Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.08G173100 Carya illinoinensis HOM05D000737 ORTHO05D128382 1.0e-34 149.4 71 100.0
CiPaw.03G162200 Carya illinoinensis HOM05D000737 ORTHO05D126998 6.8e-23 110.2 56 94.6
CiPaw.13G143500 Carya illinoinensis HOM05D000737 ORTHO05D000581 4.0e-15 84.3 41 97.6
CiPaw.13G143300 Carya illinoinensis HOM05D000737 ORTHO05D000581 4.9e-13 77.4 41 87.8
CiPaw.13G143700 Carya illinoinensis HOM05D000737 ORTHO05D000581 3.2e-12 74.7 41 87.8
CiPaw.13G143400 Carya illinoinensis HOM05D000737 ORTHO05D000581 8.6e-10 66.6 41 75.6
Manes.11G154400 Manihot esculenta HOM05D000737 ORTHO05D000581 4.7e-08 60.8 47 66.0
COL.COLO4_19244 Corchorus olitorius HOM05D000737 ORTHO05D000581 8.1e-08 60.1 41 65.9
Cc01_g04320 Coffea canephora HOM05D000737 ORTHO05D000581 1.1e-07 59.7 41 68.3
Lalb_Chr22g0350481 Lupinus albus HOM05D000737 ORTHO05D000581 1.1e-07 59.7 41 65.9
Ciclev10030021m.g Citrus clementina HOM05D000737 ORTHO05D000581 1.4e-07 59.3 41 63.4
Manes.04G011700 Manihot esculenta HOM05D000737 ORTHO05D000581 1.4e-07 59.3 47 63.8
Potri.009G002200 Populus trichocarpa HOM05D000737 ORTHO05D000581 2.4e-07 58.5 41 65.9
CiPaw.13G143200 Carya illinoinensis HOM05D000737 ORTHO05D000581 3.1e-07 58.2 41 68.3
Gohir.A09G087300 Gossypium hirsutum HOM05D000737 ORTHO05D000581 3.1e-07 58.2 41 63.4
Cfa010122 Carpinus fangiana HOM05D000737 ORTHO05D000581 4.0e-07 57.8 41 65.9
Gohir.D09G087200 Gossypium hirsutum HOM05D000737 ORTHO05D000581 4.0e-07 57.8 41 63.4
Gorai.006G103600 Gossypium raimondii HOM05D000737 ORTHO05D000581 4.0e-07 57.8 41 63.4
MELO3C021473.2 Cucumis melo HOM05D000737 ORTHO05D000581 5.2e-07 57.4 41 63.4
MSTRG.17747 Avicennia marina HOM05D000737 ORTHO05D000581 6.8e-07 57.0 41 63.4
Cfa010126 Carpinus fangiana HOM05D000737 ORTHO05D000581 6.8e-07 57.0 41 65.9
Cfa010123 Carpinus fangiana HOM05D000737 ORTHO05D000581 1.5e-06 55.8 41 63.4
ClCG02G021730 Citrullus lanatus HOM05D000737 ORTHO05D000581 1.5e-06 55.8 41 61.0
QL04p040187 Quercus lobata HOM05D000737 ORTHO05D000581 1.5e-06 55.8 56 51.8
CSS0013799 Camellia sinensis var. sinensis HOM05D000737 ORTHO05D000581 2.0e-06 55.5 41 61.0
Cc01_g03880 Coffea canephora HOM05D000737 ORTHO05D000581 2.0e-06 55.5 41 63.4
CsaV3_6G014520 Cucumis sativus L. HOM05D000737 ORTHO05D000581 2.6e-06 55.1 41 61.0
Migut.N02532 Erythranthe guttata HOM05D000737 ORTHO05D000581 2.6e-06 55.1 41 58.5
Eucgr.J00403 Eucalyptus grandis HOM05D000737 ORTHO05D000581 2.6e-06 55.1 41 63.4
Glyma.12G179600 Glycine max HOM05D000737 ORTHO05D000581 2.6e-06 55.1 41 58.5
Potri.001G213200 Populus trichocarpa HOM05D000737 ORTHO05D000581 2.6e-06 55.1 41 61.0
CSS0032643 Camellia sinensis var. sinensis HOM05D000737 ORTHO05D000581 3.4e-06 54.7 41 63.4
Lj3g0023665 Lotus japonicus HOM05D000737 ORTHO05D000581 3.4e-06 54.7 41 65.9
PSO339G1119 Papaver somniferum HOM05D000737 ORTHO05D000581 3.4e-06 54.7 41 61.0
PGR031G0390 Punica granatum HOM05D000737 ORTHO05D000581 3.4e-06 54.7 48 58.3
PGR031G2864 Punica granatum HOM05D000737 ORTHO05D000581 3.4e-06 54.7 48 58.3
Cc01_g10080 Coffea canephora HOM05D000737 ORTHO05D000581 4.4e-06 54.3 41 63.4
Dinv00575 Davidia involucrata HOM05D000737 ORTHO05D000581 4.4e-06 54.3 42 59.5
Lalb_Chr10g0096041 Lupinus albus HOM05D000737 ORTHO05D000581 4.4e-06 54.3 41 56.1
Aqoxy1G01029 Aquilegia oxysepala HOM05D000737 ORTHO05D000581 5.8e-06 53.9 41 61.0
Dinv12562 Davidia involucrata HOM05D000737 ORTHO05D000581 5.8e-06 53.9 41 63.4
Duzib168G0677 Durio zibethinus HOM05D000737 ORTHO05D000581 5.8e-06 53.9 41 58.5
Hma1.2p1_0051F.1_g029670 Hydrangea macrophylla HOM05D000737 ORTHO05D000581 5.8e-06 53.9 41 61.0
Nn2g12630 Nelumbo nucifera HOM05D000737 ORTHO05D000581 5.8e-06 53.9 41 58.5
PGR119G1895 Punica granatum HOM05D000737 ORTHO05D000581 5.8e-06 53.9 41 61.0
TWI75G1260 Tripterygium wilfordii HOM05D000737 ORTHO05D000581 5.8e-06 53.9 41 61.0
AL6G34000 Arabidopsis lyrata HOM05D000737 ORTHO05D000581 7.6e-06 53.5 41 56.1
Eucgr.J00219 Eucalyptus grandis HOM05D000737 ORTHO05D000581 7.6e-06 53.5 42 59.5
PGR119G0961 Punica granatum HOM05D000737 ORTHO05D000581 7.6e-06 53.5 41 58.5
TWI38G0685 Tripterygium wilfordii HOM05D000737 ORTHO05D000581 7.6e-06 53.5 47 55.3
TWI63G0598 Tripterygium wilfordii HOM05D000737 ORTHO05D000581 7.6e-06 53.5 41 58.5
TAR633G0694 Trochodendron aralioides HOM05D000737 ORTHO05D000581 7.6e-06 53.5 41 61.0
TAR633G1185 Trochodendron aralioides HOM05D000737 ORTHO05D000581 7.6e-06 53.5 41 61.0
Aqoxy1G00737 Aquilegia oxysepala HOM05D000737 ORTHO05D000581 9.9e-06 53.1 41 58.5
arahy.Tifrunner.gnm1.ann1.MX4KCR Arachis hypogaea HOM05D000737 ORTHO05D000581 9.9e-06 53.1 41 61.0
Cc01_g10090 Coffea canephora HOM05D000737 ORTHO05D000581 9.9e-06 53.1 40 57.5
Dinv19169 Davidia involucrata HOM05D000737 ORTHO05D000581 9.9e-06 53.1 41 61.0
Eucgr.J00404 Eucalyptus grandis HOM05D000737 ORTHO05D000581 9.9e-06 53.1 41 58.5
Eucgr.J00407 Eucalyptus grandis HOM05D000737 ORTHO05D000581 9.9e-06 53.1 41 61.0
TPR.G32373 Trifolium pratense HOM05D000737 ORTHO05D000581 9.9e-06 53.1 44 56.8


User provided reference genes

Program Settings