Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.08G137200 Carya illinoinensis HOM05D005654 ORTHO05D006438 1.6e-92 342.8 181 100.0
Haze_03832 Corylus avellana HOM05D005654 ORTHO05D006438 1.8e-67 259.6 181 77.9
QL06p034798 Quercus lobata HOM05D005654 ORTHO05D006438 2.8e-65 252.3 181 79.0
QL10p007390 Quercus lobata HOM05D005654 ORTHO05D006438 2.8e-65 252.3 181 79.0
QL08p063081 Quercus lobata HOM05D005654 ORTHO05D006438 3.8e-62 241.9 184 74.5
GSVIVG01018856001 Vitis vinifera HOM05D005654 ORTHO05D006438 1.7e-57 226.5 184 71.2
CSS0048601 Camellia sinensis var. sinensis HOM05D005654 ORTHO05D006438 2.8e-57 225.7 183 69.9
COL.COLO4_21992 Corchorus olitorius HOM05D005654 ORTHO05D006438 2.4e-56 222.6 185 67.6
Manes.02G099200 Manihot esculenta HOM05D005654 ORTHO05D006438 7.0e-56 221.1 188 68.6
Lj3g0016616 Lotus japonicus HOM05D005654 ORTHO05D006438 9.1e-56 220.7 184 70.1
RcHm_v2.0_Chr6g0277811 Rosa chinensis HOM05D005654 ORTHO05D006438 9.1e-56 220.7 187 71.7
ClCG09G019610 Citrullus lanatus HOM05D005654 ORTHO05D006438 2.0e-55 219.5 184 66.8
Hma1.2p1_1114F.1_g258780 Hydrangea macrophylla HOM05D005654 ORTHO05D006438 2.0e-55 219.5 185 67.6
CANSAT01G3286 Cannabis sativa HOM05D005654 ORTHO05D006438 2.7e-55 219.2 181 67.4
FAN07G1349 Fragaria x ananassa HOM05D005654 ORTHO05D006438 3.5e-55 218.8 187 70.6
Thecc.01G026300 Theobroma cacao HOM05D005654 ORTHO05D006438 3.5e-55 218.8 185 67.0
Cc07_g10180 Coffea canephora HOM05D005654 ORTHO05D006438 7.7e-55 217.6 192 67.7
Migut.H02503 Erythranthe guttata HOM05D005654 ORTHO05D006438 1.3e-54 216.9 178 68.5
MELO3C005244.2 Cucumis melo HOM05D005654 ORTHO05D006438 2.2e-54 216.1 183 66.1
FAN17G0825 Fragaria x ananassa HOM05D005654 ORTHO05D006438 3.8e-54 215.3 187 70.1
FAN22G0080 Fragaria x ananassa HOM05D005654 ORTHO05D006438 1.1e-53 213.8 187 69.5
CsaV3_5G027780 Cucumis sativus L. HOM05D005654 ORTHO05D006438 1.9e-53 213.0 183 65.6
FvH4_2g15150 Fragaria vesca HOM05D005654 ORTHO05D006438 1.9e-53 213.0 182 68.1
Sed0005955 Sechium edule HOM05D005654 ORTHO05D006438 1.9e-53 213.0 179 66.5
THA.LOC104819191 Tarenaya hassleriana HOM05D005654 ORTHO05D006438 1.9e-53 213.0 184 64.7
Nitab4.5_0002707g0030 Nicotiana tabacum HOM05D005654 ORTHO05D006438 3.2e-53 212.2 190 66.8
PGSC0003DMG400025306 Solanum tuberosum HOM05D005654 ORTHO05D006438 3.2e-53 212.2 189 64.0
Dinv33576 Davidia involucrata HOM05D005654 ORTHO05D006438 4.2e-53 211.8 180 66.1
Lj5g0021075 Lotus japonicus HOM05D005654 ORTHO05D006438 4.2e-53 211.8 183 67.8
Solyc04g008800.3 Solanum lycopersicum HOM05D005654 ORTHO05D006438 4.2e-53 211.8 189 65.1
Sopen04g003980 Solanum pennellii HOM05D005654 ORTHO05D006438 4.2e-53 211.8 189 65.1
Gohir.A11G179400 Gossypium hirsutum HOM05D005654 ORTHO05D006438 5.5e-53 211.5 185 63.8
Nitab4.5_0007445g0010 Nicotiana tabacum HOM05D005654 ORTHO05D006438 5.5e-53 211.5 189 65.6
Actinidia26105 Actinidia chinensis HOM05D005654 ORTHO05D006438 7.2e-53 211.1 182 67.0
Nn1g05784 Nelumbo nucifera HOM05D005654 ORTHO05D006438 1.2e-52 210.3 180 66.7
Glyma.13G002400 Glycine max HOM05D005654 ORTHO05D006438 1.6e-52 209.9 187 67.9
Eucgr.H02778 Eucalyptus grandis HOM05D005654 ORTHO05D006438 2.7e-52 209.1 184 67.4
Thhalv10010748m.g Eutrema salsugineum HOM05D005654 ORTHO05D006438 3.6e-52 208.8 186 63.4
TWI60G0108 Tripterygium wilfordii HOM05D005654 ORTHO05D006438 4.7e-52 208.4 190 65.8
Manes.01G140500 Manihot esculenta HOM05D005654 ORTHO05D006438 6.1e-52 208.0 193 65.8
Gohir.D11G187100 Gossypium hirsutum HOM05D005654 ORTHO05D006438 8.0e-52 207.6 186 62.9
Prupe.8G013400 Prunus persica HOM05D005654 ORTHO05D006438 8.0e-52 207.6 187 67.9
MSTRG.23266 Avicennia marina HOM05D005654 ORTHO05D006438 1.4e-51 206.8 183 65.6
FvH4_4g16440 Fragaria vesca HOM05D005654 ORTHO05D006438 1.4e-51 206.8 187 68.4
FAN12G4326 Fragaria x ananassa HOM05D005654 ORTHO05D006438 1.4e-51 206.8 187 68.4
Gorai.007G199000 Gossypium raimondii HOM05D005654 ORTHO05D006438 1.4e-51 206.8 186 62.9
Lj2A460T79 Lonicera japonica HOM05D005654 ORTHO05D006438 2.3e-51 206.1 182 64.8
Peaxi162Scf00329g00119 Petunia axillaris HOM05D005654 ORTHO05D006438 4.0e-51 205.3 185 65.4
CAN.G419.13 Capsicum annuum HOM05D005654 ORTHO05D006438 6.8e-51 204.5 191 63.9
Lalb_Chr06g0172541 Lupinus albus HOM05D005654 ORTHO05D006438 8.8e-51 204.1 190 62.1
Sp5g11200 Schrenkiella parvula HOM05D005654 ORTHO05D006438 8.8e-51 204.1 186 63.4
Glyma.16G220800 Glycine max HOM05D005654 ORTHO05D006438 2.6e-50 202.6 182 66.5
MD05G1010700 Malus domestica HOM05D005654 ORTHO05D006438 2.6e-50 202.6 188 66.0
TAR381G0206 Trochodendron aralioides HOM05D005654 ORTHO05D006438 2.6e-50 202.6 186 65.6
AT3G51010 Arabidopsis thaliana HOM05D005654 ORTHO05D006438 3.4e-50 202.2 187 62.0
Glyma.20G066700 Glycine max HOM05D005654 ORTHO05D006438 4.4e-50 201.8 187 66.3
Phvul.010G058900 Phaseolus vulgaris HOM05D005654 ORTHO05D006438 5.7e-50 201.4 180 67.2
AL5G31430 Arabidopsis lyrata HOM05D005654 ORTHO05D006438 9.8e-50 200.7 187 61.5
Carub.0005s1741 Capsella rubella HOM05D005654 ORTHO05D006438 2.2e-49 199.5 187 59.9
Ca_14022_v3 Cicer arietinum L. HOM05D005654 ORTHO05D006438 2.2e-49 199.5 181 64.1
SalBow8G3171 Salvia bowleyana HOM05D005654 ORTHO05D006438 2.8e-49 199.1 180 62.8
Sabra07G0015400 Salix brachista HOM05D005654 ORTHO05D006438 8.3e-49 197.6 191 64.4
PGR119G1083 Punica granatum HOM05D005654 ORTHO05D006438 1.4e-48 196.8 193 61.7
A09p44110 Brassica napus HOM05D000363 ORTHO05D006438 3.1e-48 195.7 181 61.9
BcaNung00403 Brassica carinata HOM05D005654 ORTHO05D006438 4.1e-48 195.3 183 60.1
BraA09t39870Z Brassica rapa HOM05D005654 ORTHO05D006438 4.1e-48 195.3 182 61.5
VMungo0331G0515 Vigna mungo HOM05D005654 ORTHO05D006438 4.1e-48 195.3 176 66.5
Aa31LG4G19130 Aethionema arabicum HOM05D005654 ORTHO05D006438 1.6e-47 193.4 185 59.5
Lsat_1_v5_gn_9_115780 Lactuca sativa HOM05D005654 ORTHO05D006438 1.6e-47 193.4 187 63.1
MD10G1009400 Malus domestica HOM05D005654 ORTHO05D006438 2.0e-47 193.0 182 63.2
BcaC06g33063 Brassica carinata HOM05D005654 ORTHO05D006438 2.3e-46 189.5 183 60.7
TPR.G24134 Trifolium pratense HOM05D005654 ORTHO05D006438 2.3e-46 189.5 180 63.3
BcaB01g00554 Brassica carinata HOM05D005654 ORTHO05D006438 2.9e-46 189.1 185 59.5
BcaC07g39579 Brassica carinata HOM05D005654 ORTHO05D006438 3.8e-46 188.7 182 61.5
A03p48070 Brassica napus HOM05D000363 ORTHO05D005000 3.8e-46 188.7 182 62.1
C08p26310 Brassica napus HOM05D005654 ORTHO05D006438 3.8e-46 188.7 182 61.5
BraA03t13914Z Brassica rapa HOM05D000363 ORTHO05D005000 5.0e-46 188.3 182 62.1
Oeu021744.2 Olea europaea HOM05D005654 ORTHO05D006438 5.0e-46 188.3 235 52.8
arahy.Tifrunner.gnm1.ann1.IV76VY Arachis hypogaea HOM05D005654 ORTHO05D006438 8.6e-46 187.6 204 56.9
C07p46090 Brassica napus HOM05D000363 ORTHO05D005000 8.6e-46 187.6 182 61.0
BolC7t45125H Brassica oleracea HOM05D000363 ORTHO05D005000 8.6e-46 187.6 182 61.0
BolC8t50249H Brassica oleracea HOM05D005654 ORTHO05D006438 1.1e-45 187.2 182 61.0
PSO170G2173 Papaver somniferum HOM05D005654 ORTHO05D006438 5.5e-45 184.9 186 60.8
ECA248G0981 Erigeron canadensis HOM05D005654 ORTHO05D006438 1.6e-44 183.3 186 61.3
Medtr8g077440 Medicago truncatula HOM05D005654 ORTHO05D006438 2.1e-44 183.0 183 61.2
Sc18g0007030 Simmondsia chinensis HOM05D005654 ORTHO05D006438 8.0e-44 181.0 195 60.0
PSO339G4156 Papaver somniferum HOM05D005654 ORTHO05D006438 3.0e-43 179.1 186 59.7
PSO528G0264 Papaver somniferum HOM05D005654 ORTHO05D006438 3.0e-43 179.1 186 59.1
Dinv33575 Davidia involucrata HOM05D005654 ORTHO05D006438 4.0e-43 178.7 151 68.9
Oeu035320.1 Olea europaea HOM05D005654 ORTHO05D006438 6.8e-43 177.9 174 62.1
MBI01_g45163_MAGBIO Magnolia biondii HOM05D005654 ORTHO05D006438 2.6e-42 176.0 195 57.4
Lj4A211T64 Lonicera japonica HOM05D005654 ORTHO05D006438 3.7e-41 172.2 197 55.8
Aqoxy6G01210 Aquilegia oxysepala HOM05D005654 ORTHO05D006438 6.3e-41 171.4 186 56.5
CDE04G0601 Ceratophyllum demersum HOM05D005654 ORTHO05D006438 8.3e-41 171.0 190 56.8
arahy.Tifrunner.gnm1.ann1.I9PPQ0 Arachis hypogaea HOM05D005654 ORTHO05D006438 3.5e-39 165.6 190 56.8
HanXRQChr10g0278901 Helianthus annuus HOM05D005654 ORTHO05D006438 4.5e-39 165.2 176 57.4
Hund00373 Selenicereus undatus HOM05D005654 ORTHO05D006438 4.5e-39 165.2 197 53.8
CDE12G0226 Ceratophyllum demersum HOM05D005654 ORTHO05D006438 5.9e-39 164.9 190 55.8
SGA_v2.0_scaffold9G04932 Striga asiatica HOM05D005654 ORTHO05D006438 1.0e-38 164.1 125 72.0
Ciclev10003765m.g Citrus clementina HOM05D005654 ORTHO05D006438 4.3e-37 158.7 132 65.9
AUR62027117 Chenopodium quinoa HOM05D005654 ORTHO05D006438 6.1e-36 154.8 195 52.8
AUR62012893 Chenopodium quinoa HOM05D005654 ORTHO05D006438 1.5e-34 150.2 196 51.5
Cfa006918 Carpinus fangiana HOM05D005654 ORTHO05D006438 2.6e-34 149.4 96 85.4
Sed0001903 Sechium edule HOM05D005654 ORTHO05D006438 5.8e-34 148.3 181 55.2
EL10Ac9g22080 Beta vulgaris HOM05D005654 ORTHO05D006438 2.2e-33 146.4 253 43.1
FAN20G0529 Fragaria x ananassa HOM05D005654 ORTHO05D006438 2.9e-33 146.0 133 66.9
HPP92_013005 Vanilla planifolia HOM05D005654 ORTHO05D006438 9.2e-32 141.0 186 49.5
ATR0605G129 Amborella trichopoda HOM05D005654 ORTHO05D006438 3.5e-31 139.0 181 51.9
SGA_v2.0_scaffold280G46859 Striga asiatica HOM05D005654 ORTHO05D006438 3.9e-30 135.6 127 59.1
DCAR_025978 Daucus carota HOM05D005654 ORTHO05D006438 2.5e-29 132.9 183 50.8
Zm00001eb265250 Zea mays HOM05D005654 ORTHO05D006438 2.5e-29 132.9 127 62.2
Ah.08g209860 Amaranthus hybridus HOM05D005654 ORTHO05D006438 4.3e-29 132.1 141 54.6
Nn5g29728 Nelumbo nucifera HOM05D005654 ORTHO05D006438 1.6e-28 130.2 127 55.9
Rhsim08G0123600 Rhododendron simsii HOM05D005654 ORTHO05D006438 3.6e-28 129.0 182 49.5
Cpa.g.sc217.22 Carica papaya HOM05D005654 ORTHO05D006438 8.0e-28 127.9 159 48.4
Potri.007G018300 Populus trichocarpa HOM05D005654 ORTHO05D006438 8.0e-28 127.9 135 56.3
Psat0s439g0080 Pisum sativum HOM05D005654 ORTHO05D006438 2.3e-27 126.3 126 56.3
FAN24G1434 Fragaria x ananassa HOM05D005654 ORTHO05D006438 3.1e-27 125.9 160 48.8
Os05g0126200 Oryza sativa ssp. japonica HOM05D005654 ORTHO05D006438 4.4e-26 122.1 124 58.9
Psat2g190960 Pisum sativum HOM05D005654 ORTHO05D006438 5.8e-26 121.7 123 53.7
CARHR160580 Cardamine hirsuta HOM05D005654 ORTHO05D006438 4.9e-25 118.6 94 73.4
TWI09G1445 Tripterygium wilfordii HOM05D005654 ORTHO05D006438 6.4e-25 118.2 89 76.4
Zm00001eb414250 Zea mays HOM05D005654 ORTHO05D006438 4.0e-19 99.0 96 62.5
unitig_747.g21954 Utricularia gibba HOM05D005654 ORTHO05D006438 2.6e-18 96.3 108 47.2
SEGI_21166 Sequoiadendron giganteum HOM05D005654 ORTHO05D006438 3.7e-17 92.4 75 60.0
Zm00001eb355020 Zea mays HOM05D005654 ORTHO05D006438 1.0e-14 84.3 129 47.3
CARHR160590 Cardamine hirsuta HOM05D005654 ORTHO05D006438 1.5e-13 80.5 93 45.2
FAN15G1271 Fragaria x ananassa HOM05D005654 ORTHO05D006438 1.5e-13 80.5 64 76.6
SHI03481 Sapria himalayana HOM05D005654 ORTHO05D006438 1.9e-13 80.1 106 49.1
Lalb_Chr02g0154671 Lupinus albus HOM05D005654 ORTHO05D006438 2.1e-12 76.6 84 50.0
Zm00001eb078300 Zea mays HOM05D000349 ORTHO05D010734 2.8e-12 76.3 81 55.6
Zm00001eb309330 Zea mays HOM05D000349 ORTHO05D006438 2.8e-12 76.3 81 55.6
Zm00001eb035810 Zea mays HOM05D005654 ORTHO05D006438 3.6e-12 75.9 81 58.0
MBI01_g11791_MAGBIO Magnolia biondii HOM05D005654 ORTHO05D006438 6.8e-11 71.6 141 41.8
SHI05467 Sapria himalayana HOM05D005654 ORTHO05D006438 8.9e-11 71.2 68 55.9
SHI06070 Sapria himalayana HOM05D005654 ORTHO05D006438 1.1e-08 64.3 85 49.4
Zm00001eb093520 Zea mays HOM05D005654 ORTHO05D006438 4.2e-08 62.4 62 56.5
FAN24G2610 Fragaria x ananassa HOM05D005654 ORTHO05D006438 7.8e-07 58.2 43 81.4
CAN.G419.11 Capsicum annuum HOM05D005654 ORTHO05D006438 3.9e-06 55.8 54 66.7


User provided reference genes

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