Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.08G172300 Carya illinoinensis HOM05D005858 ORTHO05D006982 8.0e-20 99.4 47 100.0
CiPaw.08G040300 Carya illinoinensis HOM05D005858 ORTHO05D006982 2.2e-14 81.3 47 78.7
QL02p095637 Quercus lobata HOM05D005858 ORTHO05D006982 3.8e-14 80.5 45 80.0
Cfa013549 Carpinus fangiana HOM05D005858 ORTHO05D006982 5.0e-14 80.1 47 76.6
Haze_22170 Corylus avellana HOM05D005858 ORTHO05D006982 1.9e-13 78.2 47 74.5
Duzib187G2004 Durio zibethinus HOM05D005858 ORTHO05D006982 2.5e-13 77.8 47 74.5
Prupe.1G097500 Prunus persica HOM05D005858 ORTHO05D006982 3.2e-13 77.4 47 74.5
FvH4_4g09670 Fragaria vesca HOM05D005858 ORTHO05D006982 9.4e-13 75.9 47 72.3
FAN12G2717 Fragaria x ananassa HOM05D005858 ORTHO05D006982 9.4e-13 75.9 47 72.3
FAN12G2910 Fragaria x ananassa HOM05D005858 ORTHO05D006982 9.4e-13 75.9 47 72.3
RcHm_v2.0_Chr4g0404961 Rosa chinensis HOM05D005858 ORTHO05D006982 9.4e-13 75.9 47 72.3
Atru.chr7.494 Acer truncatum HOM05D005858 ORTHO05D006982 1.6e-12 75.1 47 70.2
Thecc.09G160700 Theobroma cacao HOM05D005858 ORTHO05D006982 2.1e-12 74.7 47 72.3
FAN22G1041 Fragaria x ananassa HOM05D005858 ORTHO05D006982 4.7e-12 73.6 47 70.2
Nn8g40237 Nelumbo nucifera HOM05D005858 ORTHO05D006982 4.7e-12 73.6 47 70.2
TAR383G0158 Trochodendron aralioides HOM05D005858 ORTHO05D006982 6.1e-12 73.2 47 72.3
MD13G1260700 Malus domestica HOM05D005858 ORTHO05D006982 1.0e-11 72.4 47 68.1
Actinidia20954 Actinidia chinensis HOM05D005858 ORTHO05D006982 1.8e-11 71.6 47 68.1
Aqoxy7G03242 Aquilegia oxysepala HOM05D005858 ORTHO05D006982 1.8e-11 71.6 47 68.1
Duzib168G1554 Durio zibethinus HOM05D005858 ORTHO05D006982 1.8e-11 71.6 47 66.0
FAN07G0488 Fragaria x ananassa HOM05D005858 ORTHO05D006982 1.8e-11 71.6 47 68.1
Rhsim01G0012300 Rhododendron simsii HOM05D005858 ORTHO05D006982 1.8e-11 71.6 47 70.2
Peaxi162Scf00525g00820 Petunia axillaris HOM05D005858 ORTHO05D006982 2.3e-11 71.2 47 68.1
COL.COLO4_04533 Corchorus olitorius HOM05D005858 ORTHO05D006982 3.0e-11 70.9 47 70.2
SalBow6G6404 Salvia bowleyana HOM05D005858 ORTHO05D006982 3.0e-11 70.9 47 66.0
Dinv42786 Davidia involucrata HOM05D005858 ORTHO05D006982 5.2e-11 70.1 47 68.1
Dinv43315 Davidia involucrata HOM05D005858 ORTHO05D006982 5.2e-11 70.1 47 68.1
MD16G1262400 Malus domestica HOM05D005858 ORTHO05D006982 5.2e-11 70.1 47 68.1
Aqoxy5G02254 Aquilegia oxysepala HOM05D005858 ORTHO05D006982 6.8e-11 69.7 47 68.1
Sopen07g002410 Solanum pennellii HOM05D005858 ORTHO05D006982 8.8e-11 69.3 47 66.0
PGSC0003DMG400011172 Solanum tuberosum HOM05D005858 ORTHO05D006982 8.8e-11 69.3 47 66.0
CAN.G1870.1 Capsicum annuum HOM05D005858 ORTHO05D006982 1.2e-10 68.9 47 66.0
Eucgr.C00211 Eucalyptus grandis HOM05D005858 ORTHO05D006982 1.2e-10 68.9 47 66.0
FAN17G1719 Fragaria x ananassa HOM05D005858 ORTHO05D006982 1.2e-10 68.9 47 66.0
Oeu035673.1 Olea europaea HOM05D005858 ORTHO05D006982 2.6e-10 67.8 47 63.8
Ciclev10008554m.g Citrus clementina HOM05D005858 ORTHO05D006982 3.4e-10 67.4 47 63.8
Medtr4g129510 Medicago truncatula HOM05D005858 ORTHO05D006982 3.4e-10 67.4 44 68.2
Lj4g0010700 Lotus japonicus HOM05D005858 ORTHO05D006982 4.4e-10 67.0 44 65.9
Lalb_Chr12g0199051 Lupinus albus HOM05D005858 ORTHO05D006982 4.4e-10 67.0 39 76.9
Nitab4.5_0005551g0040 Nicotiana tabacum HOM05D005858 ORTHO05D006982 7.5e-10 66.2 47 63.8
GSVIVG01023724001 Vitis vinifera HOM05D005858 ORTHO05D006982 7.5e-10 66.2 47 61.7
CSS0006326 Camellia sinensis var. sinensis HOM05D005858 ORTHO05D006982 9.8e-10 65.9 45 64.4
Glyma.17G068700 Glycine max HOM05D005858 ORTHO05D006982 9.8e-10 65.9 39 74.4
VMungo1215G2346 Vigna mungo HOM05D005858 ORTHO05D006982 9.8e-10 65.9 39 74.4
Migut.J01417 Erythranthe guttata HOM05D005858 ORTHO05D006982 1.3e-09 65.5 47 59.6
Glyma.13G091600 Glycine max HOM05D005858 ORTHO05D006982 1.3e-09 65.5 39 74.4
Nn2g12544 Nelumbo nucifera HOM05D005858 ORTHO05D006982 1.7e-09 65.1 47 63.8
Psat0s235g0040 Pisum sativum HOM05D005858 ORTHO05D006982 1.7e-09 65.1 44 63.6
TPR.G5337 Trifolium pratense HOM05D005858 ORTHO05D006982 1.7e-09 65.1 44 63.6
Cc06_g14020 Coffea canephora HOM05D005858 ORTHO05D006982 2.2e-09 64.7 47 59.6
Ca_21182_v3 Cicer arietinum L. HOM05D005858 ORTHO05D006982 2.8e-09 64.3 44 63.6
Gohir.D04G086000 Gossypium hirsutum HOM05D005858 ORTHO05D006982 2.8e-09 64.3 42 71.4
Manes.06G025900 Manihot esculenta HOM05D005858 ORTHO05D006982 2.8e-09 64.3 47 61.7
Phvul.003G151200 Phaseolus vulgaris HOM05D005858 ORTHO05D006982 2.8e-09 64.3 39 71.8
Nitab4.5_0005985g0060 Nicotiana tabacum HOM05D005858 ORTHO05D006982 3.7e-09 63.9 47 61.7
GSVIVG01023744001 Vitis vinifera HOM05D005858 ORTHO05D006982 3.7e-09 63.9 42 66.7
Dinv41306 Davidia involucrata HOM05D005858 ORTHO05D006982 4.8e-09 63.5 47 61.7
Sabra18G0085500 Salix brachista HOM05D005858 ORTHO05D006982 6.3e-09 63.2 47 59.6
Gorai.012G096000 Gossypium raimondii HOM05D005858 ORTHO05D006982 8.3e-09 62.8 42 69.0
Potri.018G099000 Populus trichocarpa HOM05D005858 ORTHO05D006982 8.3e-09 62.8 47 59.6
TWI32G1032 Tripterygium wilfordii HOM05D005858 ORTHO05D006982 8.3e-09 62.8 44 63.6
Gohir.A05G345842 Gossypium hirsutum HOM05D005858 ORTHO05D006982 1.8e-08 61.6 42 66.7
Hund26407 Selenicereus undatus HOM05D005858 ORTHO05D006982 2.4e-08 61.2 43 65.1
Lalb_Chr07g0180091 Lupinus albus HOM05D005858 ORTHO05D006982 4.1e-08 60.5 39 69.2
Gorai.004G103900 Gossypium raimondii HOM05D005858 ORTHO05D006982 5.4e-08 60.1 47 57.4
Hund08985 Selenicereus undatus HOM05D005858 ORTHO05D006982 5.4e-08 60.1 43 67.4
Lj9A728G21 Lonicera japonica HOM05D005858 ORTHO05D006982 7.0e-08 59.7 42 64.3
PGR142G1620 Punica granatum HOM05D005858 ORTHO05D006982 7.0e-08 59.7 48 62.5
Gohir.D08G097150 Gossypium hirsutum HOM05D005858 ORTHO05D006982 9.1e-08 59.3 42 64.3
CANSAT11G0936 Cannabis sativa HOM05D005858 ORTHO05D006982 2.0e-07 58.2 43 60.5
Hund08986 Selenicereus undatus HOM05D005858 ORTHO05D006982 2.0e-07 58.2 43 62.8
Gohir.A08G096524 Gossypium hirsutum HOM05D005858 ORTHO05D006982 3.5e-07 57.4 47 55.3
SGA_v2.0_scaffold66G22516 Striga asiatica HOM05D005858 ORTHO05D006982 3.5e-07 57.4 47 51.1
EL10Ac8g18869 Beta vulgaris HOM05D005858 ORTHO05D006982 4.5e-07 57.0 43 60.5
Sc08g0005620 Simmondsia chinensis HOM05D005858 ORTHO05D006982 4.5e-07 57.0 43 58.1
AUR62028410 Chenopodium quinoa HOM05D005858 ORTHO05D006982 7.7e-07 56.2 43 58.1
AUR62039752 Chenopodium quinoa HOM05D005858 ORTHO05D006982 7.7e-07 56.2 43 58.1
DCAR_017943 Daucus carota HOM05D005858 ORTHO05D006982 1.0e-06 55.8 40 60.0
PSO782G0888 Papaver somniferum HOM05D005858 ORTHO05D006982 1.0e-06 55.8 47 55.3
Thhalv10013683m.g Eutrema salsugineum HOM05D005858 ORTHO05D006982 1.7e-06 55.1 46 58.7
CARHR271500 Cardamine hirsuta HOM05D005858 ORTHO05D006982 2.2e-06 54.7 48 56.2
Lsat_1_v5_gn_5_87041 Lactuca sativa HOM05D005858 ORTHO05D006982 2.9e-06 54.3 47 55.3
BcaB05g22374 Brassica carinata HOM05D005858 ORTHO05D006982 3.8e-06 53.9 47 57.4
BcaB05g22372 Brassica carinata HOM05D005858 ORTHO05D006982 5.0e-06 53.5 48 58.3
BcaB08g36142 Brassica carinata HOM05D005858 ORTHO05D006982 8.5e-06 52.8 46 56.5
HanXRQChr10g0306461 Helianthus annuus HOM05D005858 ORTHO05D006982 8.5e-06 52.8 47 51.1


User provided reference genes

Program Settings