Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.08G159700 Carya illinoinensis HOM05D014310 ORTHO05D003404 5.0e-109 397.9 215 100.0
CiPaw.08G159900 Carya illinoinensis HOM05D014310 ORTHO05D003404 1.9e-60 236.5 149 85.2
CiPaw.08G160100 Carya illinoinensis HOM05D014310 ORTHO05D003404 9.5e-60 234.2 149 84.6
CiPaw.08G159800 Carya illinoinensis HOM05D014310 ORTHO05D003404 1.2e-59 233.8 149 89.3
CiPaw.07G023600 Carya illinoinensis HOM05D003556 ORTHO05D003404 4.4e-33 145.6 145 55.2
Cfa006647 Carpinus fangiana HOM05D003556 ORTHO05D003404 1.6e-30 137.1 144 54.9
Cfa006646 Carpinus fangiana HOM05D003556 ORTHO05D003404 2.7e-30 136.3 144 54.9
Cfa006651 Carpinus fangiana HOM05D003556 ORTHO05D003404 2.7e-30 136.3 153 52.9
Cfa006653 Carpinus fangiana HOM05D003556 ORTHO05D003404 8.6e-29 131.3 147 53.7
Cfa014668 Carpinus fangiana HOM05D003556 ORTHO05D003404 2.5e-28 129.8 150 52.7
Cfa006645 Carpinus fangiana HOM05D014310 ORTHO05D003404 5.6e-28 128.6 146 50.7
QL03p019667 Quercus lobata HOM05D003556 ORTHO05D003404 5.6e-28 128.6 147 49.7
QL03p019019 Quercus lobata HOM05D003556 ORTHO05D003404 1.6e-27 127.1 147 49.0
Cfa014665 Carpinus fangiana HOM05D003556 ORTHO05D003404 3.6e-27 125.9 149 50.3
QL03p019662 Quercus lobata HOM05D003556 ORTHO05D003404 3.6e-27 125.9 147 49.0
QL08p042930 Quercus lobata HOM05D003556 ORTHO05D003404 3.6e-27 125.9 147 49.0
CANSAT54G0162 Cannabis sativa HOM05D003556 ORTHO05D003404 6.2e-27 125.2 147 51.0
CANSAT54G1773 Cannabis sativa HOM05D003556 ORTHO05D003404 4.0e-26 122.5 149 49.7
Haze_04119 Corylus avellana HOM05D014310 ORTHO05D003404 1.5e-25 120.6 142 52.1
Ciclev10002648m.g Citrus clementina HOM05D003556 ORTHO05D003404 4.9e-24 115.5 150 44.7
QL03p019550 Quercus lobata HOM05D003556 ORTHO05D003404 8.4e-24 114.8 147 46.3
Cpa.g.sc48.109 Carica papaya HOM05D003556 ORTHO05D003404 1.2e-22 110.9 160 42.5
Dinv40360 Davidia involucrata HOM05D003556 ORTHO05D003404 4.6e-22 109.0 151 44.4
TWI56G0141 Tripterygium wilfordii HOM05D001445 ORTHO05D003404 4.6e-22 109.0 152 42.1
TWI60G0816 Tripterygium wilfordii HOM05D003556 ORTHO05D003404 2.3e-21 106.7 148 42.6
TWI12G1373 Tripterygium wilfordii HOM05D003556 ORTHO05D003404 3.9e-21 105.9 148 42.6
CiPaw.07G023500 Carya illinoinensis HOM05D003556 ORTHO05D003404 1.1e-20 104.4 148 39.9
TAR362G0992 Trochodendron aralioides HOM05D003556 ORTHO05D003404 2.8e-19 99.8 149 44.3
Manes.08G115700 Manihot esculenta HOM05D001445 ORTHO05D003404 1.4e-18 97.4 152 40.1
Manes.08G115800 Manihot esculenta HOM05D001445 ORTHO05D003404 1.8e-18 97.1 152 40.1
TAR216G0004 Trochodendron aralioides HOM05D003556 ORTHO05D003404 3.1e-18 96.3 165 41.8
ClCG03G017200 Citrullus lanatus HOM05D003556 ORTHO05D003404 9.0e-18 94.7 149 38.3
CsaV3_1G038650 Cucumis sativus L. HOM05D003556 ORTHO05D003404 9.0e-18 94.7 149 38.3
MBI19_g44106_MAGBIO Magnolia biondii HOM05D003556 ORTHO05D003404 9.0e-18 94.7 149 40.9
Dinv40359 Davidia involucrata HOM05D003556 ORTHO05D003404 1.5e-17 94.0 140 41.4
Aqoxy2G02898 Aquilegia oxysepala HOM05D003556 ORTHO05D003404 1.7e-16 90.5 151 37.7
PSO210G6958 Papaver somniferum HOM05D003556 ORTHO05D003404 1.7e-16 90.5 148 37.8
MELO3C015291.2 Cucumis melo HOM05D003556 ORTHO05D003404 2.2e-16 90.1 148 38.5
Sed0024461 Sechium edule HOM05D003556 ORTHO05D003404 3.8e-16 89.4 151 35.8
PSO832G2602 Papaver somniferum HOM05D003556 ORTHO05D003404 6.4e-16 88.6 175 34.9
Nn3g21538 Nelumbo nucifera HOM05D003556 ORTHO05D003404 1.4e-15 87.4 150 36.7
Potri.006G134900 Populus trichocarpa HOM05D004113 ORTHO05D003404 1.9e-15 87.0 149 33.6
Rhsim05G0137100 Rhododendron simsii HOM05D003556 ORTHO05D003404 3.2e-15 86.3 149 34.2
Thecc.01G303600 Theobroma cacao HOM05D003556 ORTHO05D003404 4.2e-15 85.9 154 37.7
Sed0028173 Sechium edule HOM05D003556 ORTHO05D003404 5.4e-15 85.5 161 34.8
Aqoxy5G00783 Aquilegia oxysepala HOM05D003556 ORTHO05D003404 9.3e-15 84.7 148 37.2
Manes.09G173500 Manihot esculenta HOM05D003556 ORTHO05D003404 2.1e-14 83.6 148 37.8
TWI34G1970 Tripterygium wilfordii HOM05D001445 ORTHO05D003404 4.6e-14 82.4 208 32.7
COL.COLO4_23319 Corchorus olitorius HOM05D003556 ORTHO05D003404 1.8e-13 80.5 155 32.9
Thecc.09G068900 Theobroma cacao HOM05D001445 ORTHO05D003404 2.3e-13 80.1 156 35.3
Duzib133G0465 Durio zibethinus HOM05D003556 ORTHO05D003404 3.0e-13 79.7 174 33.3
AUR62008689 Chenopodium quinoa HOM05D003556 ORTHO05D003404 6.7e-13 78.6 149 35.6
AUR62025555 Chenopodium quinoa HOM05D003556 ORTHO05D003404 6.7e-13 78.6 149 35.6
MBI18_g25093_MAGBIO Magnolia biondii HOM05D003556 ORTHO05D003404 8.7e-13 78.2 149 38.9
CANSAT56G1763 Cannabis sativa HOM05D001445 ORTHO05D001261 1.9e-12 77.0 151 36.4
ATR1149G037 Amborella trichopoda HOM05D003556 ORTHO05D003404 2.5e-12 76.6 138 37.7
Aqoxy7G04181 Aquilegia oxysepala HOM05D001445 ORTHO05D003404 2.5e-12 76.6 151 35.8
CANSAT56G2517 Cannabis sativa HOM05D001445 ORTHO05D003404 2.5e-12 76.6 151 37.1
Actinidia19773 Actinidia chinensis HOM05D003556 ORTHO05D003404 1.3e-11 74.3 145 33.1
ATR0693G401 Amborella trichopoda HOM05D001445 ORTHO05D001261 4.8e-11 72.4 153 32.7
Glyma.17G044900 Glycine max HOM05D001445 ORTHO05D003404 6.2e-11 72.0 160 33.1
Haze_04964 Corylus avellana HOM05D003556 ORTHO05D003404 1.1e-10 71.2 147 33.3
FAN24G2751 Fragaria x ananassa HOM05D003556 ORTHO05D003404 1.4e-10 70.9 151 31.1
Eucgr.C00759 Eucalyptus grandis HOM05D001445 ORTHO05D001261 2.4e-10 70.1 146 34.2
FAN15G3222 Fragaria x ananassa HOM05D003556 ORTHO05D003404 2.4e-10 70.1 151 31.1
EL10Ac7g18176 Beta vulgaris HOM05D003556 ORTHO05D003404 3.1e-10 69.7 149 32.9
RcHm_v2.0_Chr7g0207981 Rosa chinensis HOM05D001445 ORTHO05D001261 3.1e-10 69.7 160 31.9
Lj4g0015413 Lotus japonicus HOM05D001445 ORTHO05D003404 4.0e-10 69.3 172 32.6
Lalb_Chr07g0181461 Lupinus albus HOM05D001445 ORTHO05D003404 4.0e-10 69.3 116 37.1
QL12p028082 Quercus lobata HOM05D003556 ORTHO05D003404 5.3e-10 68.9 142 33.8
FvH4_5g20930 Fragaria vesca HOM05D001445 ORTHO05D001261 6.9e-10 68.6 160 31.9
FAN18G2178 Fragaria x ananassa HOM05D001445 ORTHO05D001261 6.9e-10 68.6 153 32.7
Atru.chr5.1112 Acer truncatum HOM05D003556 ORTHO05D003404 9.0e-10 68.2 159 31.4
FAN20G1394 Fragaria x ananassa HOM05D003556 ORTHO05D003404 9.0e-10 68.2 151 29.8
VMungo1215G2168 Vigna mungo HOM05D001445 ORTHO05D003404 9.0e-10 68.2 156 32.1
PGR119G1148 Punica granatum HOM05D003556 ORTHO05D003404 1.2e-09 67.8 144 32.6
CiPaw.08G093400 Carya illinoinensis HOM05D003556 ORTHO05D003404 2.0e-09 67.0 155 31.6
Actinidia21437 Actinidia chinensis HOM05D003556 ORTHO05D003404 3.4e-09 66.2 153 32.7
CDE06G2513 Ceratophyllum demersum HOM05D001445 ORTHO05D001261 4.5e-09 65.9 146 32.9
Sc25g0000800 Simmondsia chinensis HOM05D003556 ORTHO05D003404 4.5e-09 65.9 170 30.6
MD03G1290800 Malus domestica HOM05D003556 ORTHO05D003404 5.8e-09 65.5 149 29.5
Potri.004G016500 Populus trichocarpa HOM05D003556 ORTHO05D003404 5.8e-09 65.5 152 32.9
Lalb_Chr11g0066641 Lupinus albus HOM05D001445 ORTHO05D003404 7.6e-09 65.1 129 34.1
Manes.03G045700 Manihot esculenta HOM05D004113 ORTHO05D005233 9.9e-09 64.7 135 30.4
DCAR_028534 Daucus carota HOM05D004113 ORTHO05D005233 2.2e-08 63.5 149 28.9
FAN27G3015 Fragaria x ananassa HOM05D003556 ORTHO05D003404 2.2e-08 63.5 151 29.8
Potri.005G023050 Populus trichocarpa HOM05D014310 ORTHO05D030505 2.2e-08 63.5 157 31.2
ECA238G0978 Erigeron canadensis HOM05D000281 ORTHO05D000290 2.9e-08 63.2 147 33.3
Sabra05G0029100 Salix brachista HOM05D014310 ORTHO05D030505 2.9e-08 63.2 155 28.4
MD11G1307600 Malus domestica HOM05D003556 ORTHO05D003404 3.8e-08 62.8 152 28.9
Haze_27759 Corylus avellana HOM05D030505 ORTHO05D003404 6.4e-08 62.0 56 58.9
MELO3C017944.2 Cucumis melo HOM05D003556 ORTHO05D003404 6.4e-08 62.0 140 34.3
MBI04_g03340_MAGBIO Magnolia biondii HOM05D001445 ORTHO05D001261 6.4e-08 62.0 161 29.8
Sabra01G0081700 Salix brachista HOM05D000281 ORTHO05D009440 6.4e-08 62.0 181 32.0
THA.LOC104801288 Tarenaya hassleriana HOM05D003556 ORTHO05D003404 6.4e-08 62.0 153 32.0
Ah.01g010410 Amaranthus hybridus HOM05D001445 ORTHO05D001261 8.4e-08 61.6 135 28.9
CSS0025537 Camellia sinensis var. sinensis HOM05D003556 ORTHO05D003404 8.4e-08 61.6 148 31.8
CSS0050483 Camellia sinensis var. sinensis HOM05D003556 ORTHO05D003404 8.4e-08 61.6 148 31.8
Potri.003G086500 Populus trichocarpa HOM05D001445 ORTHO05D001261 8.4e-08 61.6 142 33.8
Aqoxy7G00699 Aquilegia oxysepala HOM05D000281 ORTHO05D000290 1.1e-07 61.2 157 30.6
CSS0043898 Camellia sinensis var. sinensis HOM05D003556 ORTHO05D003404 1.1e-07 61.2 151 33.1
Potri.001G108200 Populus trichocarpa HOM05D000281 ORTHO05D009440 1.1e-07 61.2 193 31.6
FAN13G3027 Fragaria x ananassa HOM05D001445 ORTHO05D001261 1.9e-07 60.5 147 30.6
CDE07G0552 Ceratophyllum demersum HOM05D001445 ORTHO05D003404 2.4e-07 60.1 146 30.8
Dinv29549 Davidia involucrata HOM05D003146 ORTHO05D001819 2.4e-07 60.1 149 30.2
Sabra11G0000800 Salix brachista HOM05D003556 ORTHO05D003404 2.4e-07 60.1 150 34.0
PSO782G0985 Papaver somniferum HOM05D001445 ORTHO05D001261 3.2e-07 59.7 159 29.6
CsaV3_4G000950 Cucumis sativus L. HOM05D003556 ORTHO05D003404 4.2e-07 59.3 146 32.2
Atru.chr1.678 Acer truncatum HOM05D000281 ORTHO05D000290 5.5e-07 58.9 167 29.3
TAR375G0630 Trochodendron aralioides HOM05D001445 ORTHO05D001261 5.5e-07 58.9 157 31.8
VMungo0720G1834 Vigna mungo HOM05D003556 ORTHO05D003404 7.1e-07 58.5 148 29.1
ClCG10G011070 Citrullus lanatus HOM05D003556 ORTHO05D003404 9.3e-07 58.2 179 27.9
Manes.06G136100 Manihot esculenta HOM05D000281 ORTHO05D000290 9.3e-07 58.2 159 30.8
Sabra12G0095600 Salix brachista HOM05D000281 ORTHO05D000290 9.3e-07 58.2 154 31.2
Sed0018956 Sechium edule HOM05D003556 ORTHO05D003404 9.3e-07 58.2 147 35.4
COL.COLO4_14142 Corchorus olitorius HOM05D000281 ORTHO05D000290 1.2e-06 57.8 160 30.6
SEGI_30827 Sequoiadendron giganteum HOM05D000281 ORTHO05D050981 1.2e-06 57.8 161 31.7
TAR375G1152 Trochodendron aralioides HOM05D001445 ORTHO05D001261 1.2e-06 57.8 156 33.3
Thhalv10001105m.g Eutrema salsugineum HOM05D001445 ORTHO05D001261 1.6e-06 57.4 144 29.9
Potri.001G127500 Populus trichocarpa HOM05D003556 ORTHO05D003404 1.6e-06 57.4 148 34.5
Aa31LG1G29000 Aethionema arabicum HOM05D000281 ORTHO05D008643 2.1e-06 57.0 166 30.7
Aa31LG5G1910 Aethionema arabicum HOM05D003556 ORTHO05D003404 2.1e-06 57.0 147 29.3
PSO782G4884 Papaver somniferum HOM05D001445 ORTHO05D001261 2.1e-06 57.0 155 32.9
Sc07g0008930 Simmondsia chinensis HOM05D001445 ORTHO05D001261 2.1e-06 57.0 139 28.8
PGSC0003DMG400010815 Solanum tuberosum HOM05D000281 ORTHO05D000290 2.1e-06 57.0 162 30.9
ATR0807G193 Amborella trichopoda HOM05D000281 ORTHO05D008643 2.7e-06 56.6 151 31.1
BcaC02g12551 Brassica carinata HOM05D000281 ORTHO05D008643 2.7e-06 56.6 155 32.3
A02p30500 Brassica napus HOM05D001445 ORTHO05D001261 2.7e-06 56.6 137 32.8
A05p00290 Brassica napus HOM05D000281 ORTHO05D008643 2.7e-06 56.6 155 32.3
C04p00200 Brassica napus HOM05D000281 ORTHO05D008643 2.7e-06 56.6 155 32.3
BraA02t08068Z Brassica rapa HOM05D001445 ORTHO05D001261 2.7e-06 56.6 137 32.8
BraA05t19026Z Brassica rapa HOM05D000281 ORTHO05D008643 2.7e-06 56.6 155 32.3
FvH4_5g20940 Fragaria vesca HOM05D001445 ORTHO05D001261 2.7e-06 56.6 146 34.2
FAN18G4149 Fragaria x ananassa HOM05D001445 ORTHO05D001261 2.7e-06 56.6 146 34.2
Lj8C40T10 Lonicera japonica HOM05D000281 ORTHO05D000290 2.7e-06 56.6 159 34.0
HPP92_004344 Vanilla planifolia HOM05D014663 ORTHO05D001261 2.7e-06 56.6 133 31.6
CSS0044540 Camellia sinensis var. sinensis HOM05D003556 ORTHO05D003404 3.5e-06 56.2 150 29.3
PSO081G0057 Papaver somniferum HOM05D001445 ORTHO05D001261 3.5e-06 56.2 151 27.2
Sed0025500 Sechium edule HOM05D003146 ORTHO05D001819 3.5e-06 56.2 150 27.3
Solyc03g083720.1 Solanum lycopersicum HOM05D000281 ORTHO05D000290 3.5e-06 56.2 162 29.6
Carub.0008s0091 Capsella rubella HOM05D001445 ORTHO05D001261 4.6e-06 55.8 137 28.5
CARHR174490 Cardamine hirsuta HOM05D001445 ORTHO05D001261 4.6e-06 55.8 142 29.6
Manes.10G035700 Manihot esculenta HOM05D004113 ORTHO05D005233 4.6e-06 55.8 154 30.5
Potri.012G127400 Populus trichocarpa HOM05D000281 ORTHO05D000290 4.6e-06 55.8 156 31.4
BolC4t21667H Brassica oleracea HOM05D000281 ORTHO05D008643 6.0e-06 55.5 155 31.6
BraA06t25077Z Brassica rapa HOM05D000281 ORTHO05D009440 6.0e-06 55.5 151 28.5
Carub.0006s3492 Capsella rubella HOM05D003556 ORTHO05D003404 6.0e-06 55.5 148 30.4
Cpa.g.sc52.68 Carica papaya HOM05D001445 ORTHO05D001261 6.0e-06 55.5 138 29.7
FAN08G1111 Fragaria x ananassa HOM05D001445 ORTHO05D001261 6.0e-06 55.5 146 33.6
Gohir.A12G129100 Gossypium hirsutum HOM05D003556 ORTHO05D003404 6.0e-06 55.5 150 27.3
Nitab4.5_0005440g0020 Nicotiana tabacum HOM05D003146 ORTHO05D001819 6.0e-06 55.5 152 25.7
Potri.005G023100 Populus trichocarpa HOM05D014310 ORTHO05D030505 6.0e-06 55.5 158 29.7
Potri.005G023201 Populus trichocarpa HOM05D014310 ORTHO05D030505 6.0e-06 55.5 158 29.7
RcHm_v2.0_Chr7g0207991 Rosa chinensis HOM05D001445 ORTHO05D001261 6.0e-06 55.5 149 32.2
AT5G46940 Arabidopsis thaliana HOM05D001445 ORTHO05D001261 7.9e-06 55.1 135 27.4
Cc11_g04920 Coffea canephora HOM05D003146 ORTHO05D001819 7.9e-06 55.1 153 28.8
PSO170G5213 Papaver somniferum HOM05D001445 ORTHO05D001261 7.9e-06 55.1 129 29.5
Peaxi162Scf00241g00053 Petunia axillaris HOM05D000281 ORTHO05D000290 7.9e-06 55.1 164 31.7
Rhsim13G0008900 Rhododendron simsii HOM05D003556 ORTHO05D003404 7.9e-06 55.1 152 32.2
Sopen03g023520 Solanum pennellii HOM05D000281 ORTHO05D000290 7.9e-06 55.1 162 29.6
Sopen09g028760 Solanum pennellii HOM05D003146 ORTHO05D001819 7.9e-06 55.1 156 30.1


User provided reference genes

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