Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.08G168100 Carya illinoinensis HOM05D004923 ORTHO05D005940 1.1e-141 507.7 520 100.0
QL03p002854 Quercus lobata HOM05D004923 ORTHO05D005940 2.3e-91 340.5 256 70.7
Cfa006523 Carpinus fangiana HOM05D004923 ORTHO05D005940 6.6e-91 339.0 260 71.9
Haze_04263 Corylus avellana HOM05D004923 ORTHO05D005940 1.1e-85 321.6 260 69.6
CiPaw.07G012700 Carya illinoinensis HOM05D004923 ORTHO05D005940 1.4e-85 321.2 233 74.7
QL03p003582 Quercus lobata HOM05D004923 ORTHO05D005940 1.2e-76 291.6 255 63.5
Ciclev10000602m.g Citrus clementina HOM05D004923 ORTHO05D005940 3.2e-61 240.4 260 51.9
Manes.09G161700 Manihot esculenta HOM05D004923 ORTHO05D005940 4.6e-60 236.5 259 49.8
arahy.Tifrunner.gnm1.ann1.96LETV Arachis hypogaea HOM05D004923 ORTHO05D005940 3.9e-59 233.4 261 49.4
TWI56G0946 Tripterygium wilfordii HOM05D004923 ORTHO05D005940 5.6e-58 229.6 260 51.5
TAR362G1085 Trochodendron aralioides HOM05D004923 ORTHO05D005940 1.9e-53 214.5 259 46.7
Sabra05G0039600 Salix brachista HOM05D004923 ORTHO05D005940 2.3e-51 207.6 261 46.7
Hma1.2p1_0702F.1_g206060 Hydrangea macrophylla HOM05D004923 ORTHO05D005940 5.7e-50 203.0 261 46.0
Atru.chr2.532 Acer truncatum HOM05D004923 ORTHO05D005940 2.8e-49 200.7 314 41.4
Gohir.A08G212800 Gossypium hirsutum HOM05D004923 ORTHO05D005940 3.1e-48 197.2 245 45.3
Glyma.10G157900 Glycine max HOM05D004923 ORTHO05D005940 4.1e-48 196.8 260 48.1
Potri.013G028600 Populus trichocarpa HOM05D004923 ORTHO05D005940 4.1e-48 196.8 246 47.2
Thecc.05G297900 Theobroma cacao HOM05D004923 ORTHO05D005940 4.1e-48 196.8 208 52.4
arahy.Tifrunner.gnm1.ann1.S9CKM7 Arachis hypogaea HOM05D004923 ORTHO05D005940 5.9e-47 193.0 262 46.6
Cpa.g.sc84.119 Carica papaya HOM05D004923 ORTHO05D005940 1.0e-46 192.2 259 45.6
Sabra13G0028900 Salix brachista HOM05D004923 ORTHO05D005940 3.8e-46 190.3 252 47.2
Prupe.6G332700 Prunus persica HOM05D004923 ORTHO05D005940 5.0e-46 189.9 194 56.7
Lj9P678T27 Lonicera japonica HOM05D004923 ORTHO05D005940 1.4e-45 188.3 259 44.4
Duzib177G0588 Durio zibethinus HOM05D004923 ORTHO05D005940 4.2e-45 186.8 210 48.6
Gohir.A11G260600 Gossypium hirsutum HOM05D004923 ORTHO05D005940 5.5e-45 186.4 259 43.2
CSS0000935 Camellia sinensis var. sinensis HOM05D004923 ORTHO05D005940 7.2e-45 186.0 234 46.2
Lalb_Chr02g0148481 Lupinus albus HOM05D004923 ORTHO05D005940 2.7e-44 184.1 260 45.4
Hma1.2p1_2453F.1_g322410 Hydrangea macrophylla HOM05D004923 ORTHO05D005940 7.9e-44 182.6 261 43.3
CANSAT54G1324 Cannabis sativa HOM05D004923 ORTHO05D005940 6.7e-43 179.5 202 52.0
GSVIVG01022015001 Vitis vinifera HOM05D004923 ORTHO05D005940 1.9e-42 177.9 260 43.5
Glyma.20G230700 Glycine max HOM05D004923 ORTHO05D005940 4.3e-42 176.8 222 49.1
Potri.005G040500 Populus trichocarpa HOM05D004923 ORTHO05D005940 1.3e-41 175.3 261 42.9
Gohir.D11G270900 Gossypium hirsutum HOM05D004923 ORTHO05D005940 1.6e-41 174.9 236 43.2
Gorai.007G291400 Gossypium raimondii HOM05D004923 ORTHO05D005940 1.6e-41 174.9 236 43.2
Sopen01g053000 Solanum pennellii HOM05D004923 ORTHO05D005940 1.6e-41 174.9 261 41.4
Gohir.D08G229800 Gossypium hirsutum HOM05D004923 ORTHO05D005940 2.4e-40 171.0 209 46.4
Gorai.004G244000 Gossypium raimondii HOM05D004923 ORTHO05D005940 2.4e-40 171.0 209 46.4
arahy.Tifrunner.gnm1.ann1.VPW6I2 Arachis hypogaea HOM05D004923 ORTHO05D005940 4.1e-40 170.2 262 44.7
COL.COLO4_13559 Corchorus olitorius HOM05D004923 ORTHO05D005940 4.1e-40 170.2 206 47.1
Solyc01g110960.4 Solanum lycopersicum HOM05D004923 ORTHO05D005940 1.2e-39 168.7 261 40.2
Actinidia19810 Actinidia chinensis HOM05D004923 ORTHO05D005940 1.5e-39 168.3 232 46.1
Eucgr.B02029 Eucalyptus grandis HOM05D004923 ORTHO05D005940 5.9e-39 166.4 259 40.2
RcHm_v2.0_Chr3g0453461 Rosa chinensis HOM05D004923 ORTHO05D005940 5.9e-39 166.4 171 55.0
Phvul.007G183300 Phaseolus vulgaris HOM05D004923 ORTHO05D005940 1.4e-37 161.8 228 43.9
THA.LOC104818671 Tarenaya hassleriana HOM05D004923 ORTHO05D005940 1.4e-37 161.8 260 40.0
Manes.08G124600 Manihot esculenta HOM05D004923 ORTHO05D005940 3.6e-36 157.1 252 40.1
Lj5g0013750 Lotus japonicus HOM05D004923 ORTHO05D005940 4.6e-36 156.8 297 38.4
FAN14G0846 Fragaria x ananassa HOM05D004923 ORTHO05D005940 6.1e-36 156.4 163 53.4
FvH4_6g04961 Fragaria vesca HOM05D004923 ORTHO05D005940 1.8e-35 154.8 163 53.4
MBI18_g16961_MAGBIO Magnolia biondii HOM05D004923 ORTHO05D005940 3.0e-35 154.1 226 40.3
Nn4g26097 Nelumbo nucifera HOM05D004923 ORTHO05D005940 3.9e-35 153.7 260 38.1
Dinv40234 Davidia involucrata HOM05D004923 ORTHO05D005940 2.6e-34 151.0 231 42.0
FAN02G0211 Fragaria x ananassa HOM05D004923 ORTHO05D005940 3.3e-34 150.6 163 52.1
Oeu020434.1 Olea europaea HOM05D004923 ORTHO05D005940 4.4e-34 150.2 231 39.8
FAN05G2617 Fragaria x ananassa HOM05D004923 ORTHO05D005940 5.7e-34 149.8 163 52.1
FAN09G1938 Fragaria x ananassa HOM05D004923 ORTHO05D005940 1.3e-33 148.7 163 51.5
AT5G27330 Arabidopsis thaliana HOM05D004923 ORTHO05D005940 1.7e-33 148.3 256 37.9
Sed0008414 Sechium edule HOM05D004923 ORTHO05D005940 3.7e-33 147.1 257 37.0
Sc06g0003440 Simmondsia chinensis HOM05D004923 ORTHO05D005940 3.7e-33 147.1 262 38.2
ClCG02G016160 Citrullus lanatus HOM05D004923 ORTHO05D005940 8.2e-33 146.0 260 35.4
BraA05t23008Z Brassica rapa HOM05D004923 ORTHO05D005940 1.8e-32 144.8 259 37.5
Oeu019603.1 Olea europaea HOM05D004923 ORTHO05D005940 2.4e-32 144.4 239 37.7
Cc02_g32730 Coffea canephora HOM05D004923 ORTHO05D005940 5.3e-32 143.3 259 37.8
FAN05G5260 Fragaria x ananassa HOM05D004923 ORTHO05D005940 6.9e-32 142.9 169 49.7
Sp2g20550 Schrenkiella parvula HOM05D004923 ORTHO05D005940 6.9e-32 142.9 256 37.9
Rhsim05G0146200 Rhododendron simsii HOM05D004923 ORTHO05D005940 1.2e-31 142.1 233 43.8
MSTRG.12109 Avicennia marina HOM05D004923 ORTHO05D005940 2.6e-31 141.0 261 38.3
BcaNung04359 Brassica carinata HOM05D004923 ORTHO05D005940 1.0e-30 139.0 247 36.8
AL6G39740 Arabidopsis lyrata HOM05D004923 ORTHO05D005940 5.0e-30 136.7 249 36.9
C07p40590 Brassica napus HOM05D004923 ORTHO05D005940 8.5e-30 136.0 247 38.1
Nn4g26098 Nelumbo nucifera HOM05D004923 ORTHO05D005940 3.2e-29 134.0 260 36.5
A06p37630 Brassica napus HOM05D004923 ORTHO05D005940 7.2e-29 132.9 247 37.2
Thhalv10003823m.g Eutrema salsugineum HOM05D004923 ORTHO05D005940 7.2e-29 132.9 248 36.7
VMungo0720G2495 Vigna mungo HOM05D004923 ORTHO05D005940 7.2e-29 132.9 259 35.9
MELO3C004316.2 Cucumis melo HOM05D004923 ORTHO05D005940 9.4e-29 132.5 261 34.5
SGA_v2.0_scaffold104G30165 Striga asiatica HOM05D004923 ORTHO05D005940 2.1e-28 131.3 256 34.0
CARHR079450 Cardamine hirsuta HOM05D004923 ORTHO05D005940 1.0e-27 129.0 249 33.7
Psat6g148400 Pisum sativum HOM05D004923 ORTHO05D005940 1.4e-27 128.6 162 47.5
Ca_10079_v3 Cicer arietinum L. HOM05D004923 ORTHO05D005940 3.0e-27 127.5 311 33.4
C05p62100 Brassica napus HOM05D004923 ORTHO05D005940 3.9e-27 127.1 206 39.3
BolC5t34868H Brassica oleracea HOM05D004923 ORTHO05D005940 3.9e-27 127.1 206 39.3
CARHR185930 Cardamine hirsuta HOM05D004923 ORTHO05D005940 3.9e-27 127.1 256 35.2
BcaNung02477 Brassica carinata HOM05D004923 ORTHO05D005940 6.7e-27 126.3 247 36.4
Medtr1g082215 Medicago truncatula HOM05D004923 ORTHO05D005940 2.0e-26 124.8 304 32.6
A05p42440 Brassica napus HOM05D004923 ORTHO05D005940 3.3e-26 124.0 233 36.1
AUR62000899 Chenopodium quinoa HOM05D004923 ORTHO05D005940 5.7e-26 123.2 274 32.5
QL01p001837 Quercus lobata HOM05D004923 ORTHO05D005940 5.7e-26 123.2 100 64.0
DCAR_029454 Daucus carota HOM05D004923 ORTHO05D005940 4.8e-25 120.2 231 37.7
PGR083G0910 Punica granatum HOM05D004923 ORTHO05D005940 1.4e-24 118.6 259 36.3
TPR.G2744 Trifolium pratense HOM05D004923 ORTHO05D005940 1.4e-24 118.6 170 42.9
AL3G15510 Arabidopsis lyrata HOM05D004923 ORTHO05D005940 1.8e-24 118.2 244 32.0
BraA06t26683Z Brassica rapa HOM05D004923 ORTHO05D005940 1.8e-24 118.2 140 48.6
HanXRQChr15g0493471 Helianthus annuus HOM05D004923 ORTHO05D005940 4.1e-24 117.1 261 36.4
THA.LOC104821702 Tarenaya hassleriana HOM05D004923 ORTHO05D005940 9.1e-24 115.9 257 32.7
Sp3g03950 Schrenkiella parvula HOM05D004923 ORTHO05D005940 1.2e-23 115.5 241 34.0
Aqoxy2G03170 Aquilegia oxysepala HOM05D004923 ORTHO05D005940 1.6e-23 115.2 256 32.8
BolC7t44596H Brassica oleracea HOM05D004923 ORTHO05D005940 2.0e-23 114.8 131 48.1
Carub.0003s0437 Capsella rubella HOM05D004923 ORTHO05D005940 3.5e-23 114.0 233 33.0
ECA246G1289 Erigeron canadensis HOM05D004923 ORTHO05D005940 1.3e-22 112.1 259 32.4
PGSC0003DMG400001646 Solanum tuberosum HOM05D004923 ORTHO05D005940 3.8e-22 110.5 142 45.1
AUR62005075 Chenopodium quinoa HOM05D004923 ORTHO05D005940 6.5e-22 109.8 269 31.2
AT3G05130 Arabidopsis thaliana HOM05D004923 ORTHO05D005940 8.5e-22 109.4 227 31.7
Nitab4.5_0000003g0420 Nicotiana tabacum HOM05D004923 ORTHO05D005940 3.2e-21 107.5 134 45.5
PSO302G0039 Papaver somniferum HOM05D004923 ORTHO05D005940 4.2e-21 107.1 136 44.9
PSO170G6876 Papaver somniferum HOM05D004923 ORTHO05D005940 5.5e-21 106.7 290 31.0
Nitab4.5_0008768g0010 Nicotiana tabacum HOM05D004923 ORTHO05D005940 4.7e-20 103.6 139 43.9
Migut.A01112 Erythranthe guttata HOM05D004923 ORTHO05D005940 6.1e-20 103.2 115 53.9
PSO151G0007 Papaver somniferum HOM05D004923 ORTHO05D005940 1.0e-19 102.4 263 32.7
PSO151G0141 Papaver somniferum HOM05D004923 ORTHO05D005940 1.0e-19 102.4 263 32.7
PSO151G0084 Papaver somniferum HOM05D004923 ORTHO05D005940 1.4e-19 102.1 260 31.5
ECA233G0604 Erigeron canadensis HOM05D004923 ORTHO05D005940 2.6e-18 97.8 219 35.6
MD12G1227100 Malus domestica HOM05D004923 ORTHO05D005940 1.8e-16 91.7 110 50.9
HanXRQChr05g0158391 Helianthus annuus HOM05D004923 ORTHO05D005940 7.0e-16 89.7 116 46.6
Aa31LG11G9060 Aethionema arabicum HOM05D004923 ORTHO05D005940 9.1e-16 89.4 202 34.2
Ah.04g159880 Amaranthus hybridus HOM05D004923 ORTHO05D005940 1.3e-14 85.5 268 28.0
Carub.0006s2521 Capsella rubella HOM05D004923 ORTHO05D005940 1.3e-14 85.5 243 30.5
MD04G1212300 Malus domestica HOM05D004923 ORTHO05D005940 1.7e-14 85.1 260 31.2
CAN.G1329.24 Capsicum annuum HOM05D004923 ORTHO05D005940 2.2e-14 84.7 112 44.6
BcaC05g29999 Brassica carinata HOM05D004923 ORTHO05D005940 5.0e-14 83.6 112 42.9
CsaV3_2G004820 Cucumis sativus L. HOM05D004923 ORTHO05D005940 8.5e-14 82.8 260 28.8
SalBow6G2889 Salvia bowleyana HOM05D004923 ORTHO05D005940 1.1e-13 82.4 258 30.6
Peaxi162Scf00016g10236 Petunia axillaris HOM05D004923 ORTHO05D005940 1.5e-13 82.0 113 43.4
Ah.04g159900 Amaranthus hybridus HOM05D004923 ORTHO05D005940 4.2e-13 80.5 268 27.2
Lsat_1_v5_gn_4_137721 Lactuca sativa HOM05D004923 ORTHO05D005940 6.1e-12 76.6 259 28.6
CDE09G0746 Ceratophyllum demersum HOM05D056443 ORTHO05D005940 3.0e-11 74.3 262 25.6
AL3G15330 Arabidopsis lyrata HOM05D004923 ORTHO05D005940 6.8e-11 73.2 228 25.9
unitig_8.g3020 Utricularia gibba HOM05D004923 ORTHO05D005940 6.8e-11 73.2 245 25.7
Lsat_1_v5_gn_5_38100 Lactuca sativa HOM05D004923 ORTHO05D005940 2.0e-10 71.6 257 27.6
SHI18226 Sapria himalayana HOM05D004923 ORTHO05D005940 1.7e-09 68.6 251 28.7
CDE02G2189 Ceratophyllum demersum HOM05D056443 ORTHO05D005940 2.4e-08 64.7 137 29.9
BcaC01g00704 Brassica carinata HOM05D004923 ORTHO05D032366 7.7e-07 59.7 233 26.2
BolC3t20618H Brassica oleracea HOM05D004923 ORTHO05D032366 7.7e-07 59.7 233 26.2
HPP92_017194 Vanilla planifolia HOM05D041139 ORTHO05D037827 1.7e-06 58.5 192 29.7
Lj5g0000463 Lotus japonicus HOM05D000160 ORTHO05D000914 2.9e-06 57.8 82 42.7
HPP92_027338 Vanilla planifolia HOM05D041139 ORTHO05D037827 3.8e-06 57.4 178 30.9
Lalb_Chr18g0045421 Lupinus albus HOM05D004923 ORTHO05D005940 5.0e-06 57.0 278 28.4


User provided reference genes

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