Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.08G169600 Carya illinoinensis HOM05D003567 ORTHO05D004117 1.9e-84 315.8 161 100.0
CiPaw.08G176400 Carya illinoinensis HOM05D003567 ORTHO05D004117 4.3e-81 304.7 161 96.3
CiPaw.08G171000 Carya illinoinensis HOM05D003567 ORTHO05D004117 2.7e-75 285.4 161 92.5
CiPaw.08G170300 Carya illinoinensis HOM05D003567 ORTHO05D004117 7.8e-75 283.9 154 93.5
CiPaw.08G174900 Carya illinoinensis HOM05D003567 ORTHO05D004117 3.0e-74 282.0 160 90.6
Cfa006520 Carpinus fangiana HOM05D003567 ORTHO05D004117 4.7e-72 274.6 154 89.0
GSVIVG01022011001 Vitis vinifera HOM05D003567 ORTHO05D004117 3.1e-71 271.9 154 87.0
Prupe.6G333000 Prunus persica HOM05D003567 ORTHO05D004117 2.6e-70 268.9 154 86.4
Manes.08G124900 Manihot esculenta HOM05D003567 ORTHO05D004117 3.4e-70 268.5 154 85.7
Thecc.05G296900 Theobroma cacao HOM05D003567 ORTHO05D004117 5.8e-70 267.7 154 85.1
COL.COLO4_13563 Corchorus olitorius HOM05D003567 ORTHO05D004117 1.7e-69 266.2 154 85.1
Duzib177G1144 Durio zibethinus HOM05D003567 ORTHO05D004117 1.7e-69 266.2 154 83.8
Gohir.A11G260300 Gossypium hirsutum HOM05D003567 ORTHO05D004117 2.2e-69 265.8 154 83.8
Dinv22925 Davidia involucrata HOM05D003567 ORTHO05D004117 4.9e-69 264.6 154 85.1
CiPaw.08G169100 Carya illinoinensis HOM05D003567 ORTHO05D004117 8.4e-69 263.8 168 83.9
MD04G1212700 Malus domestica HOM05D003567 ORTHO05D004117 8.4e-69 263.8 154 83.8
Ciclev10001775m.g Citrus clementina HOM05D003567 ORTHO05D004117 2.4e-68 262.3 154 83.1
Atru.chr2.536 Acer truncatum HOM05D003567 ORTHO05D004117 3.2e-68 261.9 154 82.5
Gohir.D11G270600 Gossypium hirsutum HOM05D003567 ORTHO05D004117 3.2e-68 261.9 154 82.5
Gorai.007G291100 Gossypium raimondii HOM05D003567 ORTHO05D004117 3.2e-68 261.9 154 82.5
QL03p003527 Quercus lobata HOM05D003567 ORTHO05D004117 9.2e-68 260.4 151 86.1
Sopen02g034720 Solanum pennellii HOM05D003567 ORTHO05D004117 2.1e-67 259.2 154 82.5
CAN.G836.16 Capsicum annuum HOM05D003567 ORTHO05D004117 2.7e-67 258.8 154 82.5
Oeu025239.1 Olea europaea HOM05D003567 ORTHO05D004117 2.7e-67 258.8 154 82.5
QL03p002916 Quercus lobata HOM05D003567 ORTHO05D004117 3.5e-67 258.5 151 84.8
Haze_04266 Corylus avellana HOM05D003567 ORTHO05D004117 6.0e-67 257.7 192 72.4
Eucgr.H04431 Eucalyptus grandis HOM05D003567 ORTHO05D004117 6.0e-67 257.7 154 80.5
PGSC0003DMG400010083 Solanum tuberosum HOM05D003567 ORTHO05D004117 7.8e-67 257.3 154 81.8
CANSAT54G0395 Cannabis sativa HOM05D003567 ORTHO05D004117 1.3e-66 256.5 154 80.5
CSS0000473 Camellia sinensis var. sinensis HOM05D003567 ORTHO05D004117 1.7e-66 256.1 154 81.2
CSS0010999 Camellia sinensis var. sinensis HOM05D003567 ORTHO05D004117 1.7e-66 256.1 154 81.2
SGA_v2.0_scaffold21G09407 Striga asiatica HOM05D003567 ORTHO05D004117 3.0e-66 255.4 157 80.3
Rhsim05G0146400 Rhododendron simsii HOM05D003567 ORTHO05D004117 3.9e-66 255.0 154 79.2
Potri.013G029000 Populus trichocarpa HOM05D003567 ORTHO05D004117 5.1e-66 254.6 154 79.2
Cpa.g.sc84.115 Carica papaya HOM05D003567 ORTHO05D004117 6.6e-66 254.2 154 82.5
Sabra13G0029300 Salix brachista HOM05D003567 ORTHO05D004117 6.6e-66 254.2 154 79.2
CiPaw.08G171500 Carya illinoinensis HOM05D003567 ORTHO05D004117 8.6e-66 253.8 153 88.2
Medtr7g114070 Medicago truncatula HOM05D003567 ORTHO05D004117 1.9e-65 252.7 154 79.9
VMungo0540G1876 Vigna mungo HOM05D003567 ORTHO05D004117 1.9e-65 252.7 154 78.6
Cc02_g32800 Coffea canephora HOM05D003567 ORTHO05D004117 2.5e-65 252.3 154 80.5
RcHm_v2.0_Chr3g0453431 Rosa chinensis HOM05D003567 ORTHO05D004117 3.3e-65 251.9 153 79.7
Nitab4.5_0008257g0040 Nicotiana tabacum HOM05D003567 ORTHO05D004117 4.3e-65 251.5 154 81.2
Sc06g0003450 Simmondsia chinensis HOM05D003567 ORTHO05D004117 4.3e-65 251.5 154 79.2
Psat3g009280 Pisum sativum HOM05D003567 ORTHO05D004117 5.6e-65 251.1 154 79.2
Lj9A677T42 Lonicera japonica HOM05D003567 ORTHO05D004117 7.3e-65 250.8 153 80.4
Lj1g0016651 Lotus japonicus HOM05D003567 ORTHO05D004117 9.6e-65 250.4 154 77.9
Glyma.03G241900 Glycine max HOM05D003567 ORTHO05D004117 1.2e-64 250.0 154 77.9
Nitab4.5_0000327g0090 Nicotiana tabacum HOM05D003567 ORTHO05D004117 1.2e-64 250.0 154 80.5
FvH4_6g04940 Fragaria vesca HOM05D003567 ORTHO05D004117 3.6e-64 248.4 154 77.9
Ca_09384_v3 Cicer arietinum L. HOM05D003567 ORTHO05D004117 6.2e-64 247.7 154 78.6
FAN14G3462 Fragaria x ananassa HOM05D003567 ORTHO05D004117 6.2e-64 247.7 152 78.9
PGR031G0264 Punica granatum HOM05D003567 ORTHO05D004117 8.1e-64 247.3 154 76.0
Hund07025 Selenicereus undatus HOM05D003567 ORTHO05D004117 8.1e-64 247.3 163 76.7
A09p05230 Brassica napus HOM05D003567 ORTHO05D004117 1.8e-63 246.1 154 77.3
C09p05690 Brassica napus HOM05D003567 ORTHO05D004117 2.4e-63 245.7 154 77.3
BolC9t53498H Brassica oleracea HOM05D003567 ORTHO05D004117 2.4e-63 245.7 154 77.3
BraA09t36162Z Brassica rapa HOM05D003567 ORTHO05D004117 2.4e-63 245.7 154 77.3
Migut.L01512 Erythranthe guttata HOM05D003567 ORTHO05D004117 3.1e-63 245.4 154 76.6
BcaB04g19664 Brassica carinata HOM05D003567 ORTHO05D004117 5.2e-63 244.6 154 76.6
BcaC04g23684 Brassica carinata HOM05D003567 ORTHO05D004117 5.2e-63 244.6 154 76.6
AUR62005073 Chenopodium quinoa HOM05D003567 ORTHO05D004117 5.2e-63 244.6 154 77.3
Phvul.006G095900 Phaseolus vulgaris HOM05D003567 ORTHO05D004117 5.2e-63 244.6 154 78.6
Aqoxy2G03161 Aquilegia oxysepala HOM05D003567 ORTHO05D004117 1.5e-62 243.0 154 74.7
BcaB04g19661 Brassica carinata HOM05D003567 ORTHO05D004117 1.5e-62 243.0 154 76.0
BcaC04g23687 Brassica carinata HOM05D003567 ORTHO05D004117 1.5e-62 243.0 154 76.0
CARHR185910 Cardamine hirsuta HOM05D003567 ORTHO05D004117 4.4e-62 241.5 154 74.7
EL10Ac4g09285 Beta vulgaris HOM05D003567 ORTHO05D004117 7.6e-62 240.7 161 75.8
ClCG03G016590 Citrullus lanatus HOM05D003567 ORTHO05D004117 7.6e-62 240.7 153 75.8
SalBow1G3301 Salvia bowleyana HOM05D003567 ORTHO05D004117 7.6e-62 240.7 154 76.0
Lalb_Chr18g0045341 Lupinus albus HOM05D003567 ORTHO05D004117 9.9e-62 240.4 154 74.0
TPR.G21793 Trifolium pratense HOM05D003567 ORTHO05D004117 9.9e-62 240.4 154 76.6
arahy.Tifrunner.gnm1.ann1.86SZEE Arachis hypogaea HOM05D003567 ORTHO05D004117 1.3e-61 240.0 154 76.0
CsaV3_1G039400 Cucumis sativus L. HOM05D003567 ORTHO05D004117 1.3e-61 240.0 154 74.0
DCAR_016974 Daucus carota HOM05D003567 ORTHO05D004117 1.7e-61 239.6 153 77.1
THA.LOC104802813 Tarenaya hassleriana HOM05D003567 ORTHO05D004117 1.7e-61 239.6 154 74.0
arahy.Tifrunner.gnm1.ann1.BBX3WJ Arachis hypogaea HOM05D003567 ORTHO05D004117 2.9e-61 238.8 154 75.3
Sp2g20530 Schrenkiella parvula HOM05D003567 ORTHO05D004117 2.9e-61 238.8 154 74.0
MELO3C015365.2 Cucumis melo HOM05D003567 ORTHO05D004117 3.8e-61 238.4 153 73.9
Nn3g21224 Nelumbo nucifera HOM05D003567 ORTHO05D004117 3.8e-61 238.4 154 76.0
AL6G39790 Arabidopsis lyrata HOM05D003567 ORTHO05D004117 4.9e-61 238.0 154 74.0
Sed0017789 Sechium edule HOM05D003567 ORTHO05D004117 8.4e-61 237.3 154 75.3
unitig_578.g16416 Utricularia gibba HOM05D003567 ORTHO05D004117 1.1e-60 236.9 154 76.0
AT5G27290 Arabidopsis thaliana HOM05D003567 ORTHO05D004117 2.4e-60 235.7 154 72.7
Carub.0006s2522 Capsella rubella HOM05D003567 ORTHO05D004117 3.2e-60 235.3 154 71.4
Thhalv10004533m.g Eutrema salsugineum HOM05D003567 ORTHO05D004117 3.2e-60 235.3 154 74.0
Lsat_1_v5_gn_5_38921 Lactuca sativa HOM05D003567 ORTHO05D004117 9.3e-60 233.8 153 73.9
PSO170G0105 Papaver somniferum HOM05D003567 ORTHO05D004117 1.2e-59 233.4 153 75.8
HanXRQChr16g0512311 Helianthus annuus HOM05D003567 ORTHO05D004117 3.5e-59 231.9 154 72.1
CDE05G1895 Ceratophyllum demersum HOM05D003567 ORTHO05D004117 7.8e-59 230.7 154 70.8
PSO302G0281 Papaver somniferum HOM05D003567 ORTHO05D004117 1.3e-58 229.9 151 76.2
Aa31LG11G9050 Aethionema arabicum HOM05D003567 ORTHO05D004117 1.7e-58 229.6 154 69.5
ECA246G1301 Erigeron canadensis HOM05D003567 ORTHO05D004117 4.3e-57 224.9 154 70.8
CiPaw.08G174300 Carya illinoinensis HOM05D003567 ORTHO05D004117 1.6e-56 223.0 155 78.7
PSO170G3637 Papaver somniferum HOM05D003567 ORTHO05D004117 5.3e-55 218.0 153 71.2
Os01g0382700 Oryza sativa ssp. japonica HOM05D003567 ORTHO05D004117 6.9e-55 217.6 154 69.5
PSO302G0180 Papaver somniferum HOM05D003567 ORTHO05D004117 9.9e-54 213.8 153 69.9
ATR0487G007 Amborella trichopoda HOM05D003567 ORTHO05D004117 2.3e-50 202.6 153 64.1
TAR362G0113 Trochodendron aralioides HOM05D003567 ORTHO05D004117 3.7e-48 195.3 154 67.5
Glyma.19G239300 Glycine max HOM05D003567 ORTHO05D004117 1.1e-47 193.7 120 75.8
vmacro19654 Vaccinium macrocarpon HOM05D003567 ORTHO05D004117 2.4e-47 192.6 184 59.2
SEGI_02572 Sequoiadendron giganteum HOM05D003567 ORTHO05D004117 3.1e-47 192.2 153 62.1
SMO367G0890 Selaginella moellendorffii HOM05D003567 ORTHO05D004117 5.3e-47 191.4 154 62.3
AUR62000902 Chenopodium quinoa HOM05D003567 ORTHO05D004117 1.3e-45 186.8 153 64.7
AUR62043825 Chenopodium quinoa HOM05D003567 ORTHO05D004117 4.9e-45 184.9 155 64.5
AUR62025002 Chenopodium quinoa HOM05D003567 ORTHO05D004117 6.4e-45 184.5 152 64.5
AUR62030520 Chenopodium quinoa HOM05D003567 ORTHO05D004117 6.4e-45 184.5 152 64.5
AUR62032573 Chenopodium quinoa HOM05D003567 ORTHO05D004117 6.4e-45 184.5 152 64.5
AUR62037588 Chenopodium quinoa HOM05D003567 ORTHO05D004117 6.4e-45 184.5 152 64.5
Mapoly0059s0075 Marchantia polymorpha HOM05D003567 ORTHO05D004117 7.9e-43 177.6 152 58.6
AagrBONN_evm.TU.Sc2ySwM_344.4623 Anthoceros agrestis HOM05D003567 ORTHO05D004117 1.0e-42 177.2 154 57.8
AUR62033882 Chenopodium quinoa HOM05D003567 ORTHO05D004117 4.8e-40 168.3 154 61.0
Actinidia19813 Actinidia chinensis HOM05D003567 ORTHO05D004117 3.8e-37 158.7 89 85.4
Cfa016693 Carpinus fangiana HOM05D000079 ORTHO05D000211 5.5e-36 154.8 90 90.0
CBR_g53664 Chara braunii HOM05D003567 ORTHO05D004117 2.3e-34 149.4 154 50.0
Peaxi162Scf00338g00312 Petunia axillaris HOM05D003567 ORTHO05D004117 1.9e-33 146.4 154 55.2
MBI10_g37183_MAGBIO Magnolia biondii HOM05D003567 ORTHO05D004117 1.3e-32 143.7 102 68.6
MBI10_g29587_MAGBIO Magnolia biondii HOM05D003567 ORTHO05D004117 4.8e-32 141.7 114 64.9
Ah.01g016620 Amaranthus hybridus HOM05D003567 ORTHO05D004117 2.0e-30 136.3 78 80.8
Zm00001eb131930 Zea mays HOM05D003567 ORTHO05D004117 1.9e-28 129.8 88 70.5
TWI56G1348 Tripterygium wilfordii HOM05D003567 ORTHO05D004117 7.2e-28 127.9 169 47.9
PRCOL_00003025 Prasinoderma coloniale HOM05D003567 ORTHO05D004117 2.1e-27 126.3 152 43.4
MCO11G582 Micromonas commoda HOM05D003567 ORTHO05D004117 2.7e-27 125.9 155 49.0
Actinidia28391 Actinidia chinensis HOM05D003567 ORTHO05D004117 5.1e-26 121.7 76 80.3
Solyc02g090020.4 Solanum lycopersicum HOM05D003567 ORTHO05D004117 1.8e-23 113.2 76 75.0
MSTRG.10545 Avicennia marina HOM05D003567 ORTHO05D004117 6.9e-23 111.3 73 74.0
AUR62026190 Chenopodium quinoa HOM05D003567 ORTHO05D004117 2.5e-20 102.8 72 72.2
CBR_g22370 Chara braunii HOM05D003567 ORTHO05D004117 7.9e-19 97.8 90 52.2
TAR365G0081 Trochodendron aralioides HOM05D003567 ORTHO05D004117 1.0e-18 97.4 154 39.6
Aqoxy2G03162 Aquilegia oxysepala HOM05D003567 ORTHO05D004117 1.5e-17 93.6 154 39.0
Oeu033946.2 Olea europaea HOM05D003567 ORTHO05D004117 1.2e-14 84.0 155 38.7
Dinv40231 Davidia involucrata HOM05D003567 ORTHO05D004117 5.9e-14 81.6 153 39.2
Nn3g21221 Nelumbo nucifera HOM05D003567 ORTHO05D004117 7.7e-14 81.3 155 36.1
PSO170G0922 Papaver somniferum HOM05D003567 ORTHO05D004117 1.3e-13 80.5 153 36.6
Pp3c5_10750 Physcomitrium patens HOM05D003567 ORTHO05D004117 2.2e-13 79.7 153 35.3
Actinidia30900 Actinidia chinensis HOM05D003567 ORTHO05D004117 9.4e-12 74.3 159 30.8
vmacro05046 Vaccinium macrocarpon HOM05D003567 ORTHO05D004117 1.4e-10 70.5 163 32.5
ECA246G0369 Erigeron canadensis HOM05D003567 ORTHO05D004117 3.9e-10 68.9 156 34.6
Rhsim07G0178200 Rhododendron simsii HOM05D003567 ORTHO05D004117 5.2e-10 68.6 155 31.0
MELO3C029314.2 Cucumis melo HOM05D003567 ORTHO05D004117 8.8e-10 67.8 153 30.7
Lsat_1_v5_gn_5_39020 Lactuca sativa HOM05D003567 ORTHO05D004117 4.4e-09 65.5 155 33.5
Eucgr.H04432 Eucalyptus grandis HOM05D003567 ORTHO05D004117 1.3e-08 63.9 156 33.3
Duzib106G0722 Durio zibethinus HOM05D003567 ORTHO05D004117 4.8e-08 62.0 128 33.6
arahy.Tifrunner.gnm1.ann1.HSFD6Z Arachis hypogaea HOM05D003567 ORTHO05D004117 1.1e-07 60.8 40 70.0
CsaV3_1G039390 Cucumis sativus L. HOM05D003567 ORTHO05D004117 1.4e-07 60.5 153 28.8
Thhalv10023619m.g Eutrema salsugineum HOM05D003567 ORTHO05D004117 1.4e-07 60.5 53 52.8
PSO302G0249 Papaver somniferum HOM05D003567 ORTHO05D004117 1.8e-07 60.1 153 31.4
BcaC09g49610 Brassica carinata HOM05D003567 ORTHO05D004117 3.1e-07 59.3 53 49.1
C01p34500 Brassica napus HOM05D003567 ORTHO05D004117 3.1e-07 59.3 53 49.1
BolC1t03421H Brassica oleracea HOM05D003567 ORTHO05D004117 3.1e-07 59.3 53 49.1
Carub.0002s0892 Capsella rubella HOM05D003567 ORTHO05D004117 3.1e-07 59.3 53 52.8
SpUn0002_0170 Schrenkiella parvula HOM05D003567 ORTHO05D004117 3.1e-07 59.3 85 37.6
AT1G54680 Arabidopsis thaliana HOM05D003567 ORTHO05D004117 7.0e-07 58.2 53 49.1
Cc02_g32780 Coffea canephora HOM05D003567 ORTHO05D004117 1.2e-06 57.4 54 51.9
Aa31LG2G12110 Aethionema arabicum HOM05D003567 ORTHO05D004117 1.6e-06 57.0 55 49.1
AL1G65120 Arabidopsis lyrata HOM05D003567 ORTHO05D004117 1.6e-06 57.0 53 49.1
AL7G51030 Arabidopsis lyrata HOM05D003567 ORTHO05D004117 1.6e-06 57.0 53 49.1
A01p27100 Brassica napus HOM05D003567 ORTHO05D004117 1.6e-06 57.0 53 49.1
BraA01t02844Z Brassica rapa HOM05D003567 ORTHO05D004117 1.6e-06 57.0 53 49.1
HanXRQChr12g0379821 Helianthus annuus HOM05D003567 ORTHO05D004117 1.6e-06 57.0 56 46.4
Migut.L01511 Erythranthe guttata HOM05D003567 ORTHO05D004117 2.0e-06 56.6 157 31.2
THA.LOC104805845 Tarenaya hassleriana HOM05D003567 ORTHO05D004117 2.0e-06 56.6 55 49.1
BcaC05g25942 Brassica carinata HOM05D003567 ORTHO05D004117 2.6e-06 56.2 53 47.2
GSVIVG01022012001 Vitis vinifera HOM05D003567 ORTHO05D004117 2.6e-06 56.2 63 44.4
BcaB04g20139 Brassica carinata HOM05D003567 ORTHO05D004117 3.5e-06 55.8 53 47.2
PGR031G3379 Punica granatum HOM05D003567 ORTHO05D004117 3.5e-06 55.8 157 28.0
Sed0008957 Sechium edule HOM05D003567 ORTHO05D004117 3.5e-06 55.8 157 29.3
CARHR055820 Cardamine hirsuta HOM05D003567 ORTHO05D004117 4.5e-06 55.5 53 47.2
Lj9A677G34 Lonicera japonica HOM05D003567 ORTHO05D004117 4.5e-06 55.5 51 51.0
Cpa.g.sc84.116 Carica papaya HOM05D003567 ORTHO05D004117 7.7e-06 54.7 50 50.0


User provided reference genes

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