Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.08G117500 Carya illinoinensis HOM05D004531 ORTHO05D005484 2.7e-121 438.7 230 100.0
Prupe.4G200900 Prunus persica HOM05D004531 ORTHO05D005484 3.3e-95 352.1 230 77.4
GSVIVG01029836001 Vitis vinifera HOM05D004531 ORTHO05D005484 3.3e-95 352.1 230 76.5
Duzib248G1029 Durio zibethinus HOM05D004531 ORTHO05D005484 4.4e-95 351.7 230 77.8
Prupe.8G106900 Prunus persica HOM05D004531 ORTHO05D005484 5.7e-95 351.3 230 77.4
PGR042G0151 Punica granatum HOM05D004531 ORTHO05D005484 1.4e-93 346.7 230 77.0
Dinv37065 Davidia involucrata HOM05D004531 ORTHO05D005484 3.5e-92 342.0 230 75.7
Gohir.D10G227700 Gossypium hirsutum HOM05D004531 ORTHO05D005484 4.5e-92 341.7 230 76.1
CSS0023033 Camellia sinensis var. sinensis HOM05D004531 ORTHO05D005484 1.3e-91 340.1 230 75.7
Gorai.011G260100 Gossypium raimondii HOM05D004531 ORTHO05D005484 1.3e-91 340.1 230 76.1
Thecc.05G127100 Theobroma cacao HOM05D004531 ORTHO05D005484 2.9e-91 339.0 230 74.8
Atru.chr2.471 Acer truncatum HOM05D004531 ORTHO05D005484 5.0e-91 338.2 230 75.2
Hma1.2p1_0341F.1_g130530 Hydrangea macrophylla HOM05D004531 ORTHO05D005484 8.5e-91 337.4 230 75.7
Manes.11G057800 Manihot esculenta HOM05D004531 ORTHO05D005484 8.5e-91 337.4 230 75.7
TWI77G0822 Tripterygium wilfordii HOM05D004531 ORTHO05D005484 1.9e-90 336.3 230 75.2
Gohir.A06G180300 Gossypium hirsutum HOM05D004531 ORTHO05D005484 2.5e-90 335.9 230 75.2
Potri.016G024300 Populus trichocarpa HOM05D004531 ORTHO05D005484 9.4e-90 334.0 230 74.8
Sed0018245 Sechium edule HOM05D004531 ORTHO05D005484 1.2e-89 333.6 230 74.3
Ciclev10012657m.g Citrus clementina HOM05D004531 ORTHO05D005484 2.1e-89 332.8 230 72.2
MELO3C008757.2 Cucumis melo HOM05D004531 ORTHO05D005484 2.7e-89 332.4 230 74.3
Eucgr.A02172 Eucalyptus grandis HOM05D004531 ORTHO05D005484 2.7e-89 332.4 230 74.3
CAN.G641.37 Capsicum annuum HOM05D004531 ORTHO05D005484 6.1e-89 331.3 230 73.5
CANSAT56G3883 Cannabis sativa HOM05D004531 ORTHO05D005484 8.0e-89 330.9 230 73.0
Lj7A661T48 Lonicera japonica HOM05D004531 ORTHO05D005484 8.0e-89 330.9 230 73.0
Solyc10g079430.2 Solanum lycopersicum HOM05D004531 ORTHO05D005484 1.4e-88 330.1 230 73.0
ClCG11G010890 Citrullus lanatus HOM05D004531 ORTHO05D005484 1.8e-88 329.7 230 73.5
RcHm_v2.0_Chr5g0037141 Rosa chinensis HOM05D004531 ORTHO05D005484 2.3e-88 329.3 230 72.2
PGSC0003DMG400008162 Solanum tuberosum HOM05D004531 ORTHO05D005484 3.9e-88 328.6 230 73.0
Nitab4.5_0000082g0350 Nicotiana tabacum HOM05D004531 ORTHO05D005484 5.2e-88 328.2 230 73.5
Sabra16G0021800 Salix brachista HOM05D004531 ORTHO05D005484 5.2e-88 328.2 230 73.5
Haze_23723 Corylus avellana HOM05D004531 ORTHO05D005484 8.8e-88 327.4 307 62.2
Nitab4.5_0000646g0260 Nicotiana tabacum HOM05D004531 ORTHO05D005484 8.8e-88 327.4 230 72.6
CsaV3_2G009570 Cucumis sativus L. HOM05D004531 ORTHO05D005484 1.1e-87 327.0 230 73.0
Ciclev10010418m.g Citrus clementina HOM05D004531 ORTHO05D005484 1.5e-87 326.6 230 71.7
Migut.J01686 Erythranthe guttata HOM05D004531 ORTHO05D005484 1.5e-87 326.6 232 72.8
Nn5g28465 Nelumbo nucifera HOM05D004531 ORTHO05D005484 1.5e-87 326.6 230 71.7
Cc06_g18540 Coffea canephora HOM05D004531 ORTHO05D005484 7.4e-87 324.3 230 71.3
SalBow6G4182 Salvia bowleyana HOM05D004531 ORTHO05D005484 7.4e-87 324.3 230 70.9
Glyma.08G077300 Glycine max HOM05D004531 ORTHO05D005484 1.3e-86 323.6 231 72.3
MD11G1228700 Malus domestica HOM05D004531 ORTHO05D005484 1.7e-86 323.2 229 71.2
MBI13_g30229_MAGBIO Magnolia biondii HOM05D004531 ORTHO05D005484 3.7e-86 322.0 239 69.0
Nitab4.5_0010736g0010 Nicotiana tabacum HOM05D004531 ORTHO05D005484 4.8e-86 321.6 230 73.0
MD15G1425000 Malus domestica HOM05D004531 ORTHO05D005484 6.3e-86 321.2 230 70.9
Ca_18320_v3 Cicer arietinum L. HOM05D004531 ORTHO05D005484 3.1e-85 318.9 230 70.0
Lalb_Chr13g0291551 Lupinus albus HOM05D004531 ORTHO05D005484 3.1e-85 318.9 230 71.3
Glyma.05G122300 Glycine max HOM05D004531 ORTHO05D005484 7.0e-85 317.8 231 72.3
ECA238G4589 Erigeron canadensis HOM05D004531 ORTHO05D005484 1.2e-84 317.0 230 70.4
MSTRG.6389 Avicennia marina HOM05D004531 ORTHO05D005484 1.6e-84 316.6 230 70.9
TAR374G0360 Trochodendron aralioides HOM05D004531 ORTHO05D005484 1.6e-84 316.6 230 70.0
FvH4_3g21660 Fragaria vesca HOM05D004531 ORTHO05D005484 2.0e-84 316.2 230 70.0
HanXRQChr14g0437741 Helianthus annuus HOM05D004531 ORTHO05D005484 2.0e-84 316.2 230 69.6
COL.COLO4_07074 Corchorus olitorius HOM05D004531 ORTHO05D005484 3.5e-84 315.5 231 71.9
VMungo0251G1523 Vigna mungo HOM05D004531 ORTHO05D005484 4.5e-84 315.1 230 70.0
EL10Ac1g01672 Beta vulgaris HOM05D004531 ORTHO05D005484 1.0e-83 313.9 230 70.9
EL10Ac9g22646 Beta vulgaris HOM05D004531 ORTHO05D005484 1.7e-83 313.2 230 70.9
vmacro07599 Vaccinium macrocarpon HOM05D004531 ORTHO05D005484 2.9e-83 312.4 230 69.6
Phvul.002G203400 Phaseolus vulgaris HOM05D004531 ORTHO05D005484 5.0e-83 311.6 230 69.1
MD11G1228500 Malus domestica HOM05D004531 ORTHO05D005484 6.5e-83 311.2 250 65.2
Peaxi162Scf00002g10416 Petunia axillaris HOM05D004531 ORTHO05D005484 1.1e-82 310.5 263 62.0
Sc15g0002670 Simmondsia chinensis HOM05D004531 ORTHO05D005484 1.9e-82 309.7 230 69.1
Medtr4g094380 Medicago truncatula HOM05D004531 ORTHO05D005484 2.5e-82 309.3 230 69.1
SGA_v2.0_scaffold69G23138 Striga asiatica HOM05D004531 ORTHO05D005484 5.5e-82 308.1 232 68.1
Lj6g0006960 Lotus japonicus HOM05D004531 ORTHO05D005484 1.6e-81 306.6 231 68.8
Aqoxy2G03324 Aquilegia oxysepala HOM05D004531 ORTHO05D005484 2.7e-81 305.8 230 66.5
arahy.Tifrunner.gnm1.ann1.35U2WI Arachis hypogaea HOM05D004531 ORTHO05D005484 2.7e-81 305.8 232 69.8
arahy.Tifrunner.gnm1.ann1.8UG22X Arachis hypogaea HOM05D004531 ORTHO05D005484 2.7e-81 305.8 232 69.8
Sabra16G0030200 Salix brachista HOM05D004531 ORTHO05D005484 2.7e-81 305.8 220 71.4
FAN11G1137 Fragaria x ananassa HOM05D004531 ORTHO05D005484 4.7e-81 305.1 252 64.3
DCAR_020613 Daucus carota HOM05D004531 ORTHO05D005484 8.0e-81 304.3 230 67.4
QL09p051267 Quercus lobata HOM05D004531 ORTHO05D005484 1.0e-80 303.9 360 51.7
Cpa.g.sc115.24 Carica papaya HOM05D004531 ORTHO05D005484 1.4e-80 303.5 230 69.1
RhsimUnG0021500 Rhododendron simsii HOM05D004531 ORTHO05D005484 1.8e-80 303.1 254 64.6
Os01g0810000 Oryza sativa ssp. japonica HOM05D004531 ORTHO05D005484 4.0e-80 302.0 230 66.5
TPR.G23804 Trifolium pratense HOM05D004531 ORTHO05D005484 6.7e-80 301.2 231 67.1
AUR62022353 Chenopodium quinoa HOM05D004531 ORTHO05D005484 1.2e-79 300.4 230 68.7
Gohir.A08G129500 Gossypium hirsutum HOM05D004531 ORTHO05D005484 2.6e-79 299.3 230 69.6
AUR62034356 Chenopodium quinoa HOM05D004531 ORTHO05D005484 3.3e-79 298.9 230 67.8
Psat7g095600 Pisum sativum HOM05D004531 ORTHO05D005484 4.4e-79 298.5 230 68.7
Lsat_1_v5_gn_2_52561 Lactuca sativa HOM05D004531 ORTHO05D005484 7.5e-79 297.7 220 68.6
HPP92_027481 Vanilla planifolia HOM05D004531 ORTHO05D005484 2.8e-78 295.8 230 67.0
arahy.Tifrunner.gnm1.ann1.JM9XLQ Arachis hypogaea HOM05D004531 ORTHO05D005484 6.3e-78 294.7 232 68.5
PSO210G4508 Papaver somniferum HOM05D004531 ORTHO05D005484 2.4e-77 292.7 230 66.5
THA.LOC104820245 Tarenaya hassleriana HOM05D004531 ORTHO05D005484 2.7e-76 289.3 232 65.5
unitig_746.g26802 Utricularia gibba HOM05D004531 ORTHO05D005484 2.9e-75 285.8 230 63.5
MELO3C023654.2 Cucumis melo HOM05D004531 ORTHO05D005484 6.5e-75 284.6 236 63.1
PSO210G2223 Papaver somniferum HOM05D004531 ORTHO05D005484 1.9e-74 283.1 230 64.3
BcaB02g08172 Brassica carinata HOM05D004531 ORTHO05D005484 1.6e-73 280.0 230 61.3
BcaC07g42771 Brassica carinata HOM05D004531 ORTHO05D005484 2.7e-73 279.3 230 61.3
A04p01660 Brassica napus HOM05D004531 ORTHO05D005484 3.6e-73 278.9 230 60.9
BraA09t40693Z Brassica rapa HOM05D004531 ORTHO05D005484 6.1e-73 278.1 230 60.9
BcaC02g10151 Brassica carinata HOM05D004531 ORTHO05D005484 1.0e-72 277.3 230 60.4
A09p52640 Brassica napus HOM05D004531 ORTHO05D005484 1.4e-72 276.9 230 60.9
C04p32210 Brassica napus HOM05D004531 ORTHO05D005484 1.4e-72 276.9 230 60.4
BolC8t51130H Brassica oleracea HOM05D004531 ORTHO05D005484 1.8e-72 276.6 230 60.4
Sp5g02860 Schrenkiella parvula HOM05D004531 ORTHO05D005484 2.3e-72 276.2 230 60.4
SpUn0080_0040 Schrenkiella parvula HOM05D004531 ORTHO05D005484 2.3e-72 276.2 230 60.4
C08p35370 Brassica napus HOM05D004531 ORTHO05D005484 3.0e-72 275.8 230 60.4
Carub.0005s2711 Capsella rubella HOM05D004531 ORTHO05D005484 3.0e-72 275.8 230 60.4
Thhalv10006222m.g Eutrema salsugineum HOM05D004531 ORTHO05D005484 4.0e-72 275.4 230 60.0
AL5G42600 Arabidopsis lyrata HOM05D004531 ORTHO05D005484 1.5e-71 273.5 230 60.9
ClCG09G010350 Citrullus lanatus HOM05D004531 ORTHO05D005484 3.4e-71 272.3 220 63.6
Aa31LG3G11700 Aethionema arabicum HOM05D004531 ORTHO05D005484 6.3e-70 268.1 231 60.2
AT3G60360 Arabidopsis thaliana HOM05D004531 ORTHO05D005484 6.3e-70 268.1 230 59.6
CARHR170680 Cardamine hirsuta HOM05D004531 ORTHO05D005484 1.4e-69 266.9 230 59.6
SGA_v2.0_scaffold105G30334 Striga asiatica HOM05D004531 ORTHO05D005484 7.0e-69 264.6 199 65.8
RhsimUnG0117400 Rhododendron simsii HOM05D004531 ORTHO05D005484 1.2e-68 263.8 318 50.0
CsaV3_7G024290 Cucumis sativus L. HOM05D004531 ORTHO05D005484 6.6e-67 258.1 230 60.4
Zm00001eb369240 Zea mays HOM05D004531 ORTHO05D005484 1.1e-66 257.3 213 62.0
TAR636G0629 Trochodendron aralioides HOM05D004531 ORTHO05D005484 3.6e-65 252.3 182 70.9
Duzib052G0496 Durio zibethinus HOM05D004531 ORTHO05D005484 3.5e-60 235.7 165 72.1
Cfa002196 Carpinus fangiana HOM05D004531 ORTHO05D005484 7.8e-60 234.6 140 83.6
Sopen10g030070 Solanum pennellii HOM05D004531 ORTHO05D005484 7.3e-58 228.0 164 70.1
Nitab4.5_0002805g0150 Nicotiana tabacum HOM05D004531 ORTHO05D005484 2.1e-57 226.5 164 70.1
SMO367G0994 Selaginella moellendorffii HOM05D004531 ORTHO05D005484 3.6e-57 225.7 230 51.3
CDE07G2032 Ceratophyllum demersum HOM05D004531 ORTHO05D005484 8.0e-57 224.6 179 64.8
Mapoly0074s0052 Marchantia polymorpha HOM05D004531 ORTHO05D005484 1.4e-53 213.8 231 51.5
FAN16G0044 Fragaria x ananassa HOM05D004531 ORTHO05D005484 2.7e-52 209.5 164 67.1
Ah.13g077510 Amaranthus hybridus HOM05D004531 ORTHO05D005484 6.0e-52 208.4 229 54.6
Hund15691 Selenicereus undatus HOM05D004531 ORTHO05D005484 7.8e-52 208.0 141 73.8
AagrBONN_evm.TU.Sc2ySwM_228.1021 Anthoceros agrestis HOM05D004531 ORTHO05D005484 1.0e-51 207.6 237 50.2
Hund22289 Selenicereus undatus HOM05D004531 ORTHO05D005484 7.3e-50 201.4 285 47.0
FAN21G3808 Fragaria x ananassa HOM05D004531 ORTHO05D005484 4.7e-49 198.7 149 69.1
Pp3c3_27620 Physcomitrium patens HOM05D004531 ORTHO05D005484 6.4e-46 188.3 234 46.6
Dinv14546 Davidia involucrata HOM05D004531 ORTHO05D005484 1.9e-45 186.8 117 77.8
ATR1096G053 Amborella trichopoda HOM05D004531 ORTHO05D005484 5.4e-45 185.3 138 64.5
MCO16G699 Micromonas commoda HOM05D004531 ORTHO05D005484 3.0e-43 179.5 243 47.3
Oeu020249.1 Olea europaea HOM05D004531 ORTHO05D005484 4.0e-40 169.1 111 74.8
CDE07G0548 Ceratophyllum demersum HOM05D004531 ORTHO05D005484 8.9e-40 167.9 139 63.3
Carub.0007s2695 Capsella rubella HOM05D004531 ORTHO05D005484 4.9e-38 162.2 176 49.4
CBR_g26482 Chara braunii HOM05D004531 ORTHO05D005484 4.1e-37 159.1 245 41.6
BraA04t15890Z Brassica rapa HOM05D004531 ORTHO05D005484 5.4e-37 158.7 139 58.3
PRCOL_00003072 Prasinoderma coloniale HOM05D004531 ORTHO05D005484 5.4e-37 158.7 266 40.2
Ca_08745_v3 Cicer arietinum L. HOM05D004531 ORTHO05D005484 7.1e-37 158.3 218 45.9
FAN25G0149 Fragaria x ananassa HOM05D004531 ORTHO05D005484 2.5e-34 149.8 118 66.1
Pp3s222_10 Physcomitrium patens HOM05D004531 ORTHO05D005484 2.8e-33 146.4 159 49.7
Cre13.g573050 Chlamydomonas reinhardtii HOM05D004531 ORTHO05D005484 8.1e-33 144.8 293 37.2
CSS0027948 Camellia sinensis var. sinensis HOM05D004531 ORTHO05D005484 8.1e-25 118.2 97 64.9
MD11G1228400 Malus domestica HOM05D004531 ORTHO05D005484 1.8e-24 117.1 122 52.5
Potri.006G026002 Populus trichocarpa HOM05D004531 ORTHO05D005484 3.1e-24 116.3 110 53.6
Psat3g051800 Pisum sativum HOM05D004531 ORTHO05D005484 1.2e-20 104.4 111 51.4
TWI38G0613 Tripterygium wilfordii HOM05D004531 ORTHO05D005484 1.0e-19 101.3 125 52.0
THA.LOC104802556 Tarenaya hassleriana HOM05D004531 ORTHO05D005484 3.9e-19 99.4 69 66.7
CDE07G1261 Ceratophyllum demersum HOM05D004531 ORTHO05D005484 5.1e-19 99.0 69 72.5
Zm00001eb262530 Zea mays HOM05D000031 ORTHO05D445172 9.6e-18 94.7 71 59.2
ECA238G1549 Erigeron canadensis HOM05D004531 ORTHO05D005484 2.2e-14 83.6 58 69.0
Gohir.A06G180400 Gossypium hirsutum HOM05D004531 ORTHO05D005484 2.2e-14 83.6 54 79.6
ATR1096G046 Amborella trichopoda HOM05D004531 ORTHO05D005484 4.9e-14 82.4 64 62.5
Zm00001eb180730 Zea mays HOM05D004531 ORTHO05D005484 8.4e-14 81.6 63 58.7
Cfa023089 Carpinus fangiana HOM05D004531 ORTHO05D005484 1.4e-13 80.9 169 37.9
PSO210G0815 Papaver somniferum HOM05D004531 ORTHO05D005484 4.2e-13 79.3 77 54.5
Haze_26248 Corylus avellana HOM05D004531 ORTHO05D005484 4.6e-12 75.9 115 40.0
SalBow8G3341 Salvia bowleyana HOM05D004531 ORTHO05D005484 7.9e-12 75.1 83 49.4
Oeu059364.1 Olea europaea HOM05D004531 ORTHO05D290784 3.3e-10 69.7 69 49.3
Oeu059360.1 Olea europaea HOM05D004531 ORTHO05D005484 2.1e-09 67.0 89 41.6
MD03G1213700 Malus domestica HOM05D004531 ORTHO05D005484 2.4e-08 63.5 48 66.7
PSO210G7246 Papaver somniferum HOM05D000014 ORTHO05D000016 1.5e-07 60.8 40 75.0
TAR633G0556 Trochodendron aralioides HOM05D004531 ORTHO05D005484 2.6e-07 60.1 38 68.4
Oeu059357.1 Olea europaea HOM05D004531 ORTHO05D005484 5.8e-07 58.9 50 52.0


User provided reference genes

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