Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.08G125800 Carya illinoinensis HOM05D003374 ORTHO05D009470 4.6e-89 331.3 172 100.0
Cfa007029 Carpinus fangiana HOM05D003374 ORTHO05D009470 2.1e-65 252.7 173 78.0
Haze_03703 Corylus avellana HOM05D003374 ORTHO05D009415 3.0e-64 248.8 173 76.9
QL06p052079 Quercus lobata HOM05D003374 ORTHO05D009470 6.2e-62 241.1 172 75.6
Prupe.7G175000 Prunus persica HOM05D003374 ORTHO05D009470 6.9e-53 211.1 172 66.9
Gohir.A02G174300 Gossypium hirsutum HOM05D003374 ORTHO05D009470 2.0e-52 209.5 172 67.4
Thecc.01G011500 Theobroma cacao HOM05D003374 ORTHO05D009470 2.6e-52 209.1 173 67.1
Manes.02G110400 Manihot esculenta HOM05D003374 ORTHO05D009470 5.8e-52 208.0 172 65.1
Atru.chr3.907 Acer truncatum HOM05D003374 ORTHO05D009470 7.6e-52 207.6 170 64.7
Duzib145G0002 Durio zibethinus HOM05D003374 ORTHO05D009470 2.2e-51 206.1 159 68.6
Ciclev10026638m.g Citrus clementina HOM05D003374 ORTHO05D009470 3.8e-51 205.3 174 64.4
Gohir.D03G005500 Gossypium hirsutum HOM05D003374 ORTHO05D009470 7.1e-50 201.1 172 66.3
Gorai.003G005900 Gossypium raimondii HOM05D003374 ORTHO05D009470 7.1e-50 201.1 172 66.3
MD15G1237400 Malus domestica HOM05D003374 ORTHO05D009470 1.3e-48 196.8 173 64.2
Rhsim10G0205800 Rhododendron simsii HOM05D003374 ORTHO05D009470 8.7e-48 194.1 178 61.8
TWI73G0454 Tripterygium wilfordii HOM05D003374 ORTHO05D009470 1.1e-47 193.7 174 60.3
Sabra05G0088300 Salix brachista HOM05D003374 ORTHO05D009470 3.3e-47 192.2 152 67.8
RcHm_v2.0_Chr2g0098351 Rosa chinensis HOM05D003374 ORTHO05D009470 1.6e-46 189.9 175 61.1
Potri.005G107800 Populus trichocarpa HOM05D003374 ORTHO05D009470 2.1e-46 189.5 174 62.6
PGR102G2171 Punica granatum HOM05D003374 ORTHO05D009470 2.1e-46 189.5 176 61.9
FAN23G1041 Fragaria x ananassa HOM05D003374 ORTHO05D009470 4.8e-46 188.3 144 68.8
FAN28G2426 Fragaria x ananassa HOM05D003374 ORTHO05D009470 1.8e-45 186.4 144 68.1
FAN26G1101 Fragaria x ananassa HOM05D003374 ORTHO05D009470 2.4e-45 186.0 144 68.1
FvH4_1g11080 Fragaria vesca HOM05D003374 ORTHO05D009470 6.9e-45 184.5 144 66.7
vmacro20496 Vaccinium macrocarpon HOM05D003374 ORTHO05D009470 2.0e-44 183.0 175 59.4
Eucgr.I02305 Eucalyptus grandis HOM05D003374 ORTHO05D009470 1.7e-43 179.9 149 67.8
Cpa.g.sc6.313 Carica papaya HOM05D003374 ORTHO05D009470 4.2e-42 175.3 178 54.5
CANSAT01G1253 Cannabis sativa HOM05D003374 ORTHO05D009470 3.5e-41 172.2 176 59.1
Cc07_g11310 Coffea canephora HOM05D003374 ORTHO05D009470 3.5e-41 172.2 181 58.0
Cc08_g04880 Coffea canephora HOM05D003374 ORTHO05D009470 3.5e-41 172.2 181 58.0
FAN19G0939 Fragaria x ananassa HOM05D003374 ORTHO05D009470 6.0e-41 171.4 157 60.5
Phvul.002G104800 Phaseolus vulgaris HOM05D003374 ORTHO05D009470 6.0e-41 171.4 179 55.9
Medtr5g022970 Medicago truncatula HOM05D003374 ORTHO05D009470 1.0e-40 170.6 178 57.9
Ca_24942_v3 Cicer arietinum L. HOM05D003374 ORTHO05D009470 2.3e-40 169.5 181 57.5
Dinv08548 Davidia involucrata HOM05D003374 ORTHO05D009470 2.3e-40 169.5 174 59.2
Lalb_Chr09g0321441 Lupinus albus HOM05D003374 ORTHO05D009470 5.1e-40 168.3 163 55.2
VMungo1215G1047 Vigna mungo HOM05D003374 ORTHO05D009470 3.3e-39 165.6 174 59.8
Duzib147G0965 Durio zibethinus HOM05D003374 ORTHO05D009470 4.3e-39 165.2 131 67.2
Glyma.11G080800 Glycine max HOM05D003374 ORTHO05D009470 4.3e-39 165.2 171 56.1
CSS0026426 Camellia sinensis var. sinensis HOM05D003374 ORTHO05D009415 7.4e-39 164.5 181 56.9
Hma1.2p1_0315F.1_g122600 Hydrangea macrophylla HOM05D003374 ORTHO05D009470 7.4e-39 164.5 145 60.7
Lj2g0014457 Lotus japonicus HOM05D003374 ORTHO05D009470 1.1e-37 160.6 146 60.3
TAR625G1139 Trochodendron aralioides HOM05D003374 ORTHO05D009470 5.3e-37 158.3 176 58.5
Lalb_Chr05g0212181 Lupinus albus HOM05D003374 ORTHO05D009470 2.0e-36 156.4 178 53.4
Glyma.01G162500 Glycine max HOM05D003374 ORTHO05D009470 1.3e-35 153.7 159 54.7
MBI09_g46000_MAGBIO Magnolia biondii HOM05D003374 ORTHO05D009470 1.6e-33 146.7 141 61.0
PSO541G4788 Papaver somniferum HOM05D003374 ORTHO05D009470 3.0e-32 142.5 136 60.3
PSO675G4674 Papaver somniferum HOM05D003374 ORTHO05D009470 3.9e-32 142.1 136 59.6
Potri.005G107900 Populus trichocarpa HOM05D003374 ORTHO05D009470 8.7e-32 141.0 120 63.3
Carub.0003s3182 Capsella rubella HOM05D003374 ORTHO05D009470 1.9e-31 139.8 162 54.9
CARHR108000 Cardamine hirsuta HOM05D003374 ORTHO05D009470 1.9e-31 139.8 148 54.7
Nitab4.5_0002105g0080 Nicotiana tabacum HOM05D003374 ORTHO05D009470 1.9e-31 139.8 180 51.7
AT2G17710 Arabidopsis thaliana HOM05D003374 ORTHO05D009470 3.3e-31 139.0 135 58.5
Sp3g31120 Schrenkiella parvula HOM05D003374 ORTHO05D009470 4.3e-31 138.7 162 51.9
Thhalv10022897m.g Eutrema salsugineum HOM05D003374 ORTHO05D009470 5.7e-31 138.3 154 50.0
THA.LOC104819731 Tarenaya hassleriana HOM05D003374 ORTHO05D009470 9.7e-31 137.5 178 50.6
Aa31LG8G14990 Aethionema arabicum HOM05D003374 ORTHO05D009470 1.3e-30 137.1 151 54.3
AL3G50710 Arabidopsis lyrata HOM05D003374 ORTHO05D009470 1.3e-30 137.1 163 52.1
C07p05580 Brassica napus HOM05D003374 ORTHO05D009470 1.3e-30 137.1 174 52.3
THA.LOC104804280 Tarenaya hassleriana HOM05D003374 ORTHO05D009470 1.6e-30 136.7 186 47.8
BcaB03g16544 Brassica carinata HOM05D003374 ORTHO05D009470 3.7e-30 135.6 161 52.2
Nitab4.5_0006892g0010 Nicotiana tabacum HOM05D003374 ORTHO05D009470 4.8e-30 135.2 180 50.6
BcaB08g34755 Brassica carinata HOM05D003374 ORTHO05D009470 8.2e-30 134.4 161 52.2
BraA07t28128Z Brassica rapa HOM05D003374 ORTHO05D009470 1.8e-29 133.3 163 50.9
BcaC06g36303 Brassica carinata HOM05D003374 ORTHO05D009470 2.4e-29 132.9 174 51.7
BolC7t40958H Brassica oleracea HOM05D003374 ORTHO05D009415 4.1e-29 132.1 176 51.7
CAN.G890.28 Capsicum annuum HOM05D003374 ORTHO05D009470 4.1e-29 132.1 174 51.7
MSTRG.22233 Avicennia marina HOM05D003374 ORTHO05D009470 6.9e-29 131.3 123 56.1
BcaC01g02894 Brassica carinata HOM05D003374 ORTHO05D009470 1.2e-28 130.6 148 52.0
C03p58640 Brassica napus HOM05D003374 ORTHO05D009470 1.2e-28 130.6 148 52.0
BolC3t18125H Brassica oleracea HOM05D003374 ORTHO05D009470 1.2e-28 130.6 148 52.0
Sopen02g028160 Solanum pennellii HOM05D003374 ORTHO05D009470 1.2e-28 130.6 175 52.0
A06p33690 Brassica napus HOM05D003374 ORTHO05D009470 2.6e-28 129.4 148 52.0
BraA06t26303Z Brassica rapa HOM05D003374 ORTHO05D009470 2.6e-28 129.4 148 52.0
PGSC0003DMG400003663 Solanum tuberosum HOM05D003374 ORTHO05D009470 3.4e-28 129.0 174 50.6
GSVIVG01005193001 Vitis vinifera HOM05D003374 ORTHO05D009470 4.5e-28 128.6 118 57.6
MSTRG.24362 Avicennia marina HOM05D003374 ORTHO05D009470 2.9e-27 125.9 128 54.7
CDE05G2149 Ceratophyllum demersum HOM05D003374 ORTHO05D009470 3.8e-27 125.6 135 51.1
Aqoxy6G01986 Aquilegia oxysepala HOM05D003374 ORTHO05D009470 5.0e-27 125.2 120 55.0
Actinidia22937 Actinidia chinensis HOM05D003374 ORTHO05D009470 1.4e-26 123.6 149 56.4
Peaxi162Scf00328g00118 Petunia axillaris HOM05D003374 ORTHO05D009470 3.2e-26 122.5 134 56.0
CDE05G3297 Ceratophyllum demersum HOM05D003374 ORTHO05D009470 1.2e-25 120.6 145 48.3
Oeu022073.1 Olea europaea HOM05D003374 ORTHO05D009470 2.1e-25 119.8 156 50.6
EL10Ac9g21336 Beta vulgaris HOM05D003374 ORTHO05D009470 3.0e-24 115.9 124 54.0
COL.COLO4_22495 Corchorus olitorius HOM05D003374 ORTHO05D009470 7.4e-23 111.3 94 68.1
AUR62012999 Chenopodium quinoa HOM05D003374 ORTHO05D009470 2.8e-22 109.4 117 54.7
SalBow6G5967 Salvia bowleyana HOM05D003374 ORTHO05D009470 3.7e-22 109.0 106 57.5
SalBow8G5385 Salvia bowleyana HOM05D003374 ORTHO05D009470 4.8e-22 108.6 106 54.7
Migut.N02761 Erythranthe guttata HOM05D003374 ORTHO05D009470 1.4e-21 107.1 117 53.8
TPR.G20269 Trifolium pratense HOM05D003374 ORTHO05D009470 1.7e-19 100.1 88 56.8
Sc18g0006270 Simmondsia chinensis HOM05D003374 ORTHO05D009470 1.1e-18 97.4 106 58.5
arahy.Tifrunner.gnm1.ann1.HG61QK Arachis hypogaea HOM05D003374 ORTHO05D009470 3.2e-18 95.9 99 52.5
arahy.Tifrunner.gnm1.ann1.YP763J Arachis hypogaea HOM05D003374 ORTHO05D009470 3.2e-18 95.9 99 52.5
Actinidia17405 Actinidia chinensis HOM05D000373 ORTHO05D001763 5.5e-18 95.1 127 52.8
unitig_578.g16135 Utricularia gibba HOM05D003374 ORTHO05D009470 1.3e-14 84.0 114 42.1
Duzib145G0007 Durio zibethinus HOM05D003374 ORTHO05D009470 2.2e-14 83.2 63 66.7
Hund00012 Selenicereus undatus HOM05D003374 ORTHO05D009470 2.4e-13 79.7 113 49.6
ATR0346G001 Amborella trichopoda HOM05D003374 ORTHO05D009470 6.9e-13 78.2 55 69.1
A07p03300 Brassica napus HOM05D003374 ORTHO05D009415 1.2e-12 77.4 97 48.5
TPR.G25136 Trifolium pratense HOM05D000373 ORTHO05D001763 3.4e-12 75.9 127 43.3
Solyc02g083380.3 Solanum lycopersicum HOM05D003374 ORTHO05D009470 5.5e-10 68.6 66 56.1
Ah.01g008140 Amaranthus hybridus HOM05D003374 ORTHO05D009470 3.6e-09 65.9 92 46.7
AUR62010008 Chenopodium quinoa HOM05D003374 ORTHO05D010386 7.4e-07 58.2 79 46.8
Os04g0560700 Oryza sativa ssp. japonica HOM05D003374 ORTHO05D009470 2.8e-06 56.2 104 38.5


User provided reference genes

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