Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.08G164900 Carya illinoinensis HOM05D004847 ORTHO05D005856 1.9e-185 652.5 374 100.0
QL03p006978 Quercus lobata HOM05D004847 ORTHO05D005856 1.6e-147 526.6 376 79.8
CiPaw.07G017600 Carya illinoinensis HOM05D004847 ORTHO05D005856 3.5e-134 482.3 347 80.4
Thecc.05G303800 Theobroma cacao HOM05D004847 ORTHO05D005856 5.2e-130 468.4 381 71.7
COL.COLO4_13475 Corchorus olitorius HOM05D004847 ORTHO05D005856 4.9e-128 461.8 383 70.2
Gohir.D11G275000 Gossypium hirsutum HOM05D004847 ORTHO05D005856 4.1e-127 458.8 334 77.8
Gorai.007G296800 Gossypium raimondii HOM05D004847 ORTHO05D005856 4.1e-127 458.8 334 77.8
Gorai.004G241800 Gossypium raimondii HOM05D004847 ORTHO05D005856 5.4e-127 458.4 376 70.5
Sabra05G0035400 Salix brachista HOM05D004847 ORTHO05D005856 7.0e-127 458.0 378 70.6
Gohir.A11G264800 Gossypium hirsutum HOM05D004847 ORTHO05D005856 1.6e-126 456.8 332 78.0
Potri.013G022600 Populus trichocarpa HOM05D004847 ORTHO05D005856 5.9e-126 454.9 390 70.5
Potri.005G033200 Populus trichocarpa HOM05D004847 ORTHO05D005856 1.9e-124 449.9 378 70.6
Duzib106G0633 Durio zibethinus HOM05D004847 ORTHO05D005856 1.2e-123 447.2 385 74.0
Haze_04198 Corylus avellana HOM05D004847 ORTHO05D005856 2.1e-123 446.4 380 69.7
Gohir.A08G210800 Gossypium hirsutum HOM05D004847 ORTHO05D005856 2.1e-123 446.4 376 69.1
Prupe.6G326100 Prunus persica HOM05D004847 ORTHO05D005856 3.6e-123 445.7 382 69.6
TWI56G1294 Tripterygium wilfordii HOM05D004847 ORTHO05D005856 1.4e-122 443.7 377 69.8
TAR362G0189 Trochodendron aralioides HOM05D004847 ORTHO05D005856 1.4e-122 443.7 376 69.1
GSVIVG01000048001 Vitis vinifera HOM05D004847 ORTHO05D005856 2.9e-120 436.0 377 69.0
Eucgr.L01544 Eucalyptus grandis HOM05D004847 ORTHO05D005856 3.7e-120 435.6 377 69.2
FAN05G5722 Fragaria x ananassa HOM05D004847 ORTHO05D005856 1.4e-119 433.7 387 67.2
FAN05G5436 Fragaria x ananassa HOM05D004847 ORTHO05D005856 4.1e-119 432.2 387 66.9
TAR633G0229 Trochodendron aralioides HOM05D004847 ORTHO05D005856 5.4e-119 431.8 370 67.6
RcHm_v2.0_Chr3g0454731 Rosa chinensis HOM05D004847 ORTHO05D005856 7.0e-119 431.4 386 67.4
Duzib128G0091 Durio zibethinus HOM05D004847 ORTHO05D005856 2.7e-118 429.5 329 74.5
FvH4_6g05820 Fragaria vesca HOM05D004847 ORTHO05D005856 1.0e-117 427.6 338 72.8
FAN14G3900 Fragaria x ananassa HOM05D004847 ORTHO05D005856 1.0e-117 427.6 338 72.8
Ciclev10003680m.g Citrus clementina HOM05D004847 ORTHO05D001311 2.3e-117 426.4 408 63.2
Sabra13G0024700 Salix brachista HOM05D004847 ORTHO05D005856 3.9e-117 425.6 454 59.9
Atru.chr2.410 Acer truncatum HOM05D004847 ORTHO05D005856 1.6e-115 420.2 402 63.7
MD12G1219500 Malus domestica HOM05D004847 ORTHO05D005856 2.8e-115 419.5 386 66.1
Manes.09G166900 Manihot esculenta HOM05D004847 ORTHO05D005856 3.4e-113 412.5 385 66.0
Lalb_Chr04g0260731 Lupinus albus HOM05D004847 ORTHO05D005856 4.9e-112 408.7 338 70.4
Ca_10113_v3 Cicer arietinum L. HOM05D004847 ORTHO05D005856 1.9e-111 406.8 386 63.0
Gohir.D08G227600 Gossypium hirsutum HOM05D004847 ORTHO05D005856 1.9e-111 406.8 292 78.1
Nn4g26247 Nelumbo nucifera HOM05D004847 ORTHO05D005856 1.2e-110 404.1 380 63.7
Phvul.007G179800 Phaseolus vulgaris HOM05D004847 ORTHO05D005856 2.1e-110 403.3 408 60.3
Glyma.10G154100 Glycine max HOM05D004847 ORTHO05D005856 2.3e-109 399.8 412 58.3
Glyma.20G234200 Glycine max HOM05D004847 ORTHO05D005856 5.1e-109 398.7 404 59.4
arahy.Tifrunner.gnm1.ann1.WTPV8B Arachis hypogaea HOM05D004847 ORTHO05D005856 8.1e-107 391.3 417 57.8
arahy.Tifrunner.gnm1.ann1.91A0PW Arachis hypogaea HOM05D004847 ORTHO05D005856 9.9e-105 384.4 417 57.3
Hma1.2p1_0928F.1_g237810 Hydrangea macrophylla HOM05D004847 ORTHO05D005856 1.3e-104 384.0 381 63.0
MD04G1205400 Malus domestica HOM05D004847 ORTHO05D005856 1.7e-104 383.6 346 67.1
CANSAT54G0893 Cannabis sativa HOM05D004847 ORTHO05D005856 2.2e-104 383.3 389 62.7
PSO832G1768 Papaver somniferum HOM05D004847 ORTHO05D005856 2.9e-104 382.9 382 63.6
TWI12G0805 Tripterygium wilfordii HOM05D004847 ORTHO05D005856 1.4e-103 380.6 340 66.2
CSS0010861 Camellia sinensis var. sinensis HOM05D004847 ORTHO05D005856 3.2e-103 379.4 368 61.7
PSO210G5284 Papaver somniferum HOM05D004847 ORTHO05D005856 3.2e-103 379.4 382 63.4
Cc11_g03560 Coffea canephora HOM05D004847 ORTHO05D005856 5.4e-103 378.6 389 60.2
VMungo0720G3140 Vigna mungo HOM05D004847 ORTHO05D005856 9.2e-103 377.9 360 63.3
Nitab4.5_0000137g0030 Nicotiana tabacum HOM05D004847 ORTHO05D005856 1.2e-102 377.5 355 64.5
Psat0s3135g0240 Pisum sativum HOM05D004847 ORTHO05D005856 1.2e-102 377.5 413 56.4
Lalb_Chr02g0148231 Lupinus albus HOM05D004847 ORTHO05D005856 1.7e-101 373.6 400 57.5
SalBow3G4161 Salvia bowleyana HOM05D004847 ORTHO05D005856 3.6e-99 365.9 382 58.1
Peaxi162Scf00037g00632 Petunia axillaris HOM05D004847 ORTHO05D005856 8.1e-99 364.8 416 60.6
Actinidia24643 Actinidia chinensis HOM05D004847 ORTHO05D005856 1.4e-98 364.0 389 58.1
Nitab4.5_0003156g0010 Nicotiana tabacum HOM05D004847 ORTHO05D005856 3.1e-98 362.8 415 59.5
CsaV3_2G005250 Cucumis sativus L. HOM05D004847 ORTHO05D005856 5.2e-98 362.1 443 54.9
PGR083G0144 Punica granatum HOM05D004847 ORTHO05D005856 5.2e-98 362.1 389 62.0
Aqoxy5G00505 Aquilegia oxysepala HOM05D004847 ORTHO05D005856 3.4e-97 359.4 316 66.1
DCAR_003332 Daucus carota HOM05D004847 ORTHO05D005856 5.8e-97 358.6 373 59.2
CAN.G1034.25 Capsicum annuum HOM05D004847 ORTHO05D005856 2.9e-96 356.3 398 55.8
Dinv23942 Davidia involucrata HOM05D004847 ORTHO05D005856 3.8e-96 355.9 388 59.5
vmacro19624 Vaccinium macrocarpon HOM05D004847 ORTHO05D005856 6.4e-96 355.1 386 60.1
Lsat_1_v5_gn_9_123520 Lactuca sativa HOM05D004847 ORTHO05D005856 1.1e-95 354.4 342 62.0
Lj5A533T17 Lonicera japonica HOM05D004847 ORTHO05D005856 4.2e-95 352.4 392 56.9
Hund07068 Selenicereus undatus HOM05D004847 ORTHO05D005856 9.2e-95 351.3 385 55.8
THA.LOC104818696 Tarenaya hassleriana HOM05D004847 ORTHO05D005856 9.2e-95 351.3 440 53.6
Solyc01g099270.2 Solanum lycopersicum HOM05D004847 ORTHO05D005856 1.6e-94 350.5 300 67.7
MSTRG.27999 Avicennia marina HOM05D004847 ORTHO05D005856 2.7e-94 349.7 321 64.5
Sopen01g042820 Solanum pennellii HOM05D004847 ORTHO05D005856 2.7e-94 349.7 300 67.3
Sc16g0008460 Simmondsia chinensis HOM05D004847 ORTHO05D005856 3.5e-94 349.4 406 54.2
PGSC0003DMG401024742 Solanum tuberosum HOM05D004847 ORTHO05D005856 4.6e-94 349.0 385 56.6
Migut.B01038 Erythranthe guttata HOM05D004847 ORTHO05D005856 3.0e-93 346.3 351 61.3
MELO3C004268.2 Cucumis melo HOM05D004847 ORTHO05D005856 1.1e-92 344.4 447 53.0
Medtr7g113510 Medicago truncatula HOM05D004847 ORTHO05D005856 4.3e-92 342.4 446 50.7
MBI19_g05601_MAGBIO Magnolia biondii HOM05D004847 ORTHO05D005856 4.7e-91 339.0 387 55.6
Lj5g0019148 Lotus japonicus HOM05D004847 ORTHO05D005856 1.1e-90 337.8 474 50.2
CSS0017838 Camellia sinensis var. sinensis HOM05D004847 ORTHO05D005856 1.8e-90 337.0 338 61.5
Migut.N02003 Erythranthe guttata HOM05D004847 ORTHO05D005856 9.9e-89 331.3 395 54.7
EL10Ac4g09352 Beta vulgaris HOM05D004847 ORTHO05D005856 3.8e-88 329.3 341 60.4
Sed0004129 Sechium edule HOM05D004847 ORTHO05D005856 1.1e-87 327.8 479 49.1
AT3G05330 Arabidopsis thaliana HOM05D004847 ORTHO05D005856 4.2e-87 325.9 387 55.0
Thhalv10020613m.g Eutrema salsugineum HOM05D004847 ORTHO05D005856 1.6e-86 323.9 398 54.0
Migut.O00711 Erythranthe guttata HOM05D004847 ORTHO05D005856 1.0e-85 321.2 350 59.1
ClCG02G015810 Citrullus lanatus HOM05D000141 ORTHO05D001311 3.9e-85 319.3 370 57.0
DCAR_029413 Daucus carota HOM05D004847 ORTHO05D005856 6.6e-85 318.5 388 52.8
BNapus_Darmor_BZH_scaffold_114p00170 Brassica napus HOM05D004847 ORTHO05D005856 5.6e-84 315.5 364 56.9
Glyma.19G235300 Glycine max HOM05D004847 ORTHO05D005856 1.3e-83 314.3 336 59.5
Ah.06g189340 Amaranthus hybridus HOM05D004847 ORTHO05D005856 4.8e-83 312.4 342 58.8
HanXRQChr09g0248411 Helianthus annuus HOM05D004847 ORTHO05D005856 6.2e-83 312.0 393 53.4
Oeu017487.1 Olea europaea HOM05D004847 ORTHO05D005856 1.1e-82 311.2 350 57.1
BraSC132t45510Z Brassica rapa HOM05D004847 ORTHO05D005856 1.4e-82 310.8 364 56.0
ECA240G3864 Erigeron canadensis HOM05D004847 ORTHO05D005856 2.4e-82 310.1 364 55.2
BolC1t05700H Brassica oleracea HOM05D004847 ORTHO05D005856 6.9e-82 308.5 364 56.3
AL3G15780 Arabidopsis lyrata HOM05D004847 ORTHO05D005856 1.5e-81 307.4 382 52.4
CARHR079680 Cardamine hirsuta HOM05D004847 ORTHO05D005856 1.5e-81 307.4 363 56.5
AUR62000830 Chenopodium quinoa HOM05D004847 ORTHO05D005856 1.5e-81 307.4 344 58.1
A05p42290 Brassica napus HOM05D004847 ORTHO05D005856 1.3e-80 304.3 475 45.7
BraA05t23024Z Brassica rapa HOM05D004847 ORTHO05D005856 1.7e-80 303.9 474 45.8
Carub.0003s0461 Capsella rubella HOM05D004847 ORTHO05D005856 1.7e-80 303.9 397 52.1
C05p61870 Brassica napus HOM05D004847 ORTHO05D005856 2.2e-80 303.5 346 57.5
BolC5t34847H Brassica oleracea HOM05D004847 ORTHO05D005856 2.2e-80 303.5 346 57.5
TPR.G33190 Trifolium pratense HOM05D004847 ORTHO05D005856 2.9e-80 303.1 273 63.0
AUR62005144 Chenopodium quinoa HOM05D004847 ORTHO05D005856 5.4e-79 298.9 334 57.5
Phvul.006G091600 Phaseolus vulgaris HOM05D004847 ORTHO05D005856 1.8e-77 293.9 416 49.5
Sp3g04200 Schrenkiella parvula HOM05D004847 ORTHO05D005856 9.6e-76 288.1 389 50.6
Aa31LG5G15720 Aethionema arabicum HOM05D000141 ORTHO05D001311 2.8e-75 286.6 331 54.7
BcaC05g30136 Brassica carinata HOM05D004847 ORTHO05D005856 4.8e-75 285.8 332 57.5
Rhsim05G0141800 Rhododendron simsii HOM05D004847 ORTHO05D005856 1.4e-74 284.3 384 51.8
CDE10G0375 Ceratophyllum demersum HOM05D004847 ORTHO05D005856 1.9e-71 273.9 348 51.4
TPR.G11389 Trifolium pratense HOM05D004847 ORTHO05D005856 5.1e-69 265.8 295 58.3
Glyma.03G237700 Glycine max HOM05D004847 ORTHO05D005856 6.7e-69 265.4 313 56.2
Medtr1g082940 Medicago truncatula HOM05D004847 ORTHO05D005856 7.4e-68 261.9 340 50.0
HPP92_003277 Vanilla planifolia HOM05D004847 ORTHO05D005856 9.6e-68 261.5 336 51.2
Cpa.g.sc48.48 Carica papaya HOM05D004847 ORTHO05D005856 1.3e-67 261.2 253 64.0
Actinidia28666 Actinidia chinensis HOM05D004847 ORTHO05D005856 7.6e-65 251.9 359 49.0
Zm00001eb286860 Zea mays HOM05D004847 ORTHO05D005856 2.3e-61 240.4 430 45.6
Ca_09350_v3 Cicer arietinum L. HOM05D004847 ORTHO05D005856 3.9e-61 239.6 329 50.2
VMungo0540G0069 Vigna mungo HOM05D004847 ORTHO05D005856 5.1e-61 239.2 331 50.8
BcaC05g30154 Brassica carinata HOM05D004847 ORTHO05D005856 1.5e-57 227.6 262 56.5
ATR0626G214 Amborella trichopoda HOM05D004847 ORTHO05D005856 7.7e-57 225.3 390 42.6
CDE10G0883 Ceratophyllum demersum HOM05D004847 ORTHO05D005856 3.8e-56 223.0 447 39.4
SGA_v2.0_scaffold81G26072 Striga asiatica HOM05D004847 ORTHO05D005856 2.2e-48 197.2 370 43.2
TPR.G6113 Trifolium pratense HOM05D006420 ORTHO05D008009 3.6e-46 189.9 129 75.2
SGA_v2.0_scaffold80G25911 Striga asiatica HOM05D004847 ORTHO05D005856 6.1e-46 189.1 352 43.8
Manes.08G120800 Manihot esculenta HOM05D004847 ORTHO05D005856 4.1e-42 176.4 379 40.9
Os02g0459300 Oryza sativa ssp. japonica HOM05D004847 ORTHO05D005856 1.0e-37 161.8 262 50.0
Psat0s212g0040 Pisum sativum HOM05D004847 ORTHO05D005856 1.4e-37 161.4 345 38.8
CDE10G0745 Ceratophyllum demersum HOM05D004847 ORTHO05D005856 3.0e-29 133.7 158 55.7
Cpa.g.sc48.49 Carica papaya HOM05D004847 ORTHO05D005856 1.5e-28 131.3 76 89.5
GSVIVG01000050001 Vitis vinifera HOM05D000141 ORTHO05D001311 7.0e-26 122.5 84 73.8
SEGI_00809 Sequoiadendron giganteum HOM05D004847 ORTHO05D005856 2.5e-23 114.0 234 38.9
SHI18142 Sapria himalayana HOM05D000141 ORTHO05D001311 5.5e-23 112.8 342 36.0
Zm00001eb269750 Zea mays HOM05D004847 ORTHO05D005856 3.4e-20 103.6 240 38.8
Ca_09354_v3 Cicer arietinum L. HOM05D004847 ORTHO05D005856 4.8e-19 99.8 66 75.8
Gohir.D12G153350 Gossypium hirsutum HOM05D004847 ORTHO05D005856 7.0e-18 95.9 66 72.7
MD02G1275700 Malus domestica HOM05D004847 ORTHO05D005856 7.0e-18 95.9 68 72.1
MD00G1120700 Malus domestica HOM05D004847 ORTHO05D005856 1.2e-17 95.1 68 72.1
Actinidia19789 Actinidia chinensis HOM05D004847 ORTHO05D005856 1.6e-17 94.7 84 65.5
Gorai.004G124500 Gossypium raimondii HOM05D004847 ORTHO05D005856 7.7e-17 92.4 63 66.7
Zm00001eb092520 Zea mays HOM05D004847 ORTHO05D005856 1.0e-16 92.0 194 42.8
SEGI_03169 Sequoiadendron giganteum HOM05D004847 ORTHO05D005856 1.3e-16 91.7 165 42.4
Lsat_1_v5_gn_8_18301 Lactuca sativa HOM05D004847 ORTHO05D005856 6.6e-16 89.4 98 50.0
Psat3g073720 Pisum sativum HOM05D004847 ORTHO05D005856 2.8e-14 84.0 98 50.0
Gohir.D08G115550 Gossypium hirsutum HOM05D004847 ORTHO05D005856 1.8e-13 81.3 54 72.2
C05p10080 Brassica napus HOM05D004847 ORTHO05D005856 3.2e-10 70.5 236 33.9
Gohir.A01G045000 Gossypium hirsutum HOM05D004847 ORTHO05D005856 7.8e-09 65.9 53 69.8
Gohir.D04G107600 Gossypium hirsutum HOM05D004847 ORTHO05D005856 7.8e-09 65.9 53 69.8
Gohir.D09G147300 Gossypium hirsutum HOM05D004847 ORTHO05D005856 7.8e-09 65.9 53 69.8
Gohir.D10G096100 Gossypium hirsutum HOM05D004847 ORTHO05D005856 7.8e-09 65.9 53 69.8
Gohir.A10G185000 Gossypium hirsutum HOM05D000639 ORTHO05D020118 1.0e-08 65.5 53 69.8
Gohir.D07G076600 Gossypium hirsutum HOM05D000639 ORTHO05D020118 1.7e-08 64.7 53 67.9
Gohir.D10G149400 Gossypium hirsutum HOM05D000639 ORTHO05D020118 2.3e-08 64.3 53 67.9
BolC1t05697H Brassica oleracea HOM05D004847 ORTHO05D005856 6.6e-08 62.8 121 42.1
Actinidia19788 Actinidia chinensis HOM05D004847 ORTHO05D005856 1.9e-07 61.2 36 83.3
Gohir.D05G046500 Gossypium hirsutum HOM05D004847 ORTHO05D005856 3.3e-07 60.5 53 66.0


User provided reference genes

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