Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.08G141000 Carya illinoinensis HOM05D005482 ORTHO05D006502 0.0e+00 1174.5 603 100.0
Cfa006872 Carpinus fangiana HOM05D005482 ORTHO05D006502 7.3e-259 897.1 612 77.5
QL06p035944 Quercus lobata HOM05D005482 ORTHO05D006502 9.5e-251 870.2 612 76.1
CiPaw.07G046300 Carya illinoinensis HOM05D005482 ORTHO05D006502 9.6e-243 843.6 566 79.7
Dinv36943 Davidia involucrata HOM05D005482 ORTHO05D006502 1.2e-213 746.9 612 66.2
Prupe.6G203300 Prunus persica HOM05D005482 ORTHO05D006502 1.6e-210 736.5 618 66.8
Thecc.01G089100 Theobroma cacao HOM05D005482 ORTHO05D006502 6.9e-209 731.1 612 64.7
Haze_03890 Corylus avellana HOM05D005482 ORTHO05D006502 2.9e-207 725.7 472 79.7
MD01G1040900 Malus domestica HOM05D005482 ORTHO05D006502 3.8e-207 725.3 616 65.4
MD15G1310400 Malus domestica HOM05D005482 ORTHO05D006502 4.5e-200 701.8 622 63.5
TAR625G0934 Trochodendron aralioides HOM05D005482 ORTHO05D006502 1.4e-198 696.8 610 61.8
Gohir.A12G084900 Gossypium hirsutum HOM05D005482 ORTHO05D006502 3.2e-198 695.7 612 61.9
Gorai.008G093000 Gossypium raimondii HOM05D005482 ORTHO05D006502 7.2e-198 694.5 612 62.1
Gohir.D12G079700 Gossypium hirsutum HOM05D005482 ORTHO05D006502 3.6e-197 692.2 612 61.9
Sed0012268 Sechium edule HOM05D005482 ORTHO05D006502 3.0e-196 689.1 616 62.3
COL.COLO4_27370 Corchorus olitorius HOM05D005482 ORTHO05D006502 4.8e-194 681.8 613 61.0
CSS0020800 Camellia sinensis var. sinensis HOM05D005482 ORTHO05D006502 8.2e-194 681.0 644 60.9
Manes.12G125300 Manihot esculenta HOM05D005482 ORTHO05D006502 3.1e-193 679.1 610 62.5
Duzib264G1263 Durio zibethinus HOM05D005482 ORTHO05D006502 2.2e-191 672.9 615 61.0
Hma1.2p1_0369F.1_g137400 Hydrangea macrophylla HOM05D005482 ORTHO05D006502 5.0e-191 671.8 615 61.8
FAN28G0477 Fragaria x ananassa HOM05D005482 ORTHO05D006502 2.3e-188 662.9 618 59.4
FvH4_1g19490 Fragaria vesca HOM05D005482 ORTHO05D006502 1.5e-187 660.2 615 60.0
FAN23G0007 Fragaria x ananassa HOM05D005482 ORTHO05D006502 2.0e-187 659.8 612 59.3
FAN19G3176 Fragaria x ananassa HOM05D005482 ORTHO05D006502 3.3e-187 659.1 615 60.0
CsaV3_6G044940 Cucumis sativus L. HOM05D005482 ORTHO05D006502 1.1e-185 654.1 621 59.7
RcHm_v2.0_Chr2g0110941 Rosa chinensis HOM05D005482 ORTHO05D006502 1.6e-184 650.2 580 62.8
ClCG01G018310 Citrullus lanatus HOM05D005482 ORTHO05D006502 1.1e-182 644.0 617 60.1
TWI77G0993 Tripterygium wilfordii HOM05D005482 ORTHO05D006502 1.9e-182 643.3 613 59.7
Potri.007G011800 Populus trichocarpa HOM05D005482 ORTHO05D006502 5.5e-182 641.7 606 58.7
Nitab4.5_0000128g0050 Nicotiana tabacum HOM05D005482 ORTHO05D006502 3.0e-180 636.0 618 58.3
TWI74G1080 Tripterygium wilfordii HOM05D005482 ORTHO05D006502 3.0e-180 636.0 613 59.1
Dinv13587 Davidia involucrata HOM05D005482 ORTHO05D006502 2.0e-179 633.3 503 67.4
CSS0030560 Camellia sinensis var. sinensis HOM05D005482 ORTHO05D006502 4.1e-177 625.5 562 63.0
CANSAT01G3178 Cannabis sativa HOM05D005482 ORTHO05D006502 7.0e-177 624.8 684 54.2
Nitab4.5_0007769g0050 Nicotiana tabacum HOM05D005482 ORTHO05D006502 1.7e-175 620.2 613 57.1
Cc07_g13970 Coffea canephora HOM05D005482 ORTHO05D006502 3.8e-175 619.0 617 56.6
Cpa.g.sc55.13 Carica papaya HOM05D005482 ORTHO05D006502 2.6e-171 606.3 615 56.7
vmacro18548 Vaccinium macrocarpon HOM05D005482 ORTHO05D006502 2.6e-171 606.3 635 56.5
Eucgr.H02447 Eucalyptus grandis HOM05D005482 ORTHO05D006502 3.4e-171 605.9 626 56.5
Lj2A532G30 Lonicera japonica HOM05D005482 ORTHO05D006502 7.5e-171 604.7 606 55.6
CAN.G581.10 Capsicum annuum HOM05D005482 ORTHO05D006502 1.3e-170 604.0 612 55.1
PGSC0003DMG400014586 Solanum tuberosum HOM05D005482 ORTHO05D006502 2.2e-170 603.2 615 54.1
MELO3C007709.2 Cucumis melo HOM05D005482 ORTHO05D006502 4.8e-170 602.1 577 59.4
FAN26G3253 Fragaria x ananassa HOM05D005482 ORTHO05D006502 4.1e-169 599.0 581 58.0
Nn1g05603 Nelumbo nucifera HOM05D005482 ORTHO05D006502 2.9e-167 592.8 617 54.8
Solyc05g051370.3 Solanum lycopersicum HOM05D005482 ORTHO05D006502 3.8e-167 592.4 708 49.3
Sabra07G0009200 Salix brachista HOM05D005482 ORTHO05D006502 6.6e-167 591.7 621 55.1
Aa31LG3G16620 Aethionema arabicum HOM05D005482 ORTHO05D006502 1.9e-166 590.1 619 56.9
Sopen05g029760 Solanum pennellii HOM05D005482 ORTHO05D006502 1.2e-165 587.4 708 49.2
THA.LOC104798625 Tarenaya hassleriana HOM05D005482 ORTHO05D006502 1.6e-165 587.0 619 56.5
PGR102G1704 Punica granatum HOM05D005482 ORTHO05D006502 8.0e-165 584.7 616 53.6
SGA_v2.0_scaffold108G30927 Striga asiatica HOM05D005482 ORTHO05D006502 1.8e-164 583.6 639 52.3
CARHR279520 Cardamine hirsuta HOM05D005482 ORTHO05D006502 7.5e-163 578.2 617 54.8
MBI16_g31257_MAGBIO Magnolia biondii HOM05D005482 ORTHO05D006502 2.2e-162 576.6 624 54.2
Rhsim08G0017200 Rhododendron simsii HOM05D005482 ORTHO05D006502 1.4e-161 573.9 625 54.1
MSTRG.23386 Avicennia marina HOM05D005482 ORTHO05D006502 5.4e-161 572.0 619 52.7
Peaxi162Scf01142g00001 Petunia axillaris HOM05D005482 ORTHO05D006502 2.7e-160 569.7 621 52.8
PSO210G6830 Papaver somniferum HOM05D005482 ORTHO05D006502 1.7e-159 567.0 627 53.4
PSO170G0154 Papaver somniferum HOM05D005482 ORTHO05D006502 1.5e-158 563.9 647 52.1
AT5G65540 Arabidopsis thaliana HOM05D005482 ORTHO05D006502 4.3e-158 562.4 621 53.6
Sp2g28640 Schrenkiella parvula HOM05D005482 ORTHO05D006502 4.3e-158 562.4 620 54.0
Aqoxy5G01366 Aquilegia oxysepala HOM05D005482 ORTHO05D006502 9.5e-158 561.2 630 54.3
Atru.chr3.678 Acer truncatum HOM05D005482 ORTHO05D006502 2.8e-157 559.7 624 53.2
Atru.chr3.724 Acer truncatum HOM05D005482 ORTHO05D006502 1.4e-156 557.4 624 53.0
AL8G43140 Arabidopsis lyrata HOM05D005482 ORTHO05D006502 6.8e-156 555.1 616 53.4
Carub.0008s2640 Capsella rubella HOM05D005482 ORTHO05D006502 8.9e-156 554.7 618 53.2
Thhalv10003865m.g Eutrema salsugineum HOM05D005482 ORTHO05D006502 1.5e-155 553.9 616 53.6
arahy.Tifrunner.gnm1.ann1.52LQAS Arachis hypogaea HOM05D005482 ORTHO05D006502 3.2e-153 546.2 671 49.0
arahy.Tifrunner.gnm1.ann1.HVQN9F Arachis hypogaea HOM05D005482 ORTHO05D006502 3.2e-153 546.2 671 49.0
Lalb_Chr16g0381591 Lupinus albus HOM05D005482 ORTHO05D006502 7.0e-153 545.0 620 52.3
Sc03g0000430 Simmondsia chinensis HOM05D005482 ORTHO05D006502 1.6e-152 543.9 616 51.9
C03p60440 Brassica napus HOM05D005482 ORTHO05D006502 6.0e-152 542.0 616 52.6
BolC3t18305H Brassica oleracea HOM05D005482 ORTHO05D006502 6.0e-152 542.0 616 52.6
DCAR_003442 Daucus carota HOM05D005482 ORTHO05D006502 1.5e-150 537.3 620 51.0
Oeu042113.2 Olea europaea HOM05D005482 ORTHO05D006502 2.5e-150 536.6 626 51.0
Sabra15G0071300 Salix brachista HOM05D005482 ORTHO05D006502 5.6e-150 535.4 598 53.2
Ciclev10025202m.g Citrus clementina HOM05D005482 ORTHO05D006502 2.0e-147 526.9 651 49.8
A06p32390 Brassica napus HOM05D005482 ORTHO05D006502 6.4e-146 521.9 624 50.8
BraA06t26164Z Brassica rapa HOM05D005482 ORTHO05D006502 3.2e-145 519.6 624 50.8
Hund16521 Selenicereus undatus HOM05D005482 ORTHO05D006502 2.7e-144 516.5 613 51.1
EL10Ac6g15187 Beta vulgaris HOM05D005482 ORTHO05D006502 1.6e-141 507.3 609 50.6
HanXRQChr12g0368991 Helianthus annuus HOM05D005482 ORTHO05D006502 4.7e-141 505.8 643 49.3
Migut.H02285 Erythranthe guttata HOM05D005482 ORTHO05D006502 9.9e-139 498.0 642 48.0
AUR62017985 Chenopodium quinoa HOM05D005482 ORTHO05D006502 1.6e-136 490.7 611 48.3
Psat3g169840 Pisum sativum HOM05D005482 ORTHO05D006502 2.1e-136 490.3 615 48.9
VMungo1215G0139 Vigna mungo HOM05D005482 ORTHO05D006502 1.4e-132 477.6 619 48.5
Ah.03g139850 Amaranthus hybridus HOM05D005482 ORTHO05D006502 1.8e-132 477.2 601 48.6
Glyma.09G200000 Glycine max HOM05D005482 ORTHO05D006502 8.9e-132 474.9 630 48.3
Lj2g0006088 Lotus japonicus HOM05D005482 ORTHO05D006502 1.5e-131 474.2 649 45.6
SalBow3G1020 Salvia bowleyana HOM05D005482 ORTHO05D006502 6.4e-130 468.8 577 49.6
Ca_25228_v3 Cicer arietinum L. HOM05D005482 ORTHO05D006502 2.1e-128 463.8 615 47.5
Glyma.01G021600 Glycine max HOM05D005482 ORTHO05D006502 8.7e-127 458.4 626 46.5
Lsat_1_v5_gn_3_62981 Lactuca sativa HOM05D005482 ORTHO05D006502 8.7e-127 458.4 630 45.1
Phvul.002G145800 Phaseolus vulgaris HOM05D005482 ORTHO05D006502 1.5e-126 457.6 620 47.9
Actinidia24562 Actinidia chinensis HOM05D005482 ORTHO05D006502 1.7e-122 444.1 410 60.0
BcaC01g02786 Brassica carinata HOM05D005482 ORTHO05D006502 7.9e-120 435.3 649 45.5
Medtr5g031750 Medicago truncatula HOM05D005482 ORTHO05D006502 3.9e-119 433.0 611 46.0
HPP92_017563 Vanilla planifolia HOM05D005482 ORTHO05D006502 3.3e-110 403.3 614 44.8
ECA246G0291 Erigeron canadensis HOM05D005482 ORTHO05D006502 3.1e-108 396.7 460 50.0
Hma1.2p1_0369F.1_g137390 Hydrangea macrophylla HOM05D005482 ORTHO05D006502 2.5e-102 377.1 359 57.9
Oeu017109.1 Olea europaea HOM05D005482 ORTHO05D006502 1.2e-99 368.2 419 50.8
unitig_736.g22591 Utricularia gibba HOM05D005482 ORTHO05D006502 2.2e-98 364.0 568 42.3
GSVIVG01002660001 Vitis vinifera HOM05D005482 ORTHO05D006502 5.9e-83 312.8 232 73.3
Zm00001eb061260 Zea mays HOM05D005482 ORTHO05D006502 2.2e-82 310.8 533 40.7
Os03g0802300 Oryza sativa ssp. japonica HOM05D005482 ORTHO05D006502 4.7e-80 303.1 535 40.2
GSVIVG01002523001 Vitis vinifera HOM05D005482 ORTHO05D006502 1.5e-78 298.1 303 55.1
TPR.G36831 Trifolium pratense HOM05D005482 ORTHO05D006502 5.7e-70 269.6 451 39.9
ATR0767G089 Amborella trichopoda HOM05D005482 ORTHO05D006502 9.8e-54 215.7 279 44.8
Haze_03887 Corylus avellana HOM05D005482 ORTHO05D006502 9.5e-49 199.1 139 74.8
Pp3c20_16050 Physcomitrium patens HOM05D005482 ORTHO05D006502 3.6e-48 197.2 527 31.7
TAR381G1343 Trochodendron aralioides HOM05D005482 ORTHO05D006502 8.0e-48 196.1 277 50.9
TPR.G7258 Trifolium pratense HOM05D005482 ORTHO05D006502 3.0e-47 194.1 287 43.9
Solyc11g016980.3 Solanum lycopersicum HOM05D005482 ORTHO05D006502 4.0e-47 193.7 184 54.9
CiPaw.01G172300 Carya illinoinensis HOM05D005482 ORTHO05D006502 3.9e-42 177.2 168 61.3
CiPaw.10G105100 Carya illinoinensis HOM05D005482 ORTHO05D006502 1.0e-39 169.1 113 77.0
Solyc01g056590.2 Solanum lycopersicum HOM05D005482 ORTHO05D006502 1.7e-34 151.8 131 58.0
BolC3t18285H Brassica oleracea HOM05D005482 ORTHO05D006502 3.0e-34 151.0 187 52.4
Actinidia28819 Actinidia chinensis HOM05D000138 ORTHO05D000078 3.3e-33 147.5 493 29.8
CDE07G0659 Ceratophyllum demersum HOM05D005482 ORTHO05D006502 3.6e-32 144.1 198 42.4
SMO203G0252 Selaginella moellendorffii HOM05D005482 ORTHO05D006502 5.8e-30 136.7 597 28.0
Oeu017110.1 Olea europaea HOM05D005482 ORTHO05D006502 7.5e-30 136.3 151 52.3
C03p60240 Brassica napus HOM05D005482 ORTHO05D006502 3.2e-28 131.0 187 48.7
CDE07G2034 Ceratophyllum demersum HOM05D005482 ORTHO05D006502 3.9e-26 124.0 104 64.4
AagrBONN_evm.TU.Sc2ySwM_117.475 Anthoceros agrestis HOM05D005482 ORTHO05D006502 5.1e-26 123.6 499 26.1
ECA246G4867 Erigeron canadensis HOM05D005482 ORTHO05D006502 9.5e-25 119.4 138 52.2
RcHm_v2.0_Chr2g0110871 Rosa chinensis HOM05D005482 ORTHO05D006502 4.7e-24 117.1 109 58.7
CiPaw.03G215800 Carya illinoinensis HOM05D005482 ORTHO05D006502 6.2e-24 116.7 76 75.0
BcaC01g02797 Brassica carinata HOM05D005482 ORTHO05D006502 1.1e-23 115.9 129 50.4
Mapoly0105s0033 Marchantia polymorpha HOM05D005482 ORTHO05D006502 2.9e-21 107.8 589 22.6
TAR375G0200 Trochodendron aralioides HOM05D005482 ORTHO05D006502 1.7e-18 98.6 91 67.0
HanXRQChr04g0112001 Helianthus annuus HOM05D005482 ORTHO05D006502 3.1e-15 87.8 79 64.6
CDE07G1819 Ceratophyllum demersum HOM05D005482 ORTHO05D006502 5.2e-15 87.0 80 48.8
ATR0767G001 Amborella trichopoda HOM05D005482 ORTHO05D006502 4.9e-13 80.5 147 39.5
CDE07G1566 Ceratophyllum demersum HOM05D005482 ORTHO05D006502 4.9e-13 80.5 153 41.2
BcaB04g20020 Brassica carinata HOM05D005482 ORTHO05D006502 1.1e-12 79.3 67 53.7
Sabra15G0079600 Salix brachista HOM05D005482 ORTHO05D006502 2.7e-11 74.7 76 55.3
Solyc02g062815.1 Solanum lycopersicum HOM05D005482 ORTHO05D006502 3.1e-07 61.2 49 55.1
Glyma.11G112400 Glycine max HOM05D005482 ORTHO05D006502 7.6e-06 56.6 58 53.4


User provided reference genes

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