Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.08G130500 Carya illinoinensis HOM05D005052 ORTHO05D006226 6.4e-263 910.2 462 100.0
CiPaw.07G061100 Carya illinoinensis HOM05D005052 ORTHO05D006226 2.1e-229 798.9 462 87.9
QL06p051082 Quercus lobata HOM05D005052 ORTHO05D006226 1.0e-220 770.0 461 85.9
Cfa007001 Carpinus fangiana HOM05D005052 ORTHO05D006226 4.8e-218 761.1 462 84.6
Haze_03731 Corylus avellana HOM05D005052 ORTHO05D006226 2.6e-216 755.4 476 82.1
Prupe.7G171600 Prunus persica HOM05D005052 ORTHO05D006226 6.1e-213 744.2 462 81.6
MD15G1242600 Malus domestica HOM05D005052 ORTHO05D006226 1.0e-207 726.9 461 80.5
Dinv40116 Davidia involucrata HOM05D005052 ORTHO05D006226 2.5e-206 722.2 463 80.1
GSVIVG01018732001 Vitis vinifera HOM05D005052 ORTHO05D006226 1.6e-205 719.5 462 80.1
Cpa.g.sc6.286 Carica papaya HOM05D005052 ORTHO05D006226 1.0e-204 716.8 462 80.3
RcHm_v2.0_Chr2g0099021 Rosa chinensis HOM05D005052 ORTHO05D006226 1.0e-204 716.8 462 79.2
TWI53G1960 Tripterygium wilfordii HOM05D005052 ORTHO05D006226 3.3e-203 711.8 433 84.5
CANSAT25G2560 Cannabis sativa HOM05D005052 ORTHO05D006226 4.3e-203 711.4 462 79.0
Eucgr.J02467 Eucalyptus grandis HOM05D005052 ORTHO05D006226 4.3e-203 711.4 463 79.9
COL.COLO4_22462 Corchorus olitorius HOM05D005052 ORTHO05D006226 1.1e-201 706.8 465 78.7
CsaV3_3G000670 Cucumis sativus L. HOM05D005052 ORTHO05D006226 3.1e-201 705.3 462 78.4
Atru.chr3.855 Acer truncatum HOM05D005052 ORTHO05D006226 6.9e-201 704.1 436 82.1
MELO3C013755.2 Cucumis melo HOM05D005052 ORTHO05D006226 3.4e-200 701.8 462 78.4
Duzib147G0491 Durio zibethinus HOM05D005052 ORTHO05D006226 3.4e-200 701.8 465 77.6
VMungo1215G2918 Vigna mungo HOM05D005052 ORTHO05D006226 3.4e-200 701.8 391 88.5
ClCG10G000590 Citrullus lanatus HOM05D005052 ORTHO05D006226 7.7e-200 700.7 423 83.5
Gohir.D12G058900 Gossypium hirsutum HOM05D005052 ORTHO05D006226 7.7e-200 700.7 465 77.8
Actinidia22954 Actinidia chinensis HOM05D005052 ORTHO05D006226 3.8e-199 698.4 378 91.8
Glyma.11G078700 Glycine max HOM05D005052 ORTHO05D006226 5.0e-199 698.0 391 87.5
Gohir.A12G058900 Gossypium hirsutum HOM05D005052 ORTHO05D006226 8.5e-199 697.2 465 77.6
TWI09G1579 Tripterygium wilfordii HOM05D005052 ORTHO05D006226 1.4e-198 696.4 457 81.0
Thecc.01G014600 Theobroma cacao HOM05D005052 ORTHO05D006226 2.5e-198 695.7 465 77.4
Nn5g28565 Nelumbo nucifera HOM05D005052 ORTHO05D006226 5.5e-198 694.5 463 78.2
Glyma.01G164300 Glycine max HOM05D005052 ORTHO05D006226 9.4e-198 693.7 391 87.5
Lalb_Chr05g0212261 Lupinus albus HOM05D005052 ORTHO05D006226 9.4e-198 693.7 384 89.3
Lalb_Chr09g0321611 Lupinus albus HOM05D005052 ORTHO05D006226 2.7e-197 692.2 391 87.7
FAN28G0876 Fragaria x ananassa HOM05D005052 ORTHO05D006226 3.6e-197 691.8 462 76.8
Gorai.008G062200 Gossypium raimondii HOM05D005052 ORTHO05D006226 4.7e-197 691.4 466 77.3
Phvul.002G106700 Phaseolus vulgaris HOM05D005052 ORTHO05D006226 4.7e-197 691.4 392 87.2
arahy.Tifrunner.gnm1.ann1.1KVD1S Arachis hypogaea HOM05D005052 ORTHO05D006226 6.1e-197 691.0 464 78.9
arahy.Tifrunner.gnm1.ann1.PYN71E Arachis hypogaea HOM05D005052 ORTHO05D006226 6.1e-197 691.0 464 78.9
FvH4_1g11430 Fragaria vesca HOM05D005052 ORTHO05D006226 6.1e-197 691.0 462 76.6
Ca_24920_v3 Cicer arietinum L. HOM05D005052 ORTHO05D006226 7.9e-197 690.6 386 88.6
Lj2g0011110 Lotus japonicus HOM05D005052 ORTHO05D006226 2.3e-196 689.1 456 77.9
Sabra05G0090900 Salix brachista HOM05D005052 ORTHO05D006226 2.3e-196 689.1 464 77.8
FAN19G0738 Fragaria x ananassa HOM05D005052 ORTHO05D006226 3.0e-196 688.7 462 76.8
PSO541G6199 Papaver somniferum HOM05D005052 ORTHO05D006226 5.1e-196 688.0 436 80.3
Sed0003793 Sechium edule HOM05D005052 ORTHO05D006226 5.1e-196 688.0 384 87.8
vmacro18426 Vaccinium macrocarpon HOM05D005052 ORTHO05D006226 6.7e-196 687.6 456 77.6
Potri.005G110900 Populus trichocarpa HOM05D005052 ORTHO05D006226 8.8e-196 687.2 463 77.5
PSO675G6089 Papaver somniferum HOM05D005052 ORTHO05D006226 1.3e-194 683.3 436 79.8
TAR381G1626 Trochodendron aralioides HOM05D005052 ORTHO05D006226 1.3e-194 683.3 463 77.8
FAN23G2381 Fragaria x ananassa HOM05D005052 ORTHO05D006226 1.7e-194 682.9 462 76.6
FAN26G3360 Fragaria x ananassa HOM05D005052 ORTHO05D006226 6.3e-194 681.0 475 74.7
Medtr5g022580 Medicago truncatula HOM05D005052 ORTHO05D006226 1.4e-193 679.9 466 76.2
Psat2g153160 Pisum sativum HOM05D005052 ORTHO05D006226 1.4e-193 679.9 429 80.2
Nitab4.5_0001892g0080 Nicotiana tabacum HOM05D005052 ORTHO05D006226 2.4e-193 679.1 424 80.0
Nitab4.5_0008943g0020 Nicotiana tabacum HOM05D005052 ORTHO05D006226 2.4e-193 679.1 424 80.0
Oeu048477.1 Olea europaea HOM05D005052 ORTHO05D006226 4.1e-193 678.3 386 86.5
THA.LOC104821339 Tarenaya hassleriana HOM05D005052 ORTHO05D006226 4.1e-193 678.3 459 75.8
Cc07_g11060 Coffea canephora HOM05D005052 ORTHO05D006226 5.3e-193 677.9 417 81.8
Gorai.007G192400 Gossypium raimondii HOM05D005052 ORTHO05D006226 7.0e-193 677.6 467 76.4
HanXRQChr13g0424561 Helianthus annuus HOM05D005052 ORTHO05D006226 9.1e-193 677.2 368 89.9
Rhsim08G0032100 Rhododendron simsii HOM05D005052 ORTHO05D006226 2.6e-192 675.6 383 85.9
Sc03g0003700 Simmondsia chinensis HOM05D005052 ORTHO05D006226 2.6e-192 675.6 463 76.2
CAN.G1274.31 Capsicum annuum HOM05D005052 ORTHO05D006226 3.5e-192 675.2 393 84.5
vmacro22193 Vaccinium macrocarpon HOM05D005052 ORTHO05D006226 5.9e-192 674.5 519 69.4
ECA240G3065 Erigeron canadensis HOM05D005052 ORTHO05D006226 7.7e-192 674.1 403 84.1
Nn1g06262 Nelumbo nucifera HOM05D005052 ORTHO05D006226 7.7e-192 674.1 461 76.6
AL8G45470 Arabidopsis lyrata HOM05D005052 ORTHO05D006226 1.0e-191 673.7 425 78.4
AT5G66120 Arabidopsis thaliana HOM05D005052 ORTHO05D006226 1.0e-191 673.7 428 79.0
SGA_v2.0_scaffold94G28549 Striga asiatica HOM05D005052 ORTHO05D006226 1.7e-191 672.9 382 86.6
PGR102G0465 Punica granatum HOM05D005052 ORTHO05D006226 2.9e-191 672.2 463 75.6
BcaC04g23113 Brassica carinata HOM05D005052 ORTHO05D006226 3.8e-191 671.8 457 75.9
C09p12030 Brassica napus HOM05D005052 ORTHO05D006226 3.8e-191 671.8 457 75.9
CARHR281630 Cardamine hirsuta HOM05D005052 ORTHO05D006226 3.8e-191 671.8 424 79.2
Sp2g30570 Schrenkiella parvula HOM05D005052 ORTHO05D006226 3.8e-191 671.8 432 79.4
TPR.G10542 Trifolium pratense HOM05D005052 ORTHO05D006226 3.8e-191 671.8 425 79.8
DCAR_022909 Daucus carota HOM05D005052 ORTHO05D006226 8.5e-191 670.6 393 85.2
BolC9t54093H Brassica oleracea HOM05D005052 ORTHO05D006226 1.1e-190 670.2 407 81.6
Migut.C00533 Erythranthe guttata HOM05D005052 ORTHO05D006226 1.9e-190 669.5 389 84.6
Lj4A222T51 Lonicera japonica HOM05D005052 ORTHO05D006226 2.5e-190 669.1 431 80.0
Peaxi162Scf00328g00523 Petunia axillaris HOM05D005052 ORTHO05D006226 7.2e-190 667.5 384 84.9
A09p10150 Brassica napus HOM05D005052 ORTHO05D006226 1.2e-189 666.8 424 78.8
Thhalv10004219m.g Eutrema salsugineum HOM05D005052 ORTHO05D006226 1.2e-189 666.8 458 75.8
SalBow3G4284 Salvia bowleyana HOM05D005052 ORTHO05D006226 1.2e-189 666.8 392 83.4
BcaB04g20124 Brassica carinata HOM05D005052 ORTHO05D006226 1.6e-189 666.4 388 84.3
BraA09t36659Z Brassica rapa HOM05D005052 ORTHO05D006226 2.1e-189 666.0 414 80.4
Sopen02g028370 Solanum pennellii HOM05D005052 ORTHO05D006226 8.0e-189 664.1 386 83.9
Carub.0008s2837 Capsella rubella HOM05D005052 ORTHO05D006226 1.0e-188 663.7 425 78.4
MBI05_g23388_MAGBIO Magnolia biondii HOM05D005052 ORTHO05D006226 1.4e-188 663.3 457 75.3
Solyc02g083590.3 Solanum lycopersicum HOM05D005052 ORTHO05D006226 2.3e-188 662.5 386 83.9
Gohir.D11G180500 Gossypium hirsutum HOM05D005052 ORTHO05D006226 4.4e-187 658.3 378 86.8
ATR0712G043 Amborella trichopoda HOM05D005052 ORTHO05D006226 2.2e-186 656.0 422 78.9
MSTRG.2728 Avicennia marina HOM05D005052 ORTHO05D006226 2.2e-186 656.0 381 83.7
PGSC0003DMG400003582 Solanum tuberosum HOM05D005052 ORTHO05D006226 2.2e-186 656.0 413 79.4
Aa31LG1G14600 Aethionema arabicum HOM05D005052 ORTHO05D006226 2.8e-186 655.6 372 85.5
AUR62029500 Chenopodium quinoa HOM05D005052 ORTHO05D006226 8.2e-186 654.1 462 73.8
Hund16503 Selenicereus undatus HOM05D005052 ORTHO05D006226 8.2e-186 654.1 462 74.0
AUR62003338 Chenopodium quinoa HOM05D005052 ORTHO05D006226 1.2e-184 650.2 468 72.9
Os09g0539100 Oryza sativa ssp. japonica HOM05D005052 ORTHO05D006226 1.2e-184 650.2 385 84.2
Gohir.A11G173500 Gossypium hirsutum HOM05D005052 ORTHO05D006226 4.5e-184 648.3 446 76.9
Aqoxy4G02022 Aquilegia oxysepala HOM05D005052 ORTHO05D006226 5.9e-184 647.9 366 86.3
Zm00001eb103800 Zea mays HOM05D005052 ORTHO05D006226 4.7e-181 638.3 365 85.5
HPP92_025914 Vanilla planifolia HOM05D005052 ORTHO05D006226 3.4e-179 632.1 405 76.3
HPP92_025909 Vanilla planifolia HOM05D005052 ORTHO05D006226 4.8e-178 628.2 405 76.0
CSS0012363 Camellia sinensis var. sinensis HOM05D005052 ORTHO05D006226 1.3e-175 620.2 328 93.3
Ciclev10025711m.g Citrus clementina HOM05D005052 ORTHO05D006226 2.9e-175 619.0 461 71.8
Pp3c13_24150 Physcomitrium patens HOM05D005052 ORTHO05D006226 1.7e-170 603.2 441 68.5
AagrBONN_evm.TU.Sc2ySwM_340.387 Anthoceros agrestis HOM05D005052 ORTHO05D006226 1.3e-167 593.6 385 73.8
SMO228G0049 Selaginella moellendorffii HOM05D005052 ORTHO05D006226 2.3e-167 592.8 363 78.5
Mapoly0031s0094 Marchantia polymorpha HOM05D005052 ORTHO05D006226 6.6e-167 591.3 430 69.3
Actinidia28717 Actinidia chinensis HOM05D005052 ORTHO05D006226 1.3e-162 577.0 449 69.5
DCAR_004732 Daucus carota HOM05D005052 ORTHO05D006226 2.3e-159 566.2 377 74.0
Zm00001eb331970 Zea mays HOM05D005052 ORTHO05D006226 7.3e-158 561.2 329 84.2
CBR_g10969 Chara braunii HOM05D005052 ORTHO05D006226 9.5e-158 560.8 403 70.2
Lsat_1_v5_gn_3_125660 Lactuca sativa HOM05D005052 ORTHO05D006226 8.0e-157 557.8 439 68.8
Actinidia17421 Actinidia chinensis HOM05D005052 ORTHO05D006226 1.6e-152 543.5 287 92.3
Cre08.g368950 Chlamydomonas reinhardtii HOM05D005052 ORTHO05D006226 1.9e-145 520.0 365 69.3
CDE04G1415 Ceratophyllum demersum HOM05D005052 ORTHO05D006226 3.2e-145 519.2 287 86.8
EL10Ac6g15523 Beta vulgaris HOM05D005052 ORTHO05D006226 1.4e-140 503.8 527 55.0
Manes.02G107200 Manihot esculenta HOM05D005052 ORTHO05D006226 2.6e-139 499.6 351 76.1
MCO01G625 Micromonas commoda HOM05D005052 ORTHO05D006226 5.8e-139 498.4 398 61.3
Hma1.2p1_0315F.1_g122330 Hydrangea macrophylla HOM05D005052 ORTHO05D006226 7.6e-139 498.0 376 70.7
PRCOL_00000314 Prasinoderma coloniale HOM05D005052 ORTHO05D006226 1.7e-130 470.3 364 62.9
Ah.03g149130 Amaranthus hybridus HOM05D005052 ORTHO05D006226 7.1e-129 464.9 349 71.6
Dinv33661 Davidia involucrata HOM05D005052 ORTHO05D006226 1.6e-125 453.8 233 95.7
SEGI_14262 Sequoiadendron giganteum HOM05D005052 ORTHO05D006226 1.8e-119 433.7 289 74.7
Hma1.2p1_2620F.1_g325580 Hydrangea macrophylla HOM05D005052 ORTHO05D006226 4.9e-114 415.6 449 54.8
CDE02G2775 Ceratophyllum demersum HOM05D005052 ORTHO05D006226 1.1e-110 404.4 314 66.6
SEGI_08539 Sequoiadendron giganteum HOM05D005052 ORTHO05D006226 1.1e-97 361.3 224 77.2
CDE02G1558 Ceratophyllum demersum HOM05D005052 ORTHO05D006226 3.6e-88 329.7 256 66.8
SGA_v2.0_scaffold273G46395 Striga asiatica HOM05D005052 ORTHO05D006226 8.8e-79 298.5 187 73.3
Lsat_1_v5_gn_0_46241 Lactuca sativa HOM05D005052 ORTHO05D006226 5.7e-78 295.8 299 49.5
TPR.G6592 Trifolium pratense HOM05D005052 ORTHO05D006226 1.2e-75 288.1 273 59.0
unitig_699.g19702 Utricularia gibba HOM05D005052 ORTHO05D006226 6.5e-74 282.3 161 85.7
RcHm_v2.0_Chr2g0099011 Rosa chinensis HOM05D005052 ORTHO05D006226 7.2e-73 278.9 246 60.6
Haze_27270 Corylus avellana HOM05D005052 ORTHO05D006226 1.8e-68 264.2 355 43.4
Dinv33662 Davidia involucrata HOM05D005052 ORTHO05D006226 2.3e-63 247.3 214 65.9
Cfa024476 Carpinus fangiana HOM05D003566 ORTHO05D126353 9.2e-52 208.8 367 40.1
Rhsim07G0143100 Rhododendron simsii HOM05D005052 ORTHO05D006226 5.2e-47 193.0 184 60.3
unitig_699.g19703 Utricularia gibba HOM05D005052 ORTHO05D006226 4.4e-46 189.9 222 52.3
SEGI_40904 Sequoiadendron giganteum HOM05D005052 ORTHO05D006226 2.2e-45 187.6 113 77.9
Ah.03g149140 Amaranthus hybridus HOM05D000441 ORTHO05D000340 1.1e-28 132.1 77 79.2
SEGI_17140 Sequoiadendron giganteum HOM05D005052 ORTHO05D006226 3.2e-28 130.6 83 72.3
SEGI_34573 Sequoiadendron giganteum HOM05D005052 ORTHO05D006226 3.2e-28 130.6 83 72.3
MD02G1126200 Malus domestica HOM05D005052 ORTHO05D006226 6.6e-26 122.9 129 54.3
MD14G1099300 Malus domestica HOM05D005052 ORTHO05D006226 6.6e-26 122.9 129 54.3
DCAR_004721 Daucus carota HOM05D005052 ORTHO05D006226 4.0e-23 113.6 113 54.9
Rhsim07G0135500 Rhododendron simsii HOM05D005052 ORTHO05D006226 8.9e-23 112.5 73 75.3
SEGI_22853 Sequoiadendron giganteum HOM05D005052 ORTHO05D006226 7.1e-20 102.8 69 69.6
CDE04G1456 Ceratophyllum demersum HOM05D005052 ORTHO05D006226 2.8e-16 90.9 73 61.6
CSS0040013 Camellia sinensis var. sinensis HOM05D005052 ORTHO05D006226 2.7e-11 74.3 120 43.3
Rhsim07G0135600 Rhododendron simsii HOM05D005052 ORTHO05D339393 1.1e-09 68.9 56 62.5


User provided reference genes

Program Settings