Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.08G152800 Carya illinoinensis HOM05D009264 ORTHO05D009202 1.6e-56 222.6 122 100.0
CiPaw.07G033300 Carya illinoinensis HOM05D009264 ORTHO05D009202 3.1e-15 85.5 128 57.8
QL03p008780 Quercus lobata HOM05D009264 ORTHO05D009202 5.3e-15 84.7 104 55.8
QL03p013046 Quercus lobata HOM05D009264 ORTHO05D009202 5.3e-15 84.7 104 55.8
CiPaw.07G033600 Carya illinoinensis HOM05D009264 ORTHO05D009202 6.9e-15 84.3 102 60.8
Haze_04025 Corylus avellana HOM05D009264 ORTHO05D009202 1.2e-14 83.6 114 54.4
Cfa006734 Carpinus fangiana HOM05D009264 ORTHO05D009202 1.5e-14 83.2 139 50.4
FAN09G1104 Fragaria x ananassa HOM05D009264 ORTHO05D009202 2.9e-13 79.0 120 49.2
Hma1.2p1_0052F.1_g030560 Hydrangea macrophylla HOM05D009264 ORTHO05D009202 2.9e-13 79.0 141 44.7
RcHm_v2.0_Chr3g0457951 Rosa chinensis HOM05D009264 ORTHO05D009202 4.9e-13 78.2 127 48.8
FAN02G1552 Fragaria x ananassa HOM05D009264 ORTHO05D009202 3.2e-12 75.5 120 49.2
FvH4_6g08100 Fragaria vesca HOM05D009264 ORTHO05D009202 4.2e-12 75.1 120 46.7
FAN14G2966 Fragaria x ananassa HOM05D009264 ORTHO05D009202 4.2e-12 75.1 120 46.7
Thecc.05G327000 Theobroma cacao HOM05D021022 ORTHO05D009202 3.5e-11 72.0 135 45.9
FAN05G0864 Fragaria x ananassa HOM05D009264 ORTHO05D009202 4.6e-11 71.6 120 45.8
CSS0022072 Camellia sinensis var. sinensis HOM05D009264 ORTHO05D009202 1.8e-10 69.7 122 45.1
Potri.005G006000 Populus trichocarpa HOM05D014622 ORTHO05D009202 1.8e-10 69.7 132 46.2
Potri.005G006200 Populus trichocarpa HOM05D014622 ORTHO05D009202 1.8e-10 69.7 131 46.6
Potri.013G005300 Populus trichocarpa HOM05D014622 ORTHO05D009202 6.7e-10 67.8 127 44.9
QL12p033964 Quercus lobata HOM05D008942 ORTHO05D009202 6.7e-10 67.8 126 43.7
CSS0039740 Camellia sinensis var. sinensis HOM05D009264 ORTHO05D009202 8.7e-10 67.4 122 45.9
Thecc.01G321000 Theobroma cacao HOM05D008942 ORTHO05D009202 8.7e-10 67.4 124 43.5
Ciclev10013538m.g Citrus clementina HOM05D009264 ORTHO05D009202 1.1e-09 67.0 132 40.9
Gohir.D13G183600 Gossypium hirsutum HOM05D021022 ORTHO05D009202 1.5e-09 66.6 137 44.5
Haze_05106 Corylus avellana HOM05D008942 ORTHO05D009202 1.9e-09 66.2 102 44.1
Gorai.013G208900 Gossypium raimondii HOM05D021022 ORTHO05D009202 2.5e-09 65.9 137 44.5
Duzib128G1262 Durio zibethinus HOM05D021022 ORTHO05D009202 4.3e-09 65.1 123 48.0
Phvul.001G223400 Phaseolus vulgaris HOM05D011874 ORTHO05D009202 4.3e-09 65.1 147 34.7
PGR083G1195 Punica granatum HOM05D009264 ORTHO05D009202 5.6e-09 64.7 125 40.8
Actinidia35505 Actinidia chinensis HOM05D009264 ORTHO05D009202 9.6e-09 63.9 100 41.0
Cfa004866 Carpinus fangiana HOM05D008942 ORTHO05D009202 1.6e-08 63.2 103 42.7
Gohir.A13G177100 Gossypium hirsutum HOM05D021022 ORTHO05D009202 1.6e-08 63.2 142 43.0
RcHm_v2.0_Chr3g0457921 Rosa chinensis HOM05D009264 ORTHO05D009202 2.8e-08 62.4 136 43.4
Actinidia01668 Actinidia chinensis HOM05D009264 ORTHO05D009202 3.7e-08 62.0 95 42.1
CiPaw.07G122200 Carya illinoinensis HOM05D008942 ORTHO05D009202 3.7e-08 62.0 122 39.3
Glyma.19G226800 Glycine max HOM05D011874 ORTHO05D009202 6.2e-08 61.2 151 37.7
Lj1g0011687 Lotus japonicus HOM05D011874 ORTHO05D009202 6.2e-08 61.2 110 40.0
TAR633G2549 Trochodendron aralioides HOM05D009264 ORTHO05D009202 6.2e-08 61.2 122 45.9
Aqoxy2G02597 Aquilegia oxysepala HOM05D009264 ORTHO05D009202 1.1e-07 60.5 124 40.3
Duzib138G1053 Durio zibethinus HOM05D008942 ORTHO05D009202 1.1e-07 60.5 107 39.3
Potri.002G190700 Populus trichocarpa HOM05D008942 ORTHO05D009202 1.1e-07 60.5 127 34.6
SalBow7G0413 Salvia bowleyana HOM05D009264 ORTHO05D009202 1.1e-07 60.5 123 41.5
Sabra02G0164800 Salix brachista HOM05D008942 ORTHO05D009202 1.4e-07 60.1 126 34.1
Glyma.03G229500 Glycine max HOM05D011874 ORTHO05D009202 1.8e-07 59.7 86 44.2
Nn3g21851 Nelumbo nucifera HOM05D008325 ORTHO05D010336 1.8e-07 59.7 120 40.8
Sabra14G0085900 Salix brachista HOM05D008942 ORTHO05D009202 1.8e-07 59.7 126 36.5
Actinidia16886 Actinidia chinensis HOM05D009264 ORTHO05D009202 2.4e-07 59.3 124 41.1
arahy.Tifrunner.gnm1.ann1.4GQ7KG Arachis hypogaea HOM05D011874 ORTHO05D009202 2.4e-07 59.3 85 50.6
Manes.01G232200 Manihot esculenta HOM05D008942 ORTHO05D009202 2.4e-07 59.3 128 39.1
Manes.01G232300 Manihot esculenta HOM05D008942 ORTHO05D009202 3.1e-07 58.9 128 38.3
QL12p033984 Quercus lobata HOM05D008942 ORTHO05D009202 4.0e-07 58.5 127 37.8
TPR.G3019 Trifolium pratense HOM05D008942 ORTHO05D009202 5.3e-07 58.2 122 43.4
Duzib138G0801 Durio zibethinus HOM05D022988 ORTHO05D012858 6.9e-07 57.8 123 43.9
Potri.014G115800 Populus trichocarpa HOM05D008942 ORTHO05D009202 6.9e-07 57.8 128 39.1
QL12p034826 Quercus lobata HOM05D008942 ORTHO05D009202 6.9e-07 57.8 126 41.3
Nn4g25438 Nelumbo nucifera HOM05D008942 ORTHO05D009202 9.0e-07 57.4 129 43.4
CiPaw.08G085100 Carya illinoinensis HOM05D008942 ORTHO05D009202 1.2e-06 57.0 137 40.9
Nn4g25440 Nelumbo nucifera HOM05D008942 ORTHO05D009202 1.2e-06 57.0 96 46.9
VMungo0720G2651 Vigna mungo HOM05D011874 ORTHO05D009202 1.2e-06 57.0 147 38.1
Psat0s802g0040 Pisum sativum HOM05D024167 ORTHO05D009202 2.0e-06 56.2 108 38.0
Psat3g014720 Pisum sativum HOM05D011874 ORTHO05D009202 2.0e-06 56.2 151 37.7
VMungo1383G0753 Vigna mungo HOM05D011874 ORTHO05D009202 2.0e-06 56.2 145 36.6
Lalb_Chr15g0077701 Lupinus albus HOM05D011874 ORTHO05D009202 4.5e-06 55.1 106 40.6
CSS0006203 Camellia sinensis var. sinensis HOM05D009264 ORTHO05D009202 5.8e-06 54.7 124 45.2
Glyma.20G094000 Glycine max HOM05D011874 ORTHO05D009202 5.8e-06 54.7 130 44.6
Medtr1g086430 Medicago truncatula HOM05D024167 ORTHO05D009202 7.6e-06 54.3 85 43.5
Gohir.D11G112000 Gossypium hirsutum HOM05D008942 ORTHO05D009202 1.0e-05 53.9 112 37.5


User provided reference genes

Program Settings