Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.08G107200 Carya illinoinensis HOM05D004016 ORTHO05D004732 4.3e-104 381.3 194 100.0
Cfa006163 Carpinus fangiana HOM05D004016 ORTHO05D004732 4.5e-61 238.4 195 65.1
Haze_04687 Corylus avellana HOM05D004016 ORTHO05D004732 5.0e-60 235.0 180 68.9
Prupe.8G238400 Prunus persica HOM05D004016 ORTHO05D004732 1.8e-49 199.9 198 56.6
ClCG07G000350 Citrullus lanatus HOM05D004016 ORTHO05D004732 6.8e-49 198.0 187 58.3
MD11G1282800 Malus domestica HOM05D004016 ORTHO05D004732 8.9e-49 197.6 202 53.5
Cpa.g.sc487.4 Carica papaya HOM05D004016 ORTHO05D004732 1.8e-46 189.9 198 55.6
Sed0007164 Sechium edule HOM05D004016 ORTHO05D004732 2.4e-46 189.5 189 57.1
Atru.chr5.1471 Acer truncatum HOM05D004016 ORTHO05D004732 4.1e-46 188.7 191 56.5
MD03G1262100 Malus domestica HOM05D004016 ORTHO05D004732 4.1e-46 188.7 200 52.5
MELO3C014394.2 Cucumis melo HOM05D004016 ORTHO05D004732 7.0e-46 188.0 179 55.9
CsaV3_6G037200 Cucumis sativus L. HOM05D004016 ORTHO05D004732 7.0e-46 188.0 179 56.4
Ca_09744_v3 Cicer arietinum L. HOM05D004016 ORTHO05D004732 6.6e-44 181.4 179 55.3
COL.COLO4_09066 Corchorus olitorius HOM05D004016 ORTHO05D004732 8.6e-44 181.0 181 55.8
Thecc.01G275600 Theobroma cacao HOM05D004016 ORTHO05D004732 3.3e-43 179.1 186 54.8
Dinv32914 Davidia involucrata HOM05D004016 ORTHO05D004732 7.3e-43 177.9 184 56.0
Hma1.2p1_0667F.1_g199710 Hydrangea macrophylla HOM05D004016 ORTHO05D004732 1.6e-42 176.8 187 52.9
Ciclev10022155m.g Citrus clementina HOM05D004016 ORTHO05D004732 2.8e-42 176.0 207 48.3
Duzib138G0182 Durio zibethinus HOM05D004016 ORTHO05D004732 3.6e-42 175.6 197 53.3
Gohir.A08G065500 Gossypium hirsutum HOM05D004016 ORTHO05D004732 1.0e-41 174.1 181 54.1
Gorai.004G078400 Gossypium raimondii HOM05D004016 ORTHO05D004732 4.0e-41 172.2 181 53.6
FAN15G1959 Fragaria x ananassa HOM05D004016 ORTHO05D004732 6.8e-41 171.4 184 52.7
arahy.Tifrunner.gnm1.ann1.256EAD Arachis hypogaea HOM05D004016 ORTHO05D004732 8.9e-41 171.0 195 52.8
Gohir.D08G074000 Gossypium hirsutum HOM05D004016 ORTHO05D004732 8.9e-41 171.0 181 53.0
Lalb_Chr02g0142631 Lupinus albus HOM05D004016 ORTHO05D004732 8.9e-41 171.0 195 51.8
Manes.05G079900 Manihot esculenta HOM05D004016 ORTHO05D004732 8.9e-41 171.0 198 51.5
Lj1g0004863 Lotus japonicus HOM05D004016 ORTHO05D004732 1.2e-40 170.6 193 53.9
LjContig00056g0010505 Lotus japonicus HOM05D004016 ORTHO05D004732 1.2e-40 170.6 193 53.9
Sc05g0001440 Simmondsia chinensis HOM05D004016 ORTHO05D004732 1.2e-40 170.6 179 54.7
Lalb_Chr21g0306401 Lupinus albus HOM05D004016 ORTHO05D004732 1.5e-40 170.2 198 51.5
FAN20G3152 Fragaria x ananassa HOM05D004016 ORTHO05D004732 3.4e-40 169.1 189 51.3
FvH4_2g23281 Fragaria vesca HOM05D004016 ORTHO05D004732 4.4e-40 168.7 190 52.6
FAN27G2694 Fragaria x ananassa HOM05D004016 ORTHO05D004732 7.5e-40 167.9 184 51.6
Lj2E1169T0 Lonicera japonica HOM05D004016 ORTHO05D004732 9.8e-40 167.5 184 51.1
VMungo1383G1854 Vigna mungo HOM05D004016 ORTHO05D004732 9.8e-40 167.5 178 52.8
RcHm_v2.0_Chr6g0290651 Rosa chinensis HOM05D004016 ORTHO05D004732 1.3e-39 167.2 213 47.9
Lalb_Chr06g0162891 Lupinus albus HOM05D004016 ORTHO05D004732 1.7e-39 166.8 181 53.0
TWI18G0383 Tripterygium wilfordii HOM05D004016 ORTHO05D004732 1.7e-39 166.8 187 52.4
Hma1.2p1_0822F.1_g224340 Hydrangea macrophylla HOM05D004016 ORTHO05D004732 2.2e-39 166.4 183 51.4
Potri.005G211400 Populus trichocarpa HOM05D004016 ORTHO05D004732 2.2e-39 166.4 189 51.9
Duzib133G1129 Durio zibethinus HOM05D004016 ORTHO05D004732 2.9e-39 166.0 181 50.8
FAN24G3262 Fragaria x ananassa HOM05D004016 ORTHO05D004732 6.4e-39 164.9 190 52.1
Cc01_g19290 Coffea canephora HOM05D004016 ORTHO05D004732 8.3e-39 164.5 189 51.9
TAR633G2817 Trochodendron aralioides HOM05D004016 ORTHO05D004732 8.3e-39 164.5 181 53.0
Ca_08613_v3 Cicer arietinum L. HOM05D004016 ORTHO05D004732 1.9e-38 163.3 195 52.3
EL10Ac5g10544 Beta vulgaris HOM05D004016 ORTHO05D004732 3.2e-38 162.5 181 53.6
Glyma.10G027800 Glycine max HOM05D004016 ORTHO05D004732 3.2e-38 162.5 184 54.9
Phvul.001G153100 Phaseolus vulgaris HOM05D004016 ORTHO05D004732 3.2e-38 162.5 178 52.2
Glyma.02G146200 Glycine max HOM05D004016 ORTHO05D004732 1.2e-37 160.6 182 53.3
PGSC0003DMG400019358 Solanum tuberosum HOM05D004016 ORTHO05D004732 1.2e-37 160.6 190 48.4
Eucgr.H01463 Eucalyptus grandis HOM05D004016 ORTHO05D004732 2.0e-37 159.8 193 48.7
Sabra02G0041700 Salix brachista HOM05D004016 ORTHO05D004732 2.0e-37 159.8 189 49.2
Lj5g0005099 Lotus japonicus HOM05D004016 ORTHO05D004732 2.7e-37 159.5 183 52.5
Potri.002G050900 Populus trichocarpa HOM05D004016 ORTHO05D004732 4.6e-37 158.7 191 48.7
Phvul.007G173300 Phaseolus vulgaris HOM05D004016 ORTHO05D004732 7.8e-37 157.9 181 51.9
Ah.02g110900 Amaranthus hybridus HOM05D004016 ORTHO05D004732 1.3e-36 157.1 184 52.7
TWI12G1445 Tripterygium wilfordii HOM05D004016 ORTHO05D004732 2.3e-36 156.4 181 50.8
Manes.01G206100 Manihot esculenta HOM05D004016 ORTHO05D004732 3.9e-36 155.6 200 48.0
Gohir.A11G124100 Gossypium hirsutum HOM05D004016 ORTHO05D004732 8.6e-36 154.5 179 49.2
Gorai.007G138300 Gossypium raimondii HOM05D004016 ORTHO05D004732 8.6e-36 154.5 179 49.7
Sabra05G0161500 Salix brachista HOM05D004016 ORTHO05D004732 1.1e-35 154.1 185 50.3
Actinidia21126 Actinidia chinensis HOM05D004016 ORTHO05D004732 1.5e-35 153.7 186 46.8
Glyma.03G155700 Glycine max HOM05D004016 ORTHO05D004732 1.5e-35 153.7 178 52.2
Glyma.19G157800 Glycine max HOM05D004016 ORTHO05D004732 1.5e-35 153.7 179 52.5
Sopen09g027150 Solanum pennellii HOM05D004016 ORTHO05D004732 1.5e-35 153.7 188 47.9
Solyc09g065380.2 Solanum lycopersicum HOM05D004016 ORTHO05D004732 4.3e-35 152.1 186 46.8
THA.LOC104801244 Tarenaya hassleriana HOM05D004016 ORTHO05D004732 4.3e-35 152.1 196 46.9
TAR636G0684 Trochodendron aralioides HOM05D004016 ORTHO05D004732 5.6e-35 151.8 179 50.8
Gohir.D11G129300 Gossypium hirsutum HOM05D004016 ORTHO05D004732 1.6e-34 150.2 179 48.6
vmacro14911 Vaccinium macrocarpon HOM05D004016 ORTHO05D004732 3.6e-34 149.1 190 48.4
Gohir.D08G204600 Gossypium hirsutum HOM05D004016 ORTHO05D004732 4.7e-34 148.7 182 48.4
Gorai.004G216600 Gossypium raimondii HOM05D004016 ORTHO05D004732 4.7e-34 148.7 183 48.1
Lsat_1_v5_gn_8_56660 Lactuca sativa HOM05D004016 ORTHO05D004732 4.7e-34 148.7 192 48.4
MSTRG.21548 Avicennia marina HOM05D004016 ORTHO05D004732 1.1e-33 147.5 185 47.0
Migut.D00318 Erythranthe guttata HOM05D004016 ORTHO05D004732 1.8e-33 146.7 186 50.5
Hund02825 Selenicereus undatus HOM05D004016 ORTHO05D004732 8.9e-33 144.4 187 50.3
Hund27940 Selenicereus undatus HOM05D004016 ORTHO05D004732 1.2e-32 144.1 185 49.7
AUR62028601 Chenopodium quinoa HOM05D004016 ORTHO05D004732 2.0e-32 143.3 180 50.6
Nitab4.5_0002928g0010 Nicotiana tabacum HOM05D004016 ORTHO05D004732 2.6e-32 142.9 192 45.3
Sc17g0001350 Simmondsia chinensis HOM05D004016 ORTHO05D004732 2.6e-32 142.9 179 46.4
Nitab4.5_0009529g0030 Nicotiana tabacum HOM05D004016 ORTHO05D004732 3.4e-32 142.5 183 48.1
Rhsim01G0273500 Rhododendron simsii HOM05D004016 ORTHO05D004732 4.4e-32 142.1 184 47.3
Gohir.A08G186500 Gossypium hirsutum HOM05D004016 ORTHO05D004732 5.8e-32 141.7 182 48.4
MSTRG.18246 Avicennia marina HOM05D004016 ORTHO05D004732 7.5e-32 141.4 194 47.9
Actinidia24906 Actinidia chinensis HOM05D004016 ORTHO05D004732 1.3e-31 140.6 192 41.7
Oeu028065.1 Olea europaea HOM05D004016 ORTHO05D004732 1.7e-31 140.2 192 47.4
PGR044G0005 Punica granatum HOM05D004016 ORTHO05D004732 1.7e-31 140.2 182 47.8
TPR.G27140 Trifolium pratense HOM05D004016 ORTHO05D004732 1.7e-31 140.2 181 49.7
Oeu025739.1 Olea europaea HOM05D004016 ORTHO05D004732 2.2e-31 139.8 198 46.5
Oeu040656.1 Olea europaea HOM05D004016 ORTHO05D004732 2.9e-31 139.4 184 47.8
Aa31LG5G2350 Aethionema arabicum HOM05D004016 ORTHO05D004732 3.7e-31 139.0 184 47.3
Thhalv10028968m.g Eutrema salsugineum HOM05D004016 ORTHO05D004732 4.9e-31 138.7 187 46.5
HanXRQChr04g0118991 Helianthus annuus HOM05D004016 ORTHO05D004732 6.4e-31 138.3 186 43.5
Psat3g063280 Pisum sativum HOM05D004016 ORTHO05D004732 6.4e-31 138.3 179 51.4
VMungo0720G0880 Vigna mungo HOM05D004016 ORTHO05D004732 6.4e-31 138.3 165 49.1
Medtr7g095160 Medicago truncatula HOM05D004016 ORTHO05D004732 8.3e-31 137.9 174 48.9
Sopen06g035580 Solanum pennellii HOM05D004016 ORTHO05D004732 8.3e-31 137.9 200 41.5
Psat6g059840 Pisum sativum HOM05D004016 ORTHO05D004732 1.9e-30 136.7 180 47.2
CAN.G1549.22 Capsicum annuum HOM05D004016 ORTHO05D004732 2.4e-30 136.3 190 42.6
Lj1C48T4 Lonicera japonica HOM05D004016 ORTHO05D004732 4.1e-30 135.6 179 48.6
MSTRG.17454 Avicennia marina HOM05D004016 ORTHO05D004732 7.1e-30 134.8 181 48.1
CAN.G1549.21 Capsicum annuum HOM05D004016 ORTHO05D004732 1.2e-29 134.0 190 42.1
THA.LOC104825992 Tarenaya hassleriana HOM05D004016 ORTHO05D004732 1.2e-29 134.0 198 46.0
QL12p021105 Quercus lobata HOM05D004016 ORTHO05D004732 1.6e-29 133.7 222 42.8
AT4G02715 Arabidopsis thaliana HOM05D004016 ORTHO05D004732 2.1e-29 133.3 186 45.7
CARHR251020 Cardamine hirsuta HOM05D004016 ORTHO05D004732 3.5e-29 132.5 198 42.9
DCAR_002723 Daucus carota HOM05D004016 ORTHO05D004732 3.5e-29 132.5 203 40.9
Solyc06g084200.2 Solanum lycopersicum HOM05D004016 ORTHO05D004732 4.6e-29 132.1 200 40.5
PGSC0003DMG400020056 Solanum tuberosum HOM05D004016 ORTHO05D004732 4.6e-29 132.1 200 41.0
Peaxi162Scf00783g00017 Petunia axillaris HOM05D004016 ORTHO05D004732 6.0e-29 131.7 203 40.9
Peaxi162Scf01248g00010 Petunia axillaris HOM05D004016 ORTHO05D004732 1.3e-28 130.6 180 48.9
AL6G50300 Arabidopsis lyrata HOM05D004016 ORTHO05D004732 1.7e-28 130.2 187 46.0
Migut.N02038 Erythranthe guttata HOM05D004016 ORTHO05D004732 1.7e-28 130.2 184 45.7
Sp6g02620 Schrenkiella parvula HOM05D004016 ORTHO05D004732 2.3e-28 129.8 186 44.1
Carub.0006s3440 Capsella rubella HOM05D004016 ORTHO05D004732 3.0e-28 129.4 186 45.7
SGA_v2.0_scaffold138G35322 Striga asiatica HOM05D004016 ORTHO05D004732 5.1e-28 128.6 176 46.6
TPR.G24294 Trifolium pratense HOM05D004016 ORTHO05D004732 5.1e-28 128.6 152 50.7
CAN.G1549.11 Capsicum annuum HOM05D004016 ORTHO05D004732 6.6e-28 128.3 190 40.5
SGA_v2.0_scaffold1G00497 Striga asiatica HOM05D004016 ORTHO05D004732 6.6e-28 128.3 185 45.9
PSO761G0274 Papaver somniferum HOM05D004016 ORTHO05D004732 1.9e-27 126.7 195 48.7
Aqoxy2G03410 Aquilegia oxysepala HOM05D004016 ORTHO05D004732 2.5e-27 126.3 178 45.5
DCAR_018429 Daucus carota HOM05D004016 ORTHO05D004732 9.5e-27 124.4 214 37.9
BcaB05g23659 Brassica carinata HOM05D004016 ORTHO05D004732 2.1e-26 123.2 180 41.7
Aqoxy5G00450 Aquilegia oxysepala HOM05D004016 ORTHO05D004732 8.1e-26 121.3 185 44.3
BcaB01g02015 Brassica carinata HOM05D004016 ORTHO05D004732 4.0e-25 119.0 183 43.2
Nitab4.5_0008064g0020 Nicotiana tabacum HOM05D004016 ORTHO05D004732 8.9e-25 117.9 192 41.7
ECA236G1435 Erigeron canadensis HOM05D004016 ORTHO05D004732 1.2e-24 117.5 192 42.2
Nitab4.5_0005172g0030 Nicotiana tabacum HOM05D004016 ORTHO05D004732 1.3e-23 114.0 192 41.7
ClCG09G007200 Citrullus lanatus HOM05D004016 ORTHO05D004732 4.9e-23 112.1 181 40.9
PSO210G5515 Papaver somniferum HOM05D004016 ORTHO05D004732 8.4e-23 111.3 196 44.4
vmacro02591 Vaccinium macrocarpon HOM05D004016 ORTHO05D004732 2.4e-22 109.8 183 41.0
C02p39140 Brassica napus HOM05D004016 ORTHO05D004732 4.1e-22 109.0 178 41.6
Oeu013891.1 Olea europaea HOM05D004016 ORTHO05D004732 4.1e-22 109.0 199 39.7
BcaC03g16166 Brassica carinata HOM05D004016 ORTHO05D004732 7.1e-22 108.2 178 41.0
BolC2t09924H Brassica oleracea HOM05D004016 ORTHO05D004732 9.2e-22 107.8 178 41.0
Oeu034146.1 Olea europaea HOM05D004016 ORTHO05D004732 1.7e-20 103.6 184 39.1
CsaV3_7G027970 Cucumis sativus L. HOM05D004016 ORTHO05D004732 2.3e-20 103.2 180 40.0
Rhsim13G0026600 Rhododendron simsii HOM05D004016 ORTHO05D004732 2.3e-20 103.2 183 39.9
unitig_0.g129 Utricularia gibba HOM05D004016 ORTHO05D004732 3.9e-20 102.4 156 45.5
MELO3C015815.2 Cucumis melo HOM05D004016 ORTHO05D004732 5.1e-20 102.1 180 39.4
ECA247G1708 Erigeron canadensis HOM05D004016 ORTHO05D004732 5.1e-20 102.1 180 37.8
Medtr1g071810 Medicago truncatula HOM05D004016 ORTHO05D004732 6.6e-20 101.7 273 31.1
C09p02200 Brassica napus HOM05D004016 ORTHO05D004732 1.5e-19 100.5 182 38.5
HPP92_013967 Vanilla planifolia HOM05D004016 ORTHO05D004732 2.5e-19 99.8 178 38.2
Gorai.009G456000 Gossypium raimondii HOM05D004016 ORTHO05D004732 5.6e-19 98.6 127 44.1
Psat1g067520 Pisum sativum HOM05D004016 ORTHO05D004732 5.6e-19 98.6 161 40.4
BcaC04g24008 Brassica carinata HOM05D004016 ORTHO05D004732 1.2e-18 97.4 185 41.6
BolC9t53149H Brassica oleracea HOM05D004016 ORTHO05D004732 1.2e-18 97.4 185 41.6
GSVIVG01001172001 Vitis vinifera HOM05D004016 ORTHO05D004732 1.8e-17 93.6 65 64.6
A09p02110 Brassica napus HOM05D004016 ORTHO05D004732 3.1e-17 92.8 183 38.8
BraA09t35860Z Brassica rapa HOM05D004016 ORTHO05D004732 1.3e-15 87.4 182 36.3
Zm00001eb047890 Zea mays HOM05D004016 ORTHO05D004732 1.9e-14 83.6 167 36.5
ATR0697G155 Amborella trichopoda HOM05D004016 ORTHO05D004732 7.1e-14 81.6 248 29.8
Os03g0160200 Oryza sativa ssp. japonica HOM05D004016 ORTHO05D004732 1.2e-13 80.9 187 35.8
VMungo1383G2032 Vigna mungo HOM05D004016 ORTHO05D004732 1.2e-13 80.9 60 63.3
BraA02t07483Z Brassica rapa HOM05D004016 ORTHO05D004732 2.7e-13 79.7 180 37.2
Nn4g22231 Nelumbo nucifera HOM05D004016 ORTHO05D004732 3.5e-13 79.3 68 61.8
A02p24930 Brassica napus HOM05D004016 ORTHO05D004732 7.8e-13 78.2 182 36.8
Zm00001eb403300 Zea mays HOM05D004016 ORTHO05D004732 1.0e-12 77.8 183 34.4
Sed0001131 Sechium edule HOM05D004016 ORTHO05D004732 9.6e-11 71.2 183 36.1
SEGI_39625 Sequoiadendron giganteum HOM05D004016 ORTHO05D004732 9.0e-09 64.7 61 54.1
TWI75G1401 Tripterygium wilfordii HOM05D004016 ORTHO05D004732 1.3e-07 60.8 59 54.2
BcaC01g06738 Brassica carinata HOM05D004016 ORTHO05D004732 1.7e-07 60.5 49 61.2
VMungo0540G2292 Vigna mungo HOM05D004016 ORTHO05D004732 6.4e-07 58.5 100 38.0
A03p30890 Brassica napus HOM05D004016 ORTHO05D004732 1.1e-06 57.8 53 56.6
SEGI_04941 Sequoiadendron giganteum HOM05D004016 ORTHO05D004732 2.4e-06 56.6 34 70.6


User provided reference genes

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