1 173 63.6
Migut.G00971 Erythranthe guttata HOM05D004607 ORTHO05D005836 3.8e-54 215.3 174 61.5
Migut.K01195 Erythranthe guttata HOM05D004607 ORTHO05D005836 3.8e-54 215.3 174 61.5
AL7G38550 Arabidopsis lyrata HOM05D004607 ORTHO05D005836 1.1e-53 213.8 173 64.2
Glyma.09G198400 Glycine max HOM05D004607 ORTHO05D005836 1.1e-53 213.8 176 64.2
Solyc02g082710.3 Solanum lycopersicum HOM05D004607 ORTHO05D005836 1.1e-53 213.8 179 64.8
Nitab4.5_0011694g0010 Nicotiana tabacum HOM05D004607 ORTHO05D005836 1.4e-53 213.4 174 66.7
Sopen02g027460 Solanum pennellii HOM05D004607 ORTHO05D005836 3.2e-53 212.2 179 64.2
BolC8t48369H Brassica oleracea HOM05D004607 ORTHO05D005836 5.4e-53 211.5 173 63.0
BraA08t33239Z Brassica rapa HOM05D004607 ORTHO05D005836 5.4e-53 211.5 173 63.0
CARHR222820 Cardamine hirsuta HOM05D004607 ORTHO05D005836 5.4e-53 211.5 173 61.8
Cc07_g11810 Coffea canephora HOM05D004607 ORTHO05D005836 9.3e-53 210.7 179 64.8
Lalb_Chr05g0229661 Lupinus albus HOM05D004607 ORTHO05D005836 9.3e-53 210.7 164 68.9
Sp7g14990 Schrenkiella parvula HOM05D004607 ORTHO05D005836 2.1e-52 209.5 173 62.4
Ca_02856_v3 Cicer arietinum L. HOM05D004607 ORTHO05D005836 3.5e-52 208.8 177 62.1
ClCG10G000250 Citrullus lanatus HOM05D004607 ORTHO05D005836 3.5e-52 208.8 154 71.4
Aa31LG2G12510 Aethionema arabicum HOM05D004607 ORTHO05D005836 4.6e-52 208.4 173 60.7
AT4G16444 Arabidopsis thaliana HOM05D004607 ORTHO05D005836 4.6e-52 208.4 173 63.0
FvH4_1g10370 Fragaria vesca HOM05D004607 ORTHO05D005836 6.0e-52 208.0 190 62.1
Gorai.010G212400 Gossypium raimondii HOM05D004607 ORTHO05D005836 6.0e-52 208.0 162 66.0
MSTRG.1461 Avicennia marina HOM05D004607 ORTHO05D005836 1.0e-51 207.2 173 61.8
CAN.G1238.9 Capsicum annuum HOM05D004607 ORTHO05D005836 1.3e-51 206.8 168 65.5
Thecc.01G005800 Theobroma cacao HOM05D004607 ORTHO05D005836 1.8e-51 206.5 156 69.9
Lsat_1_v5_gn_3_68061 Lactuca sativa HOM05D004607 ORTHO05D005836 3.9e-51 205.3 173 63.0
Lj4g0003075 Lotus japonicus HOM05D004607 ORTHO05D005836 5.1e-51 204.9 169 62.7
A03p49830 Brassica napus HOM05D004607 ORTHO05D005836 6.7e-51 204.5 176 59.7
BolC7t45311H Brassica oleracea HOM05D004607 ORTHO05D005836 6.7e-51 204.5 174 59.8
BraA03t14078Z Brassica rapa HOM05D004607 ORTHO05D005836 6.7e-51 204.5 176 59.7
THA.LOC104819160 Tarenaya hassleriana HOM05D004607 ORTHO05D005836 8.7e-51 204.1 175 62.3
Nitab4.5_0000467g0060 Nicotiana tabacum HOM05D004607 ORTHO05D005836 1.1e-50 203.8 170 62.9
Thhalv10026376m.g Eutrema salsugineum HOM05D004607 ORTHO05D005836 2.5e-50 202.6 163 64.4
Sopen02g012590 Solanum pennellii HOM05D004607 ORTHO05D005836 2.5e-50 202.6 170 62.4
Solyc02g038815.1 Solanum lycopersicum HOM05D004607 ORTHO05D005836 3.3e-50 202.2 170 61.8
C07p47890 Brassica napus HOM05D004607 ORTHO05D005836 5.6e-50 201.4 175 60.0
Ciclev10016602m.g Citrus clementina HOM05D004607 ORTHO05D005836 9.6e-50 200.7 156 69.9
Medtr8g073600 Medicago truncatula HOM05D004607 ORTHO05D005836 9.6e-50 200.7 175 61.7
BcaC07g37988 Brassica carinata HOM05D004607 ORTHO05D005836 3.7e-49 198.7 174 60.9
A08p12190 Brassica napus HOM05D004607 ORTHO05D005836 8.1e-49 197.6 198 55.1
Lalb_Chr09g0324751 Lupinus albus HOM05D004607 ORTHO05D005836 1.1e-48 197.2 177 62.7
THA.LOC104826422 Tarenaya hassleriana HOM05D004607 ORTHO05D005836 1.1e-48 197.2 175 61.1
vmacro23502 Vaccinium macrocarpon HOM05D004607 ORTHO05D005836 2.4e-48 196.1 157 68.2
Sed0016741 Sechium edule HOM05D004607 ORTHO05D005836 3.1e-48 195.7 130 76.9
HanXRQChr16g0531851 Helianthus annuus HOM05D004607 ORTHO05D005836 1.2e-47 193.7 180 58.9
Nitab4.5_0000702g0180 Nicotiana tabacum HOM05D004607 ORTHO05D005836 9.9e-47 190.7 169 62.7
Nn2g14487 Nelumbo nucifera HOM05D004607 ORTHO05D005836 4.9e-46 188.3 174 57.5
Duzib187G1597 Durio zibethinus HOM05D004607 ORTHO05D005836 8.4e-46 187.6 169 63.3
Lalb_Chr05g0214781 Lupinus albus HOM05D004607 ORTHO05D005836 7.1e-45 184.5 177 59.3
Glyma.11G085750 Glycine max HOM05D004607 ORTHO05D005836 1.6e-44 183.3 165 61.2
Glyma.01G158900 Glycine max HOM05D004607 ORTHO05D005836 6.0e-44 181.4 177 59.9
PGSC0003DMG400001520 Solanum tuberosum HOM05D004607 ORTHO05D005836 6.0e-44 181.4 158 62.7
Sabra05G0083700 Salix brachista HOM05D004607 ORTHO05D005836 1.0e-43 180.6 141 71.6
TAR628G0874 Trochodendron aralioides HOM05D004607 ORTHO05D005836 1.8e-43 179.9 154 62.3
Lj2g0013322 Lotus japonicus HOM05D004607 ORTHO05D005836 2.3e-43 179.5 179 56.4
Migut.M00637 Erythranthe guttata HOM05D004607 ORTHO05D005836 3.0e-43 179.1 133 65.4
MD15G1231800 Malus domestica HOM05D004607 ORTHO05D005836 3.0e-43 179.1 280 42.5
MBI11_g22240_MAGBIO Magnolia biondii HOM05D004607 ORTHO05D005836 3.9e-43 178.7 163 60.1
Phvul.003G269900 Phaseolus vulgaris HOM05D004607 ORTHO05D005836 6.7e-43 177.9 176 56.2
SalBow7G0705 Salvia bowleyana HOM05D004607 ORTHO05D005836 8.7e-43 177.6 224 46.4
HanXRQChr09g0259831 Helianthus annuus HOM05D004607 ORTHO05D005836 3.3e-42 175.6 162 59.3
ATR0807G168 Amborella trichopoda HOM05D004607 ORTHO05D005836 4.3e-42 175.3 163 57.1
Psat4g104720 Pisum sativum HOM05D004607 ORTHO05D026060 4.3e-42 175.3 157 60.5
ECA246G3880 Erigeron canadensis HOM05D004607 ORTHO05D005836 5.6e-42 174.9 162 57.4
SalBow7G2290 Salvia bowleyana HOM05D004607 ORTHO05D005836 5.6e-42 174.9 217 47.9
Phvul.002G116550 Phaseolus vulgaris HOM05D004607 ORTHO05D005836 2.8e-41 172.6 165 55.2
Atru.chr8.743 Acer truncatum HOM05D004607 ORTHO05D005836 6.2e-41 171.4 131 70.2
SGA_v2.0_scaffold52G18984 Striga asiatica HOM05D004607 ORTHO05D005836 8.2e-41 171.0 145 58.6
BcaNung00194 Brassica carinata HOM05D004607 ORTHO05D005836 1.4e-40 170.2 173 55.5
SalBow7G4137 Salvia bowleyana HOM05D004607 ORTHO05D005836 1.4e-40 170.2 225 46.2
Duzib264G0749 Durio zibethinus HOM05D004607 ORTHO05D005836 2.4e-40 169.5 140 67.9
Psat0s2561g0240 Pisum sativum HOM05D004607 ORTHO05D005836 2.4e-40 169.5 167 56.9
Manes.14G160966 Manihot esculenta HOM05D004607 ORTHO05D005836 5.3e-40 168.3 176 53.4
PSO761G0125 Papaver somniferum HOM05D004607 ORTHO05D005836 5.3e-40 168.3 172 52.9
unitig_26.g9912 Utricularia gibba HOM05D004607 ORTHO05D005836 5.3e-40 168.3 163 55.2
PSO210G1290 Papaver somniferum HOM05D004607 ORTHO05D005836 1.2e-39 167.2 172 52.3
Sc16g0000240 Simmondsia chinensis HOM05D004607 ORTHO05D005836 1.0e-38 164.1 154 57.8
Migut.N00197 Erythranthe guttata HOM05D004607 ORTHO05D005836 1.3e-38 163.7 157 55.4
QL06p052929 Quercus lobata HOM05D004607 ORTHO05D005836 1.7e-38 163.3 90 85.6
Aqoxy5G01013 Aquilegia oxysepala HOM05D004607 ORTHO05D005836 3.8e-38 162.2 152 56.6
TPR.G33861 Trifolium pratense HOM05D004607 ORTHO05D005836 4.9e-38 161.8 168 55.4
TPR.G21990 Trifolium pratense HOM05D004607 ORTHO05D005836 1.4e-37 160.2 167 50.9
EL10Ac3g05419 Beta vulgaris HOM05D004607 ORTHO05D005836 4.2e-37 158.7 145 57.9
Lsat_1_v5_gn_8_112021 Lactuca sativa HOM05D000005 ORTHO05D000012 4.2e-37 158.7 141 60.3
CDE05G3414 Ceratophyllum demersum HOM05D004607 ORTHO05D005836 5.5e-37 158.3 138 62.3
arahy.Tifrunner.gnm1.ann1.322DBQ Arachis hypogaea HOM05D004607 ORTHO05D005836 9.3e-37 157.5 181 50.8
arahy.Tifrunner.gnm1.ann1.WAU4HL Arachis hypogaea HOM05D004607 ORTHO05D005836 9.3e-37 157.5 181 50.8
COL.COLO4_13415 Corchorus olitorius HOM05D004607 ORTHO05D005836 1.2e-36 157.1 143 63.6
Zm00001eb320900 Zea mays HOM05D004607 ORTHO05D005836 1.2e-36 157.1 163 54.0
Os06g0198700 Oryza sativa ssp. japonica HOM05D004607 ORTHO05D005836 2.7e-36 156.0 163 52.1
AUR62031422 Chenopodium quinoa HOM05D004607 ORTHO05D005836 8.7e-35 151.0 144 57.6
AUR62021120 Chenopodium quinoa HOM05D004607 ORTHO05D005836 1.6e-33 146.7 153 54.9
Nitab4.5_0001365g0040 Nicotiana tabacum HOM05D004607 ORTHO05D005836 3.7e-33 145.6 155 52.3
Zm00001eb373950 Zea mays HOM05D004607 ORTHO05D005836 6.3e-33 144.8 160 51.2
HPP92_002453 Vanilla planifolia HOM05D004607 ORTHO05D005836 2.4e-32 142.9 172 51.7
CDE05G1839 Ceratophyllum demersum HOM05D001594 ORTHO05D006997 5.3e-32 141.7 185 48.6
CSS0045229 Camellia sinensis var. sinensis HOM05D004607 ORTHO05D005836 1.7e-30 136.7 174 48.3
Rhsim10G0196300 Rhododendron simsii HOM05D004607 ORTHO05D005836 2.9e-30 136.0 144 55.6
ECA232G4775 Erigeron canadensis HOM05D004607 ORTHO05D005836 3.8e-30 135.6 153 51.6
unitig_749.g13934 Utricularia gibba HOM05D004607 ORTHO05D005836 4.6e-28 128.6 141 51.8
SGA_v2.0_scaffold24G10477 Striga asiatica HOM05D004607 ORTHO05D005836 3.9e-27 125.6 173 42.2
Hund00045 Selenicereus undatus HOM05D004607 ORTHO05D005836 8.8e-27 124.4 160 47.5
QL06p052933 Quercus lobata HOM05D004607 ORTHO05D005836 1.5e-26 123.6 89 78.7
Peaxi162Scf00580g00027 Petunia axillaris HOM05D004607 ORTHO05D005836 1.9e-26 123.2 177 46.3
TAR376G0723 Trochodendron aralioides HOM05D004607 ORTHO05D005836 1.7e-25 120.2 113 60.2
PGSC0003DMG400017476 Solanum tuberosum HOM05D004607 ORTHO05D005836 6.3e-25 118.2 84 64.3
CAN.G328.18 Capsicum annuum HOM05D004607 ORTHO05D005836 1.8e-24 116.7 91 62.6
MELO3C013722.2 Cucumis melo HOM05D004607 ORTHO05D005836 2.6e-23 112.8 85 72.9
Duzib147G0723 Durio zibethinus HOM05D004607 ORTHO05D005836 4.2e-21 105.5 88 72.7
Glyma.16G116500 Glycine max HOM05D004607 ORTHO05D005836 3.7e-17 92.4 92 58.7
VMungo1215G0163 Vigna mungo HOM05D004607 ORTHO05D005836 4.8e-17 92.0 102 55.9
Gohir.D06G180900 Gossypium hirsutum HOM05D004607 ORTHO05D005836 1.1e-16 90.9 80 65.0
Rhsim10G0196100 Rhododendron simsii HOM05D004607 ORTHO05D005836 1.1e-16 90.9 146 45.2
FAN23G1441 Fragaria x ananassa HOM05D004607 ORTHO05D005836 1.8e-16 90.1 84 64.3
Gohir.A06G172006 Gossypium hirsutum HOM05D004607 ORTHO05D005836 9.1e-16 87.8 80 62.5
Mapoly0007s0238 Marchantia polymorpha HOM05D004607 ORTHO05D005836 4.5e-15 85.5 165 35.8
Pp3c7_8860 Physcomitrium patens HOM05D004607 ORTHO05D005836 2.5e-13 79.7 178 33.7
AagrBONN_evm.TU.Sc2ySwM_362.230 Anthoceros agrestis HOM05D004607 ORTHO05D005836 7.2e-13 78.2 139 41.0
Cpa.g.sc117.83 Carica papaya HOM05D004607 ORTHO05D005836 3.3e-10 69.3 63 65.1
CBR_g18647 Chara braunii HOM05D004607 ORTHO05D005836 2.2e-09 66.6 167 33.5
FAN19G1486 Fragaria x ananassa HOM05D004607 ORTHO05D005836 1.4e-08 63.9 67 61.2
VMungo0251G1148 Vigna mungo HOM05D004607 ORTHO05D005836 5.3e-08 62.0 92 46.7
VMungo0703G0001 Vigna mungo HOM05D004607 ORTHO05D005836 1.6e-07 60.5 90 47.8


User provided reference genes

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