Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.08G117600 Carya illinoinensis HOM05D006824 ORTHO05D008779 3.8e-128 461.5 225 100.0
Haze_04530 Corylus avellana HOM05D006824 ORTHO05D008779 3.8e-104 381.7 216 83.3
Atru.chr12.2132 Acer truncatum HOM05D006824 ORTHO05D008779 1.6e-94 349.7 218 72.5
RcHm_v2.0_Chr3g0448181 Rosa chinensis HOM05D006824 ORTHO05D008779 6.2e-94 347.8 219 72.6
Actinidia38928 Actinidia chinensis HOM05D006824 ORTHO05D008779 5.2e-93 344.7 207 75.4
CSS0012922 Camellia sinensis var. sinensis HOM05D006824 ORTHO05D008779 8.9e-93 344.0 204 76.0
CSS0029100 Camellia sinensis var. sinensis HOM05D006824 ORTHO05D008779 8.9e-93 344.0 204 76.0
Lalb_Chr19g0126751 Lupinus albus HOM05D006824 ORTHO05D008779 3.4e-92 342.0 204 76.0
Lj8A196G47 Lonicera japonica HOM05D006824 ORTHO05D008779 4.4e-92 341.7 216 72.2
FAN05G0802 Fragaria x ananassa HOM05D006824 ORTHO05D008779 2.2e-91 339.3 210 73.3
vmacro06000 Vaccinium macrocarpon HOM05D006824 ORTHO05D008779 8.3e-91 337.4 217 70.5
Lsat_1_v5_gn_9_48761 Lactuca sativa HOM05D006824 ORTHO05D008779 1.9e-90 336.3 207 72.5
MD12G1258900 Malus domestica HOM05D006824 ORTHO05D008779 1.9e-90 336.3 212 71.7
GSVIVG01019144001 Vitis vinifera HOM05D006824 ORTHO05D008779 1.9e-90 336.3 211 72.0
Rhsim03G0265800 Rhododendron simsii HOM05D006824 ORTHO05D008779 4.1e-90 335.1 207 72.0
TWI14G0776 Tripterygium wilfordii HOM05D006824 ORTHO05D008779 4.1e-90 335.1 205 73.7
CANSAT54G2581 Cannabis sativa HOM05D006824 ORTHO05D008779 7.0e-90 334.3 215 73.0
PGSC0003DMG400023472 Solanum tuberosum HOM05D006824 ORTHO05D008779 3.5e-89 332.0 214 71.0
TPR.G28449 Trifolium pratense HOM05D006824 ORTHO05D008779 6.0e-89 331.3 214 71.0
ECA232G2571 Erigeron canadensis HOM05D006824 ORTHO05D008779 7.8e-89 330.9 212 68.9
Oeu010150.1 Olea europaea HOM05D006824 ORTHO05D008779 7.8e-89 330.9 221 66.5
Dinv04348 Davidia involucrata HOM05D006824 ORTHO05D008779 1.0e-88 330.5 216 71.3
Prupe.6G359400 Prunus persica HOM05D006824 ORTHO05D008779 1.0e-88 330.5 210 70.0
Thecc.05G206500 Theobroma cacao HOM05D006824 ORTHO05D008779 1.0e-88 330.5 212 70.3
Sopen05g034220 Solanum pennellii HOM05D006824 ORTHO05D008779 3.9e-88 328.6 219 69.9
HanXRQChr11g0323941 Helianthus annuus HOM05D006824 ORTHO05D008779 6.6e-88 327.8 210 71.0
Nitab4.5_0005183g0030 Nicotiana tabacum HOM05D006824 ORTHO05D008779 8.6e-88 327.4 209 69.4
Eucgr.H01379 Eucalyptus grandis HOM05D006824 ORTHO05D008779 1.1e-87 327.0 210 71.9
Gorai.003G050700 Gossypium raimondii HOM05D006824 ORTHO05D008779 1.1e-87 327.0 207 71.5
Gohir.A02G138800 Gossypium hirsutum HOM05D006824 ORTHO05D008779 1.9e-87 326.2 207 71.0
Manes.14G158930 Manihot esculenta HOM05D006824 ORTHO05D008779 1.9e-87 326.2 217 68.2
Medtr7g079530 Medicago truncatula HOM05D006824 ORTHO05D008779 1.9e-87 326.2 214 69.2
Duzib128G1599 Durio zibethinus HOM05D006824 ORTHO05D008779 3.3e-87 325.5 212 69.3
Potri.010G143000 Populus trichocarpa HOM05D006824 ORTHO05D008779 3.3e-87 325.5 201 73.1
Ca_07965_v3 Cicer arietinum L. HOM05D006824 ORTHO05D008779 4.3e-87 325.1 214 68.2
Glyma.09G252100 Glycine max HOM05D006824 ORTHO05D008779 7.3e-87 324.3 204 73.0
Psat3g104840 Pisum sativum HOM05D006824 ORTHO05D008779 9.5e-87 323.9 214 68.2
CAN.G694.18 Capsicum annuum HOM05D006824 ORTHO05D008779 1.2e-86 323.6 219 68.0
PGR031G0982 Punica granatum HOM05D006824 ORTHO05D008779 2.1e-86 322.8 220 66.8
COL.COLO4_19831 Corchorus olitorius HOM05D006824 ORTHO05D008779 2.8e-86 322.4 212 69.8
Phvul.008G055700 Phaseolus vulgaris HOM05D006824 ORTHO05D008779 2.8e-86 322.4 213 69.0
VMungo1383G3541 Vigna mungo HOM05D006824 ORTHO05D008779 4.7e-86 321.6 214 69.2
Glyma.18G240500 Glycine max HOM05D006824 ORTHO05D008779 6.2e-86 321.2 214 69.2
Sed0011929 Sechium edule HOM05D006824 ORTHO05D008779 1.8e-85 319.7 210 68.6
ClCG11G010940 Citrullus lanatus HOM05D006824 ORTHO05D008779 5.2e-85 318.2 219 67.1
Cc09_g03430 Coffea canephora HOM05D006824 ORTHO05D008779 8.9e-85 317.4 222 67.6
FAN02G3690 Fragaria x ananassa HOM05D006824 ORTHO05D008779 3.4e-84 315.5 221 66.5
DCAR_005505 Daucus carota HOM05D006824 ORTHO05D008779 4.4e-84 315.1 204 68.1
PSO170G6807 Papaver somniferum HOM05D006824 ORTHO05D008779 4.4e-84 315.1 218 65.1
CsaV3_2G009540 Cucumis sativus L. HOM05D006824 ORTHO05D008779 9.8e-84 313.9 205 69.3
FAN14G1847 Fragaria x ananassa HOM05D006824 ORTHO05D008779 1.7e-83 313.2 210 68.6
TAR362G0347 Trochodendron aralioides HOM05D006824 ORTHO05D008779 1.7e-83 313.2 203 72.9
Sabra10G0110900 Salix brachista HOM05D006824 ORTHO05D008779 2.9e-83 312.4 196 71.4
AL2G41760 Arabidopsis lyrata HOM05D006824 ORTHO05D008779 1.4e-82 310.1 207 68.6
Aqoxy5G00154 Aquilegia oxysepala HOM05D006824 ORTHO05D008779 4.1e-82 308.5 217 66.4
arahy.Tifrunner.gnm1.ann1.3Y20MY Arachis hypogaea HOM05D006824 ORTHO05D008779 7.1e-82 307.8 202 67.8
AUR62006674 Chenopodium quinoa HOM05D006824 ORTHO05D008779 1.2e-81 307.0 209 64.6
arahy.Tifrunner.gnm1.ann1.8HY0WZ Arachis hypogaea HOM05D006824 ORTHO05D008779 1.6e-81 306.6 202 67.3
AUR62000332 Chenopodium quinoa HOM05D006824 ORTHO05D008779 1.6e-81 306.6 209 64.6
Sp5g35980 Schrenkiella parvula HOM05D006824 ORTHO05D008779 2.7e-81 305.8 215 64.7
EL10Ac4g09985 Beta vulgaris HOM05D006824 ORTHO05D008779 6.0e-81 304.7 212 64.6
BraA07t30276Z Brassica rapa HOM05D006824 ORTHO05D008779 1.3e-80 303.5 216 63.0
THA.LOC104813550 Tarenaya hassleriana HOM05D006824 ORTHO05D008779 1.3e-80 303.5 216 63.4
SGA_v2.0_scaffold13G06472 Striga asiatica HOM05D006824 ORTHO05D008779 1.7e-80 303.1 203 66.5
Aa31LG4G40 Aethionema arabicum HOM05D006824 ORTHO05D008779 3.0e-80 302.4 216 66.2
A07p26320 Brassica napus HOM05D006824 ORTHO05D008779 3.0e-80 302.4 216 62.0
CDE09G0666 Ceratophyllum demersum HOM05D006824 ORTHO05D008779 3.0e-80 302.4 208 68.3
CARHR049030 Cardamine hirsuta HOM05D006824 ORTHO05D008779 3.9e-80 302.0 212 65.1
Migut.F01795 Erythranthe guttata HOM05D006824 ORTHO05D008779 5.1e-80 301.6 197 68.0
CDE02G0053 Ceratophyllum demersum HOM05D006824 ORTHO05D008779 8.6e-80 300.8 212 67.0
C06p28710 Brassica napus HOM05D006824 ORTHO05D008779 1.5e-79 300.1 212 64.2
SalBow3G1586 Salvia bowleyana HOM05D006824 ORTHO05D008779 9.5e-79 297.4 242 57.9
Ciclev10012732m.g Citrus clementina HOM05D006824 ORTHO05D008779 2.8e-78 295.8 173 78.0
Carub.0002s2772 Capsella rubella HOM05D006824 ORTHO05D008779 1.4e-77 293.5 209 66.0
Thhalv10019052m.g Eutrema salsugineum HOM05D006824 ORTHO05D008779 1.4e-77 293.5 201 64.7
BolC6t38040H Brassica oleracea HOM05D006824 ORTHO05D008779 9.9e-76 287.3 239 55.6
Lj1g0017863 Lotus japonicus HOM05D006824 ORTHO05D008779 4.9e-75 285.0 178 71.9
AT1G79790 Arabidopsis thaliana HOM05D006824 ORTHO05D008779 1.9e-74 283.1 243 57.6
HPP92_009935 Vanilla planifolia HOM05D006824 ORTHO05D008779 1.2e-73 280.4 174 70.1
Cpa.g.sc123.9 Carica papaya HOM05D006824 ORTHO05D008779 3.9e-72 275.4 168 73.8
Nn1g09799 Nelumbo nucifera HOM05D006824 ORTHO05D008779 1.1e-71 273.9 178 70.8
MELO3C008753.2 Cucumis melo HOM05D006824 ORTHO05D008779 3.6e-70 268.9 171 70.2
MELO3C025302.2 Cucumis melo HOM05D006824 ORTHO05D008779 4.7e-70 268.5 171 69.6
Ah.06g195550 Amaranthus hybridus HOM05D006824 ORTHO05D008779 3.1e-69 265.8 200 65.0
SMO361G0474 Selaginella moellendorffii HOM05D006824 ORTHO05D008779 1.3e-67 260.4 192 60.9
FvH4_6g00710 Fragaria vesca HOM05D006824 ORTHO05D008779 2.4e-66 256.1 152 75.7
Hma1.2p1_0171F.1_g075760 Hydrangea macrophylla HOM05D006824 ORTHO05D008779 3.3e-63 245.7 133 83.5
Gohir.D03G049300 Gossypium hirsutum HOM05D006824 ORTHO05D008779 2.1e-62 243.0 144 76.4
MBI08_g02107_MAGBIO Magnolia biondii HOM05D006824 ORTHO05D008779 2.8e-62 242.7 167 64.1
Nitab4.5_0009285g0020 Nicotiana tabacum HOM05D006824 ORTHO05D008779 2.8e-62 242.7 176 64.2
Mapoly0002s0020 Marchantia polymorpha HOM05D006824 ORTHO05D008779 6.2e-62 241.5 215 51.2
AagrBONN_evm.TU.Sc2ySwM_344.3559 Anthoceros agrestis HOM05D006824 ORTHO05D008779 2.4e-61 239.6 209 53.1
Pp3c3_9990 Physcomitrium patens HOM05D006824 ORTHO05D008779 3.1e-61 239.2 202 51.5
CBR_g54655 Chara braunii HOM05D006824 ORTHO05D008779 2.9e-59 232.6 194 54.1
Zm00001eb169290 Zea mays HOM05D006824 ORTHO05D008779 9.3e-58 227.6 146 66.4
SalBow3G1143 Salvia bowleyana HOM05D006824 ORTHO05D008779 1.6e-57 226.9 188 57.4
QL01p046721 Quercus lobata HOM05D006824 ORTHO05D008779 5.3e-53 211.8 129 76.7
MD04G1242100 Malus domestica HOM05D006824 ORTHO05D008779 3.2e-50 202.6 123 74.0
Cre13.g563200 Chlamydomonas reinhardtii HOM05D006824 ORTHO05D008779 2.4e-45 186.4 205 44.4
Nitab4.5_0008294g0020 Nicotiana tabacum HOM05D006824 ORTHO05D008779 3.4e-44 182.6 214 45.8
Hund07329 Selenicereus undatus HOM05D006824 ORTHO05D008779 2.1e-41 173.3 205 42.9
arahy.Tifrunner.gnm1.ann1.EIZA4A Arachis hypogaea HOM05D006824 ORTHO05D008779 4.3e-39 165.6 102 68.6
PRCOL_00006210 Prasinoderma coloniale HOM05D006824 ORTHO05D008779 2.8e-38 162.9 196 39.8
arahy.Tifrunner.gnm1.ann1.JEI8NT Arachis hypogaea HOM05D006824 ORTHO05D008779 2.1e-33 146.7 93 64.5
FAN09G4644 Fragaria x ananassa HOM05D006824 ORTHO05D008779 5.7e-31 138.7 80 78.8
Solyc05g055820.3 Solanum lycopersicum HOM05D006824 ORTHO05D008779 1.1e-29 134.4 92 64.1
Psat3g104160 Pisum sativum HOM05D006824 ORTHO05D008779 1.8e-21 107.1 60 78.3
CARHR074720 Cardamine hirsuta HOM05D006824 ORTHO05D008779 3.1e-21 106.3 89 56.2
MD04G1242000 Malus domestica HOM05D006824 ORTHO05D008779 7.7e-20 101.7 74 60.8
SEGI_14412 Sequoiadendron giganteum HOM05D006824 ORTHO05D008779 6.5e-19 98.6 54 77.8
ATR0824G111 Amborella trichopoda HOM05D006824 ORTHO05D008779 3.0e-16 89.7 66 65.2
arahy.Tifrunner.gnm1.ann1.X7EDXL Arachis hypogaea HOM05D006824 ORTHO05D021501 4.4e-15 85.9 55 69.1
ATR0263G001 Amborella trichopoda HOM05D006824 ORTHO05D008779 1.7e-11 73.9 68 50.0
SEGI_33071 Sequoiadendron giganteum HOM05D006824 ORTHO05D008779 3.2e-10 69.7 75 45.3
FAN09G1422 Fragaria x ananassa HOM05D001170 ORTHO05D002759 4.2e-10 69.3 53 58.5
arahy.Tifrunner.gnm1.ann1.0X0W56 Arachis hypogaea HOM05D006824 ORTHO05D021501 5.5e-10 68.9 92 42.4
arahy.Tifrunner.gnm1.ann1.2JVF5K Arachis hypogaea HOM05D001175 ORTHO05D021501 5.5e-10 68.9 92 42.4
arahy.Tifrunner.gnm1.ann1.96LZZJ Arachis hypogaea HOM05D006824 ORTHO05D021501 5.5e-10 68.9 92 42.4
arahy.Tifrunner.gnm1.ann1.DM3ST4 Arachis hypogaea HOM05D006824 ORTHO05D021501 5.5e-10 68.9 92 42.4
arahy.Tifrunner.gnm1.ann1.LN2II4 Arachis hypogaea HOM05D006661 ORTHO05D021501 1.6e-09 67.4 91 41.8
Cpa.g.sc32.161 Carica papaya HOM05D006824 ORTHO05D008779 6.7e-08 62.0 33 78.8


User provided reference genes

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