Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.08G106300 Carya illinoinensis HOM05D003848 ORTHO05D004616 4.1e-215 751.5 497 100.0
Cfa006159 Carpinus fangiana HOM05D003848 ORTHO05D004616 2.5e-119 433.3 504 71.4
Cfa003508 Carpinus fangiana HOM05D003848 ORTHO05D004616 2.5e-116 423.3 497 67.0
Haze_16066 Corylus avellana HOM05D003848 ORTHO05D004616 6.3e-115 418.7 497 69.4
Haze_04691 Corylus avellana HOM05D003848 ORTHO05D004616 5.9e-113 412.1 503 69.8
VMungo0720G2447 Vigna mungo HOM05D003848 ORTHO05D004616 9.7e-108 394.8 507 68.4
QL01p012613 Quercus lobata HOM05D003848 ORTHO05D004616 1.2e-105 387.9 516 65.1
Potri.002G051500 Populus trichocarpa HOM05D003848 ORTHO05D004616 1.0e-104 384.8 539 65.7
Phvul.007G172800 Phaseolus vulgaris HOM05D003848 ORTHO05D004616 3.8e-104 382.9 500 68.0
Glyma.10G027400 Glycine max HOM05D003848 ORTHO05D004616 6.5e-104 382.1 507 68.4
Prupe.8G239200 Prunus persica HOM05D003848 ORTHO05D004616 8.5e-104 381.7 548 65.1
Psat4g156760 Pisum sativum HOM05D003848 ORTHO05D004616 1.1e-103 381.3 510 69.2
TWI59G1147 Tripterygium wilfordii HOM05D003848 ORTHO05D004616 4.2e-103 379.4 517 65.8
Glyma.02G146600 Glycine max HOM05D003848 ORTHO05D004616 2.1e-102 377.1 517 66.5
arahy.Tifrunner.gnm1.ann1.X3NAFX Arachis hypogaea HOM05D003848 ORTHO05D004616 1.4e-101 374.4 540 61.9
arahy.Tifrunner.gnm1.ann1.ARWK2P Arachis hypogaea HOM05D003848 ORTHO05D004616 1.8e-101 374.0 545 60.4
Lj5g0005692 Lotus japonicus HOM05D003848 ORTHO05D004616 1.8e-101 374.0 494 66.0
Cpa.g.sc52.49 Carica papaya HOM05D003848 ORTHO05D004616 5.7e-100 369.0 544 65.3
GSVIVG01001165001 Vitis vinifera HOM05D003848 ORTHO05D004616 7.4e-100 368.6 500 63.0
Thecc.01G276600 Theobroma cacao HOM05D003848 ORTHO05D004616 1.3e-99 367.9 543 63.5
COL.COLO4_09072 Corchorus olitorius HOM05D003848 ORTHO05D004616 9.1e-98 361.7 538 52.2
Lalb_Chr06g0162931 Lupinus albus HOM05D003848 ORTHO05D004616 1.6e-97 360.9 550 62.9
Gohir.A12G004500 Gossypium hirsutum HOM05D003848 ORTHO05D004616 7.7e-97 358.6 538 63.6
MD11G1283600 Malus domestica HOM05D003848 ORTHO05D004616 6.5e-96 355.5 546 63.9
Manes.05G077600 Manihot esculenta HOM05D003848 ORTHO05D004616 1.5e-95 354.4 533 62.9
FvH4_4g12190 Fragaria vesca HOM05D003848 ORTHO05D004616 5.5e-95 352.4 530 64.5
Hma1.2p1_0822F.1_g224390 Hydrangea macrophylla HOM05D003848 ORTHO05D004616 1.2e-94 351.3 472 62.1
FAN07G0259 Fragaria x ananassa HOM05D003848 ORTHO05D004616 2.1e-94 350.5 532 63.7
MD03G1262900 Malus domestica HOM05D003848 ORTHO05D004616 2.3e-93 347.1 542 63.8
Gorai.008G004000 Gossypium raimondii HOM05D003848 ORTHO05D004616 4.0e-93 346.3 605 58.5
CsaV3_3G039920 Cucumis sativus L. HOM05D003848 ORTHO05D004616 1.3e-91 341.3 550 63.1
Sabra05G0161100 Salix brachista HOM05D003848 ORTHO05D004616 1.7e-91 340.9 534 58.1
Dinv32920 Davidia involucrata HOM05D003848 ORTHO05D004616 2.8e-91 340.1 423 65.0
Gohir.D12G004200 Gossypium hirsutum HOM05D003848 ORTHO05D004616 2.8e-91 340.1 600 57.7
Ciclev10019827m.g Citrus clementina HOM05D003848 ORTHO05D004616 4.8e-91 339.3 521 63.5
Atru.chr5.1462 Acer truncatum HOM05D003848 ORTHO05D004616 1.4e-90 337.8 534 59.6
MELO3C009735.2 Cucumis melo HOM05D003848 ORTHO05D004616 1.8e-90 337.4 548 58.2
RcHm_v2.0_Chr4g0409951 Rosa chinensis HOM05D003848 ORTHO05D004616 2.4e-90 337.0 521 63.3
FAN17G2080 Fragaria x ananassa HOM05D003848 ORTHO05D004616 7.0e-90 335.5 527 63.0
Medtr8g028640 Medicago truncatula HOM05D003848 ORTHO05D004616 5.9e-89 332.4 501 63.7
Potri.005G210900 Populus trichocarpa HOM05D003848 ORTHO05D004616 1.0e-88 331.6 520 59.2
Oeu041715.2 Olea europaea HOM05D003848 ORTHO05D004616 5.0e-88 329.3 530 54.2
Nn1g02285 Nelumbo nucifera HOM05D003848 ORTHO05D004616 8.5e-88 328.6 548 59.5
PGR119G0967 Punica granatum HOM05D003848 ORTHO05D004616 8.5e-88 328.6 564 59.9
Ca_09749_v3 Cicer arietinum L. HOM05D003848 ORTHO05D004616 7.2e-87 325.5 519 62.8
Nitab4.5_0005156g0010 Nicotiana tabacum HOM05D003848 ORTHO05D004616 7.2e-87 325.5 432 65.0
Manes.01G206800 Manihot esculenta HOM05D003848 ORTHO05D004616 1.6e-86 324.3 523 54.1
ClCG10G016420 Citrullus lanatus HOM05D003848 ORTHO05D004616 4.7e-86 322.8 545 60.0
Lj2C1116T3 Lonicera japonica HOM05D003848 ORTHO05D004616 3.0e-85 320.1 531 61.2
Sopen11g029330 Solanum pennellii HOM05D003848 ORTHO05D004616 8.8e-85 318.5 546 56.0
Solyc11g071660.1 Solanum lycopersicum HOM05D003848 ORTHO05D004616 4.4e-84 316.2 546 55.7
Oeu028073.1 Olea europaea HOM05D003848 ORTHO05D004616 7.5e-84 315.5 531 55.2
TAR369G1095 Trochodendron aralioides HOM05D003848 ORTHO05D004616 2.8e-83 313.5 545 54.5
FAN22G0164 Fragaria x ananassa HOM05D003848 ORTHO05D004616 3.7e-83 313.2 512 62.7
Cc00_g04130 Coffea canephora HOM05D003848 ORTHO05D004616 4.8e-83 312.8 470 60.9
Lj1C175T4 Lonicera japonica HOM05D003848 ORTHO05D004616 4.8e-83 312.8 535 60.6
Cc01_g10690 Coffea canephora HOM05D003848 ORTHO05D004616 8.3e-83 312.0 596 53.9
Nitab4.5_0006700g0010 Nicotiana tabacum HOM05D003848 ORTHO05D004616 8.3e-83 312.0 430 68.8
Aqoxy2G03377 Aquilegia oxysepala HOM05D003848 ORTHO05D004616 1.1e-82 311.6 535 56.4
CAN.G439.4 Capsicum annuum HOM05D003848 ORTHO05D004616 1.1e-82 311.6 514 53.7
PGSC0003DMG400046756 Solanum tuberosum HOM05D003848 ORTHO05D004616 1.1e-82 311.6 549 56.6
TAR633G0718 Trochodendron aralioides HOM05D003848 ORTHO05D004616 2.4e-82 310.5 570 55.3
MBI07_g03188_MAGBIO Magnolia biondii HOM05D003848 ORTHO05D004616 3.1e-82 310.1 593 46.9
MSTRG.21553 Avicennia marina HOM05D003848 ORTHO05D004616 4.1e-82 309.7 601 49.1
SGA_v2.0_scaffold1G00491 Striga asiatica HOM05D003848 ORTHO05D004616 7.0e-82 308.9 511 61.8
HPP92_009020 Vanilla planifolia HOM05D003848 ORTHO05D004616 2.7e-81 307.0 487 51.3
QL03p072399 Quercus lobata HOM05D003848 ORTHO05D004616 3.5e-81 306.6 500 56.2
Actinidia24902 Actinidia chinensis HOM05D003848 ORTHO05D004616 3.8e-80 303.1 544 58.3
unitig_0.g1040 Utricularia gibba HOM05D003848 ORTHO05D004616 3.8e-80 303.1 523 52.6
vmacro19513 Vaccinium macrocarpon HOM05D003848 ORTHO05D004616 3.8e-80 303.1 507 59.8
Aa31LG5G2360 Aethionema arabicum HOM05D003848 ORTHO05D004616 1.1e-79 301.6 440 65.9
AT4G02720 Arabidopsis thaliana HOM05D003848 ORTHO05D004616 2.8e-78 297.0 427 67.4
ECA248G3600 Erigeron canadensis HOM05D003848 ORTHO05D004616 4.7e-78 296.2 547 53.7
Rhsim01G0273900 Rhododendron simsii HOM05D003848 ORTHO05D004616 6.1e-78 295.8 436 62.8
CANSAT01G1819 Cannabis sativa HOM05D003848 ORTHO05D004616 1.8e-77 294.3 430 63.5
HanXRQChr01g0002971 Helianthus annuus HOM05D003848 ORTHO05D004616 1.8e-77 294.3 571 52.2
vmacro18863 Vaccinium macrocarpon HOM05D003848 ORTHO05D004616 4.0e-77 293.1 500 61.4
TPR.G28157 Trifolium pratense HOM05D003848 ORTHO05D004616 8.8e-77 292.0 201 80.1
SHI27493 Sapria himalayana HOM05D004058 ORTHO05D001984 1.2e-76 291.6 198 77.3
SEGI_20713 Sequoiadendron giganteum HOM05D003848 ORTHO05D004616 2.0e-76 290.8 201 78.1
ATR0824G270 Amborella trichopoda HOM05D003848 ORTHO05D004616 3.4e-76 290.0 529 55.2
Peaxi162Scf00217g00025 Petunia axillaris HOM05D003848 ORTHO05D004616 3.4e-76 290.0 518 60.0
THA.LOC104801238 Tarenaya hassleriana HOM05D003848 ORTHO05D004616 3.4e-76 290.0 442 64.3
Carub.0006s3439 Capsella rubella HOM05D003848 ORTHO05D004616 4.4e-76 289.7 432 65.5
Sed0011367 Sechium edule HOM05D003848 ORTHO05D004616 4.4e-76 289.7 536 52.4
FAN22G1557 Fragaria x ananassa HOM05D003848 ORTHO05D004616 9.8e-76 288.5 186 82.3
CDE06G2067 Ceratophyllum demersum HOM05D003848 ORTHO05D004616 1.7e-75 287.7 483 60.9
AL6G50290 Arabidopsis lyrata HOM05D003848 ORTHO05D004616 3.7e-75 286.6 426 66.0
ATR0332G007 Amborella trichopoda HOM05D003848 ORTHO05D004616 1.1e-74 285.0 494 55.9
Sc24g0003320 Simmondsia chinensis HOM05D003848 ORTHO05D004616 1.4e-74 284.6 563 53.5
AagrBONN_evm.TU.Sc2ySwM_362.1784 Anthoceros agrestis HOM05D003848 ORTHO05D004616 2.4e-74 283.9 187 80.2
BcaB01g02014 Brassica carinata HOM05D003848 ORTHO05D004616 4.1e-74 283.1 420 59.5
THA.LOC104825995 Tarenaya hassleriana HOM05D003848 ORTHO05D004616 5.4e-74 282.7 432 65.0
Migut.D00312 Erythranthe guttata HOM05D003848 ORTHO05D004616 7.0e-74 282.3 550 54.4
Thhalv10028691m.g Eutrema salsugineum HOM05D003848 ORTHO05D004616 4.5e-73 279.6 420 65.5
Sp6g02650 Schrenkiella parvula HOM05D003848 ORTHO05D004616 1.7e-72 277.7 425 65.4
Zm00001eb314820 Zea mays HOM05D003848 ORTHO05D004616 2.3e-72 277.3 457 59.7
CARHR251050 Cardamine hirsuta HOM05D003848 ORTHO05D004616 1.9e-71 274.2 419 65.2
Ah.02g110950 Amaranthus hybridus HOM05D003848 ORTHO05D004616 1.2e-70 271.6 177 80.2
Lsat_1_v5_gn_5_184160 Lactuca sativa HOM05D003848 ORTHO05D004616 1.6e-70 271.2 553 55.5
Mapoly0051s0007 Marchantia polymorpha HOM05D003848 ORTHO05D004616 2.8e-70 270.4 171 83.0
DCAR_000720 Daucus carota HOM05D003848 ORTHO05D004616 1.0e-69 268.5 521 55.1
EL10Ac5g10556 Beta vulgaris HOM05D003848 ORTHO05D004616 2.3e-69 267.3 523 56.2
CBR_g4136 Chara braunii HOM05D003848 ORTHO05D004616 2.3e-69 267.3 163 82.8
Pp3c9_17960 Physcomitrium patens HOM05D003848 ORTHO05D004616 2.3e-69 267.3 188 75.5
BolC8t51344H Brassica oleracea HOM05D003848 ORTHO05D004616 2.0e-68 264.2 418 56.2
Duzib177G1090 Durio zibethinus HOM05D003848 ORTHO05D004616 2.2e-67 260.8 161 80.7
PSO210G3188 Papaver somniferum HOM05D003848 ORTHO05D004616 2.2e-67 260.8 500 51.8
SMO231G0049 Selaginella moellendorffii HOM05D003848 ORTHO05D004616 2.2e-67 260.8 176 76.7
SMO351G0411 Selaginella moellendorffii HOM05D003848 ORTHO05D004616 2.2e-67 260.8 176 76.7
AagrBONN_evm.TU.Sc2ySwM_344.5133 Anthoceros agrestis HOM05D003848 ORTHO05D004616 8.3e-67 258.8 154 85.1
A09p02120 Brassica napus HOM05D003848 ORTHO05D004616 8.3e-67 258.8 419 56.1
AUR62003538 Chenopodium quinoa HOM05D003848 ORTHO05D004616 8.3e-67 258.8 185 76.8
Hund11854 Selenicereus undatus HOM05D003848 ORTHO05D004616 8.3e-67 258.8 174 78.7
C08p37610 Brassica napus HOM05D003848 ORTHO05D004616 4.1e-66 256.5 416 54.6
BolC9t53150H Brassica oleracea HOM05D003848 ORTHO05D004616 7.0e-66 255.8 420 56.0
PSO832G2619 Papaver somniferum HOM05D003848 ORTHO05D004616 9.2e-66 255.4 578 50.0
BraA09t35861Z Brassica rapa HOM05D003848 ORTHO05D004616 3.5e-65 253.4 416 55.5
BcaC01g01560 Brassica carinata HOM05D003848 ORTHO05D004616 5.0e-64 249.6 180 73.3
BcaC04g24009 Brassica carinata HOM05D003848 ORTHO05D004616 5.0e-64 249.6 418 55.7
C03p93150 Brassica napus HOM05D003848 ORTHO05D004616 2.3e-61 240.7 155 80.0
C03p93080 Brassica napus HOM05D003848 ORTHO05D004616 8.9e-61 238.8 427 60.0
C03p93100 Brassica napus HOM05D003848 ORTHO05D004616 2.6e-60 237.3 418 53.8
AUR62017852 Chenopodium quinoa HOM05D003848 ORTHO05D004616 3.4e-60 236.9 500 48.4
BcaC01g01554 Brassica carinata HOM05D003848 ORTHO05D004616 9.8e-60 235.3 134 87.3
BolC3t21613H Brassica oleracea HOM05D003848 ORTHO05D004616 9.8e-60 235.3 418 53.3
C03p93070 Brassica napus HOM05D003848 ORTHO05D004616 4.9e-59 233.0 132 86.4
BcaC01g01561 Brassica carinata HOM05D003848 ORTHO05D004616 6.4e-59 232.6 416 39.4
BolC3t21610H Brassica oleracea HOM05D003848 ORTHO05D004616 5.4e-58 229.6 130 86.2
BcaC01g01558 Brassica carinata HOM05D003848 ORTHO05D004616 9.2e-58 228.8 132 84.8
A04p19390 Brassica napus HOM05D003848 ORTHO05D004616 7.8e-57 225.7 186 67.7
BraA04t17534Z Brassica rapa HOM05D003848 ORTHO05D004616 2.3e-56 224.2 198 63.6
A09p30470 Brassica napus HOM05D003848 ORTHO05D004616 3.9e-56 223.4 133 84.2
TPR.G23082 Trifolium pratense HOM05D003848 ORTHO05D004616 3.9e-56 223.4 127 89.0
C09p02210 Brassica napus HOM05D003848 ORTHO05D004616 5.0e-56 223.0 416 52.4
C09p02220 Brassica napus HOM05D003848 ORTHO05D004616 1.1e-55 221.9 423 58.4
A09p54740 Brassica napus HOM05D003848 ORTHO05D004616 1.5e-55 221.5 418 43.8
Rhsim10G0030500 Rhododendron simsii HOM05D003848 ORTHO05D004616 9.5e-55 218.8 366 57.4
CDE07G1463 Ceratophyllum demersum HOM05D003848 ORTHO05D004616 4.7e-54 216.5 184 65.2
BcaC02g08380 Brassica carinata HOM05D003848 ORTHO05D004616 3.1e-53 213.8 416 46.9
BolC4t27032H Brassica oleracea HOM05D003848 ORTHO05D004616 2.0e-52 211.1 418 55.0
arahy.Tifrunner.gnm1.ann1.3GG3GM Arachis hypogaea HOM05D004461 ORTHO05D005543 3.7e-51 206.8 416 56.2
C04p54970 Brassica napus HOM05D003848 ORTHO05D004616 8.3e-51 205.7 413 46.7
SalBow4G2167 Salvia bowleyana HOM05D003848 ORTHO05D004616 6.6e-48 196.1 190 60.5
Ca_04836_v3 Cicer arietinum L. HOM05D001515 ORTHO05D004616 4.3e-47 193.4 146 72.6
SGA_v2.0_scaffold138G35328 Striga asiatica HOM05D003848 ORTHO05D004616 6.8e-45 186.0 155 66.5
Nn4g26302 Nelumbo nucifera HOM05D003848 ORTHO05D004616 1.3e-43 181.8 101 92.1
BcaC03g13677 Brassica carinata HOM05D003848 ORTHO05D004616 9.2e-42 175.6 133 72.2
Oeu017054.1 Olea europaea HOM05D004271 ORTHO05D006011 1.2e-41 175.3 140 72.9
C03p93140 Brassica napus HOM05D003848 ORTHO05D004616 4.3e-39 166.8 377 58.1
MCO02G035 Micromonas commoda HOM05D003848 ORTHO05D004616 5.6e-39 166.4 106 79.2
BcaC03g16168 Brassica carinata HOM05D003848 ORTHO05D004616 1.6e-38 164.9 103 77.7
FAN22G1718 Fragaria x ananassa HOM05D003848 ORTHO05D004616 2.8e-38 164.1 441 56.0
Hma1.2p1_0667F.1_g199770 Hydrangea macrophylla HOM05D003848 ORTHO05D004616 9.9e-36 155.6 170 54.1
PRCOL_00001828 Prasinoderma coloniale HOM05D003848 ORTHO05D004616 2.4e-34 151.0 105 70.5
Cre01.g032250 Chlamydomonas reinhardtii HOM05D003848 ORTHO05D004616 3.9e-32 143.7 100 68.0
BraA09t40884Z Brassica rapa HOM05D003848 ORTHO05D004616 3.3e-31 140.6 84 81.0
BraA09t38617Z Brassica rapa HOM05D003848 ORTHO05D004616 1.3e-30 138.7 85 82.4
Os09g0455400 Oryza sativa ssp. japonica HOM05D003848 ORTHO05D004616 2.4e-29 134.4 70 94.3
Actinidia21120 Actinidia chinensis HOM05D003848 ORTHO05D004616 4.0e-29 133.7 176 48.9
Haze_27548 Corylus avellana HOM05D003848 ORTHO05D004616 1.5e-28 131.7 103 58.3
C02p39120 Brassica napus HOM05D003848 ORTHO05D004616 8.4e-27 125.9 85 71.8
BolC2t09922H Brassica oleracea HOM05D003848 ORTHO05D004616 2.4e-26 124.4 85 70.6
FAN22G0082 Fragaria x ananassa HOM05D003848 ORTHO05D035678 2.3e-24 117.9 212 42.9
unitig_0.g1042 Utricularia gibba HOM05D003848 ORTHO05D004616 3.9e-24 117.1 66 86.4
vmacro19512 Vaccinium macrocarpon HOM05D003848 ORTHO05D004616 4.3e-23 113.6 465 45.8
BNapus_Darmor_BZH_scaffold_38p02440 Brassica napus HOM05D003848 ORTHO05D004616 2.1e-22 111.3 68 79.4
BNapus_Darmor_BZH_scaffold_38p02460 Brassica napus HOM05D003848 ORTHO05D004616 6.2e-22 109.8 65 81.5
Lj1A173G45 Lonicera japonica HOM05D003848 ORTHO05D004616 6.9e-21 106.3 168 48.2
BolC2t06954H Brassica oleracea HOM05D003848 ORTHO05D004616 1.3e-19 102.1 69 78.3
Ca_05843_v3 Cicer arietinum L. HOM05D003848 ORTHO05D004616 1.1e-18 99.0 48 97.9
MD07G1100600 Malus domestica HOM05D003848 ORTHO05D004616 1.1e-18 99.0 56 89.3
Prupe.6G167600 Prunus persica HOM05D003848 ORTHO05D004616 1.0e-16 92.4 56 83.9
BcaC01g01557 Brassica carinata HOM05D003848 ORTHO05D004616 8.2e-14 82.8 64 67.2
C03p93060 Brassica napus HOM05D003848 ORTHO05D004616 8.2e-14 82.8 101 53.5
BraA09t40883Z Brassica rapa HOM05D003848 ORTHO05D004616 5.3e-13 80.1 101 52.5
BolC3t21614H Brassica oleracea HOM05D003848 ORTHO05D004616 1.4e-10 72.0 50 70.0
FvH4_2g11951 Fragaria vesca HOM05D003848 ORTHO05D035678 6.0e-09 66.6 57 61.4
FAN24G2199 Fragaria x ananassa HOM05D003848 ORTHO05D035678 1.1e-07 62.4 51 60.8


User provided reference genes

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