Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.08G125500 Carya illinoinensis HOM05D005999 ORTHO05D003360 9.9e-176 620.5 451 100.0
Haze_03698 Corylus avellana HOM05D005999 ORTHO05D003360 1.4e-92 344.4 306 62.7
Cfa007034 Carpinus fangiana HOM05D005999 ORTHO05D003360 3.4e-91 339.7 307 61.9
Prupe.7G175600 Prunus persica HOM05D005999 ORTHO05D003360 1.7e-82 310.8 300 60.0
Manes.01G151300 Manihot esculenta HOM05D005999 ORTHO05D003360 3.5e-80 303.1 306 57.8
Eucgr.I02298 Eucalyptus grandis HOM05D005999 ORTHO05D003360 1.3e-79 301.2 298 57.4
QL06p052235 Quercus lobata HOM05D005999 ORTHO05D003360 2.5e-78 297.0 320 56.9
Thecc.01G010800 Theobroma cacao HOM05D005999 ORTHO05D003360 7.3e-78 295.4 300 58.7
CsaV3_6G047550 Cucumis sativus L. HOM05D005999 ORTHO05D003360 1.2e-77 294.7 293 58.0
TWI73G0962 Tripterygium wilfordii HOM05D005999 ORTHO05D003360 2.1e-77 293.9 323 52.6
MELO3C007947.2 Cucumis melo HOM05D005999 ORTHO05D003360 4.7e-77 292.7 295 57.3
ClCG01G020640 Citrullus lanatus HOM05D005999 ORTHO05D003360 1.0e-76 291.6 255 62.4
Duzib187G1063 Durio zibethinus HOM05D005999 ORTHO05D003360 6.8e-76 288.9 302 55.3
MD15G1236900 Malus domestica HOM05D005999 ORTHO05D003360 6.8e-76 288.9 281 60.1
RcHm_v2.0_Chr2g0098251 Rosa chinensis HOM05D005999 ORTHO05D003360 1.2e-75 288.1 283 60.4
Gohir.A02G174800 Gossypium hirsutum HOM05D005999 ORTHO05D003360 2.2e-74 283.9 297 55.9
Duzib147G0884 Durio zibethinus HOM05D005999 ORTHO05D003360 1.1e-73 281.6 296 57.1
FAN19G2768 Fragaria x ananassa HOM05D005999 ORTHO05D003360 1.1e-73 281.6 295 58.3
Gohir.D03G005000 Gossypium hirsutum HOM05D005999 ORTHO05D003360 1.4e-73 281.2 297 55.6
Potri.007G060400 Populus trichocarpa HOM05D005999 ORTHO05D003360 1.9e-73 280.8 285 57.5
Lalb_Chr05g0212151 Lupinus albus HOM05D005999 ORTHO05D003360 4.1e-73 279.6 290 55.9
Gorai.003G005300 Gossypium raimondii HOM05D005999 ORTHO05D003360 9.2e-73 278.5 297 55.2
arahy.Tifrunner.gnm1.ann1.74V199 Arachis hypogaea HOM05D005999 ORTHO05D003360 6.0e-72 275.8 304 52.3
arahy.Tifrunner.gnm1.ann1.JK0YGC Arachis hypogaea HOM05D005999 ORTHO05D003360 6.0e-72 275.8 304 52.3
Lj2g0014093 Lotus japonicus HOM05D005999 ORTHO05D003360 2.3e-71 273.9 294 54.1
PGR119G0821 Punica granatum HOM05D005999 ORTHO05D003360 2.3e-71 273.9 292 55.1
Sabra05G0086500 Salix brachista HOM05D005999 ORTHO05D003360 3.0e-71 273.5 307 53.1
GSVIVG01005198001 Vitis vinifera HOM05D005999 ORTHO05D003360 3.9e-71 273.1 301 53.2
FvH4_1g10990 Fragaria vesca HOM05D005999 ORTHO05D003360 1.1e-70 271.6 293 56.0
CANSAT25G3254 Cannabis sativa HOM05D005999 ORTHO05D003360 4.3e-70 269.6 314 50.6
CARHR281700 Cardamine hirsuta HOM05D005999 ORTHO05D003360 9.5e-70 268.5 308 51.3
Dinv08545 Davidia involucrata HOM05D005999 ORTHO05D003360 1.6e-69 267.7 318 51.9
Ciclev10025620m.g Citrus clementina HOM05D005999 ORTHO05D003360 2.1e-69 267.3 280 53.2
Potri.005G105800 Populus trichocarpa HOM05D005999 ORTHO05D003360 2.8e-69 266.9 305 53.1
TAR628G0133 Trochodendron aralioides HOM05D005999 ORTHO05D003360 1.1e-68 265.0 302 54.3
THA.LOC104826498 Tarenaya hassleriana HOM05D005999 ORTHO05D003360 2.3e-68 263.8 290 52.1
FAN23G1568 Fragaria x ananassa HOM05D005999 ORTHO05D003360 4.0e-68 263.1 291 55.7
Sed0006391 Sechium edule HOM05D005999 ORTHO05D003360 4.4e-67 259.6 307 52.1
C09p12060 Brassica napus HOM05D005999 ORTHO05D003360 5.8e-67 259.2 280 52.5
Nn6g31889 Nelumbo nucifera HOM05D005999 ORTHO05D003360 9.8e-67 258.5 304 51.6
A09p10170 Brassica napus HOM05D005999 ORTHO05D003360 1.7e-66 257.7 302 49.7
Glyma.01G161900 Glycine max HOM05D005999 ORTHO05D003360 4.9e-66 256.1 280 54.3
Atru.chr3.914 Acer truncatum HOM05D005999 ORTHO05D003360 8.3e-66 255.4 316 48.7
Atru.chr3.919 Acer truncatum HOM05D005999 ORTHO05D003360 8.3e-66 255.4 316 48.7
Ca_24948_v3 Cicer arietinum L. HOM05D005999 ORTHO05D003360 1.1e-65 255.0 274 52.9
BraA09t36663Z Brassica rapa HOM05D005999 ORTHO05D003360 1.4e-65 254.6 302 49.3
AT5G66055 Arabidopsis thaliana HOM05D005999 ORTHO05D003360 2.4e-65 253.8 300 48.0
Carub.0008s2845 Capsella rubella HOM05D005999 ORTHO05D003360 2.4e-65 253.8 300 47.3
BcaB04g20127 Brassica carinata HOM05D005999 ORTHO05D003360 3.2e-65 253.4 283 50.2
BolC9t54096H Brassica oleracea HOM05D005999 ORTHO05D003360 3.2e-65 253.4 282 52.1
BcaC04g23109 Brassica carinata HOM05D005999 ORTHO05D003360 7.0e-65 252.3 301 50.2
Glyma.11G081800 Glycine max HOM05D005999 ORTHO05D003360 9.2e-65 251.9 294 53.1
Thhalv10004296m.g Eutrema salsugineum HOM05D005999 ORTHO05D003360 1.2e-64 251.5 286 50.7
Phvul.002G104000 Phaseolus vulgaris HOM05D005999 ORTHO05D003360 6.0e-64 249.2 305 52.5
Lalb_Chr16g0377331 Lupinus albus HOM05D005999 ORTHO05D003360 1.0e-63 248.4 281 49.8
Sp2g30630 Schrenkiella parvula HOM05D005999 ORTHO05D003360 1.3e-63 248.1 310 47.1
AL8G45550 Arabidopsis lyrata HOM05D005999 ORTHO05D003360 1.7e-63 247.7 300 48.0
Aqoxy5G01092 Aquilegia oxysepala HOM05D005999 ORTHO05D002169 2.5e-62 243.8 334 46.4
CSS0035556 Camellia sinensis var. sinensis HOM05D005999 ORTHO05D003360 2.5e-62 243.8 310 47.7
Medtr5g022050 Medicago truncatula HOM05D005999 ORTHO05D003360 2.5e-62 243.8 247 53.0
CSS0001074 Camellia sinensis var. sinensis HOM05D005999 ORTHO05D003360 5.6e-62 242.7 310 47.4
Hma1.2p1_0315F.1_g122640 Hydrangea macrophylla HOM05D005999 ORTHO05D003360 1.2e-61 241.5 339 47.5
PSO210G1231 Papaver somniferum HOM05D005999 ORTHO05D003360 1.6e-61 241.1 308 49.4
Aa31LG9G1330 Aethionema arabicum HOM05D005999 ORTHO05D003360 4.7e-61 239.6 290 47.6
Psat2g151600 Pisum sativum HOM05D005999 ORTHO05D003360 1.4e-60 238.0 302 48.0
VMungo1215G1128 Vigna mungo HOM05D005999 ORTHO05D003360 3.1e-60 236.9 278 50.7
TPR.G25134 Trifolium pratense HOM05D005999 ORTHO05D003360 4.0e-60 236.5 298 47.0
PSO170G6629 Papaver somniferum HOM05D005999 ORTHO05D003360 1.5e-59 234.6 308 48.4
EL10Ac6g13337 Beta vulgaris HOM05D005999 ORTHO05D003360 2.6e-59 233.8 246 53.7
Nitab4.5_0005409g0010 Nicotiana tabacum HOM05D005999 ORTHO05D003360 1.3e-58 231.5 311 47.9
SGA_v2.0_scaffold58G20568 Striga asiatica HOM05D005999 ORTHO05D003360 1.3e-58 231.5 239 52.3
HanXRQChr09g0257041 Helianthus annuus HOM05D005999 ORTHO05D003360 2.2e-58 230.7 242 50.4
Lsat_1_v5_gn_4_143840 Lactuca sativa HOM05D005999 ORTHO05D003360 2.9e-58 230.3 239 52.7
Sc16g0001790 Simmondsia chinensis HOM05D005999 ORTHO05D003360 3.7e-58 229.9 302 47.0
Cc01_g06010 Coffea canephora HOM05D005999 ORTHO05D003360 6.4e-58 229.2 251 51.8
Nitab4.5_0000188g0250 Nicotiana tabacum HOM05D005999 ORTHO05D003360 6.4e-58 229.2 320 46.6
Lj6A806T47 Lonicera japonica HOM05D005999 ORTHO05D003360 1.9e-57 227.6 316 47.2
PGSC0003DMG400008679 Solanum tuberosum HOM05D005999 ORTHO05D003360 3.2e-57 226.9 313 46.0
Sopen02g012860 Solanum pennellii HOM05D005999 ORTHO05D003360 1.0e-55 221.9 314 44.6
DCAR_011582 Daucus carota HOM05D005999 ORTHO05D003360 2.3e-55 220.7 303 46.2
Actinidia28736 Actinidia chinensis HOM05D005999 ORTHO05D003360 3.0e-55 220.3 320 44.1
Solyc02g061820.4 Solanum lycopersicum HOM05D005999 ORTHO05D003360 6.6e-55 219.2 312 44.9
Hund16623 Selenicereus undatus HOM05D005999 ORTHO05D003360 1.9e-54 217.6 320 44.4
vmacro18444 Vaccinium macrocarpon HOM05D005999 ORTHO05D003360 5.6e-54 216.1 318 43.1
MSTRG.3620 Avicennia marina HOM05D005999 ORTHO05D003360 3.6e-53 213.4 298 44.0
COL.COLO4_22501 Corchorus olitorius HOM05D005999 ORTHO05D003360 6.2e-53 212.6 171 67.3
HPP92_001740 Vanilla planifolia HOM05D005999 ORTHO05D003360 8.1e-53 212.2 255 47.8
CAN.G865.12 Capsicum annuum HOM05D005999 ORTHO05D003360 1.1e-52 211.8 254 48.4
Ah.02g129080 Amaranthus hybridus HOM05D005999 ORTHO05D003360 2.4e-52 210.7 307 44.0
CDE05G3499 Ceratophyllum demersum HOM05D005999 ORTHO05D003360 4.0e-52 209.9 246 48.8
Rhsim08G0029800 Rhododendron simsii HOM05D005999 ORTHO05D003360 2.6e-51 207.2 325 39.7
MBI05_g32278_MAGBIO Magnolia biondii HOM05D005999 ORTHO05D003360 3.4e-51 206.8 347 40.9
Medtr5g023090 Medicago truncatula HOM05D005999 ORTHO05D003360 7.6e-51 205.7 279 44.8
SalBow5G5732 Salvia bowleyana HOM05D005999 ORTHO05D003360 3.8e-50 203.4 310 41.6
Migut.L00736 Erythranthe guttata HOM05D005999 ORTHO05D003360 7.8e-48 195.7 328 42.1
Glyma.11G081900 Glycine max HOM05D005999 ORTHO05D003360 1.7e-47 194.5 284 44.7
Phvul.002G103900 Phaseolus vulgaris HOM05D005999 ORTHO05D003360 6.9e-44 182.6 255 48.2
ATR0661G352 Amborella trichopoda HOM05D005999 ORTHO05D003360 3.4e-43 180.3 340 36.5
VMungo1215G2992 Vigna mungo HOM05D005999 ORTHO05D003360 4.4e-43 179.9 251 47.4
Os03g0135600 Oryza sativa ssp. japonica HOM05D005999 ORTHO05D003360 3.8e-42 176.8 310 39.4
Zm00001eb002820 Zea mays HOM05D005999 ORTHO05D003360 4.3e-38 163.3 313 38.3
Cpa.g.sc6.319 Carica papaya HOM05D005999 ORTHO05D003360 9.6e-38 162.2 98 80.6
ECA232G4368 Erigeron canadensis HOM05D005999 ORTHO05D003360 1.9e-33 147.9 168 47.0
Oeu020651.1 Olea europaea HOM05D005999 ORTHO05D003360 2.4e-33 147.5 243 39.1
AUR62026380 Chenopodium quinoa HOM05D005999 ORTHO05D003360 6.0e-32 142.9 99 67.7
Cpa.g.sc6.318 Carica papaya HOM05D005999 ORTHO05D003360 7.9e-32 142.5 159 53.5
AUR62026216 Chenopodium quinoa HOM05D005999 ORTHO05D003360 5.1e-31 139.8 99 66.7
PSO017G5004 Papaver somniferum HOM05D005999 ORTHO05D003360 1.4e-28 131.7 249 39.8
Peaxi162Scf00439g00012 Petunia axillaris HOM05D005999 ORTHO05D003360 8.2e-21 105.9 230 37.4
Zm00001eb170850 Zea mays HOM05D005999 ORTHO05D003360 2.2e-18 97.8 80 60.0
Zm00001eb211570 Zea mays HOM05D005999 ORTHO05D003360 1.2e-16 92.0 64 65.6
Zm00001eb242830 Zea mays HOM05D005999 ORTHO05D003360 1.6e-16 91.7 64 65.6
MD02G1122900 Malus domestica HOM05D005999 ORTHO05D003360 1.1e-14 85.5 71 63.4
CANSAT01G1435 Cannabis sativa HOM05D005999 ORTHO05D003360 2.2e-13 81.3 54 66.7
SalBow3G2044 Salvia bowleyana HOM05D005999 ORTHO05D003360 4.8e-13 80.1 159 34.0
SalBow6G0049 Salvia bowleyana HOM05D005999 ORTHO05D003360 3.1e-12 77.4 157 33.1
SalBow6G2335 Salvia bowleyana HOM05D002275 ORTHO05D003360 3.1e-12 77.4 137 34.3
RcHm_v2.0_Chr1g0316981 Rosa chinensis HOM05D005999 ORTHO05D003360 4.1e-12 77.0 50 70.0
SalBow2G0094 Salvia bowleyana HOM05D003663 ORTHO05D005327 1.5e-11 75.1 160 32.5
RcHm_v2.0_Chr1g0316921 Rosa chinensis HOM05D005999 ORTHO05D003360 5.0e-10 70.1 46 67.4
Pp3c8_14440 Physcomitrium patens HOM05D005999 ORTHO05D003360 5.5e-09 66.6 253 26.5
CANSAT54G2046 Cannabis sativa HOM05D005999 ORTHO05D003360 3.6e-08 63.9 54 57.4
SEGI_15817 Sequoiadendron giganteum HOM05D005999 ORTHO05D003360 1.4e-07 62.0 55 52.7
Glyma.17G206001 Glycine max HOM05D005999 ORTHO05D003360 8.8e-07 59.3 68 54.4


User provided reference genes

Program Settings