Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.08G100600 Carya illinoinensis HOM05D007879 ORTHO05D000440 3.6e-140 501.5 241 100.0
Cfa006043 Carpinus fangiana HOM05D007879 ORTHO05D000440 3.3e-69 265.8 231 58.4
Haze_04807 Corylus avellana HOM05D007879 ORTHO05D000440 9.0e-67 257.7 230 57.8
Cfa006040 Carpinus fangiana HOM05D007879 ORTHO05D000440 1.2e-66 257.3 230 57.0
QL07p015844 Quercus lobata HOM05D007879 ORTHO05D000440 1.9e-64 250.0 230 56.5
QL12p023875 Quercus lobata HOM05D007879 ORTHO05D000440 2.4e-59 233.0 231 49.8
QL07p015836 Quercus lobata HOM05D007879 ORTHO05D000440 9.0e-59 231.1 231 49.4
QL93p0358_0007 Quercus lobata HOM05D007879 ORTHO05D000440 5.1e-54 215.3 214 54.2
Dinv32989 Davidia involucrata HOM05D007879 ORTHO05D000440 8.7e-54 214.5 232 48.3
Haze_04806 Corylus avellana HOM05D007879 ORTHO05D000440 5.8e-50 201.8 233 43.8
Actinidia00702 Actinidia chinensis HOM05D007879 ORTHO05D000440 2.5e-48 196.4 232 41.4
Manes.01G213200 Manihot esculenta HOM05D007879 ORTHO05D000440 3.2e-48 196.1 238 45.0
Lalb_Chr20g0121241 Lupinus albus HOM05D007879 ORTHO05D000440 9.3e-48 194.5 234 44.4
Cfa006049 Carpinus fangiana HOM05D007879 ORTHO05D000440 4.6e-47 192.2 239 42.3
VMungo0540G1869 Vigna mungo HOM05D007879 ORTHO05D000440 5.7e-45 185.3 235 42.6
TWI59G0016 Tripterygium wilfordii HOM05D007879 ORTHO05D000440 1.4e-43 180.6 235 42.6
TWI59G0406 Tripterygium wilfordii HOM05D007879 ORTHO05D000440 2.4e-43 179.9 235 42.1
Phvul.006G176940 Phaseolus vulgaris HOM05D007879 ORTHO05D000440 4.1e-43 179.1 232 41.4
PGSC0003DMG400016851 Solanum tuberosum HOM05D007879 ORTHO05D000440 6.9e-43 178.3 231 36.8
Nitab4.5_0002011g0070 Nicotiana tabacum HOM05D007879 ORTHO05D000440 9.0e-43 177.9 231 39.0
CAN.G426.14 Capsicum annuum HOM05D007879 ORTHO05D000440 1.5e-42 177.2 234 39.3
Rhsim13G0017600 Rhododendron simsii HOM05D007879 ORTHO05D000440 3.4e-42 176.0 230 41.3
Sopen09g029230 Solanum pennellii HOM05D007879 ORTHO05D000440 4.5e-42 175.6 232 36.2
Lj6g0010361 Lotus japonicus HOM05D007879 ORTHO05D000440 2.2e-41 173.3 238 41.2
QL12p023883 Quercus lobata HOM05D007879 ORTHO05D000440 1.1e-40 171.0 214 46.3
Solyc09g074390.3 Solanum lycopersicum HOM05D007879 ORTHO05D000440 1.9e-40 170.2 232 34.9
MD11G1297700 Malus domestica HOM05D007879 ORTHO05D000440 2.5e-40 169.9 227 43.2
Gorai.004G085100 Gossypium raimondii HOM05D007879 ORTHO05D000440 4.2e-40 169.1 230 39.1
Ciclev10021313m.g Citrus clementina HOM05D007879 ORTHO05D000440 2.1e-39 166.8 230 38.3
Gohir.D08G080050 Gossypium hirsutum HOM05D007879 ORTHO05D000440 2.1e-39 166.8 230 38.7
Thecc.01G290000 Theobroma cacao HOM05D007879 ORTHO05D000440 2.7e-39 166.4 230 38.7
arahy.Tifrunner.gnm1.ann1.J3G7Y5 Arachis hypogaea HOM05D007879 ORTHO05D000440 6.1e-39 165.2 243 39.1
Peaxi162Scf00067g00024 Petunia axillaris HOM05D007879 ORTHO05D000440 1.8e-38 163.7 235 38.3
Glyma.13G230700 Glycine max HOM05D007879 ORTHO05D000440 2.3e-38 163.3 238 38.7
FAN15G1295 Fragaria x ananassa HOM05D007879 ORTHO05D000440 3.9e-38 162.5 236 42.8
RcHm_v2.0_Chr6g0292521 Rosa chinensis HOM05D007879 ORTHO05D000440 6.7e-38 161.8 246 41.9
arahy.Tifrunner.gnm1.ann1.AR7BJJ Arachis hypogaea HOM05D007879 ORTHO05D000440 8.7e-38 161.4 242 38.0
FvH4_2g24700 Fragaria vesca HOM05D007879 ORTHO05D000440 1.5e-37 160.6 236 41.5
FAN24G0183 Fragaria x ananassa HOM05D007879 ORTHO05D000440 5.7e-37 158.7 236 41.1
ECA247G0474 Erigeron canadensis HOM05D007879 ORTHO05D000440 1.3e-36 157.5 236 34.7
Lsat_1_v5_gn_9_9700 Lactuca sativa HOM05D007879 ORTHO05D000440 2.8e-36 156.4 236 35.6
Phvul.006G177000 Phaseolus vulgaris HOM05D007879 ORTHO05D000440 3.7e-36 156.0 231 38.1
Lj4g0024835 Lotus japonicus HOM05D007879 ORTHO05D000440 3.1e-35 152.9 234 37.6
Glyma.15G081900 Glycine max HOM05D007879 ORTHO05D000440 4.1e-35 152.5 233 37.8
Gohir.D12G008200 Gossypium hirsutum HOM05D007879 ORTHO05D000440 4.1e-35 152.5 233 37.3
Gorai.008G008000 Gossypium raimondii HOM05D007879 ORTHO05D000440 4.1e-35 152.5 233 37.3
PSO832G2385 Papaver somniferum HOM05D007879 ORTHO05D000440 1.5e-34 150.6 236 36.4
Gohir.A12G008500 Gossypium hirsutum HOM05D007879 ORTHO05D000440 3.4e-34 149.4 233 39.1
PSO210G5716 Papaver somniferum HOM05D007879 ORTHO05D000440 5.9e-34 148.7 236 36.9
VMungo0540G0831 Vigna mungo HOM05D007879 ORTHO05D000440 1.4e-32 144.1 214 39.3
Glyma.15G081800 Glycine max HOM05D007879 ORTHO05D000440 1.2e-31 141.0 220 40.0
FvH4_2g24391 Fragaria vesca HOM05D007879 ORTHO05D000440 6.1e-31 138.7 233 33.5
Nitab4.5_0003563g0060 Nicotiana tabacum HOM05D007879 ORTHO05D000440 1.0e-30 137.9 182 36.8
Prupe.8G252000 Prunus persica HOM05D007879 ORTHO05D000440 7.4e-29 131.7 256 35.2
FAN27G2132 Fragaria x ananassa HOM05D007879 ORTHO05D000440 1.3e-28 131.0 229 40.6
FAN20G2795 Fragaria x ananassa HOM05D007879 ORTHO05D000440 2.2e-28 130.2 235 37.4
FvH4_2g24380 Fragaria vesca HOM05D007879 ORTHO05D000440 8.2e-28 128.3 232 35.8
Medtr2g015760 Medicago truncatula HOM05D007879 ORTHO05D000440 1.1e-27 127.9 230 30.4
FAN27G1010 Fragaria x ananassa HOM05D007879 ORTHO05D000440 9.1e-27 124.8 231 31.6
FAN15G2055 Fragaria x ananassa HOM05D007879 ORTHO05D000440 5.9e-26 122.1 224 29.9
FAN15G3739 Fragaria x ananassa HOM05D007879 ORTHO05D000440 5.9e-26 122.1 224 29.9
HanXRQChr10g0281401 Helianthus annuus HOM05D007879 ORTHO05D000440 2.9e-25 119.8 234 31.6
FvH4_2g24390 Fragaria vesca HOM05D007879 ORTHO05D000440 2.5e-24 116.7 236 32.2
FvH4_2g24410 Fragaria vesca HOM05D007879 ORTHO05D000440 1.8e-22 110.5 236 30.5
FvH4_2g24690 Fragaria vesca HOM05D007879 ORTHO05D000440 2.3e-22 110.2 135 46.7
arahy.Tifrunner.gnm1.ann1.4C4IKF Arachis hypogaea HOM05D007879 ORTHO05D000440 5.3e-19 99.0 92 50.0
COL.COLO4_08033 Corchorus olitorius HOM05D000182 ORTHO05D000112 9.1e-19 98.2 143 37.8
FAN15G1025 Fragaria x ananassa HOM05D007879 ORTHO05D000440 7.7e-18 95.1 210 30.5
FAN15G1476 Fragaria x ananassa HOM05D007879 ORTHO05D000440 7.7e-18 95.1 210 30.5
Oeu057554.1 Olea europaea HOM05D007879 ORTHO05D000440 2.9e-17 93.2 120 36.7
RcHm_v2.0_Chr6g0292531 Rosa chinensis HOM05D007879 ORTHO05D000440 1.1e-16 91.3 156 36.5
FAN27G0844 Fragaria x ananassa HOM05D007879 ORTHO05D000440 6.3e-12 75.5 99 37.4
Prupe.8G252900 Prunus persica HOM05D001286 ORTHO05D000440 6.3e-12 75.5 126 33.3
Prupe.4G274600 Prunus persica HOM05D007879 ORTHO05D000440 1.8e-11 73.9 189 31.2
Rhsim03G0050800 Rhododendron simsii HOM05D007879 ORTHO05D000440 1.6e-10 70.9 73 46.6
Rhsim03G0050700 Rhododendron simsii HOM05D007879 ORTHO05D000440 3.5e-10 69.7 81 43.2
Ah.08g210520 Amaranthus hybridus HOM05D001286 ORTHO05D000440 2.2e-09 67.0 151 27.8
TAR636G2415 Trochodendron aralioides HOM05D001286 ORTHO05D000440 1.1e-08 64.7 132 28.8
EL10Ac7g16907 Beta vulgaris HOM05D001286 ORTHO05D000440 1.9e-08 63.9 151 26.5
Lj5g0005331 Lotus japonicus HOM05D001286 ORTHO05D000440 2.5e-08 63.5 225 23.1
TAR376G1185 Trochodendron aralioides HOM05D001286 ORTHO05D000440 2.5e-08 63.5 127 27.6
vmacro19720 Vaccinium macrocarpon HOM05D001286 ORTHO05D000440 2.5e-08 63.5 147 29.3
MSTRG.19268 Avicennia marina HOM05D001286 ORTHO05D000440 3.2e-08 63.2 151 24.5
FvH4_2g24671 Fragaria vesca HOM05D007879 ORTHO05D000440 3.2e-08 63.2 152 28.9
Medtr1g059840 Medicago truncatula HOM05D001286 ORTHO05D000440 4.2e-08 62.8 151 23.8
Oeu047204.1 Olea europaea HOM05D001286 ORTHO05D000440 5.5e-08 62.4 94 33.0
CSS0048691 Camellia sinensis var. sinensis HOM05D001286 ORTHO05D000440 7.2e-08 62.0 151 25.8
PSO210G0943 Papaver somniferum HOM05D001286 ORTHO05D000440 7.2e-08 62.0 138 29.7
TAR376G0082 Trochodendron aralioides HOM05D001286 ORTHO05D000440 7.2e-08 62.0 127 27.6
Rhsim01G0011200 Rhododendron simsii HOM05D001286 ORTHO05D000440 9.4e-08 61.6 185 28.1
TAR636G1022 Trochodendron aralioides HOM05D001286 ORTHO05D000440 9.4e-08 61.6 141 27.7
Atru.chr2.465 Acer truncatum HOM05D001286 ORTHO05D000440 1.2e-07 61.2 148 31.1
AUR62037031 Chenopodium quinoa HOM05D001286 ORTHO05D000440 1.2e-07 61.2 151 25.8
Ca_00899_v3 Cicer arietinum L. HOM05D001286 ORTHO05D000440 1.2e-07 61.2 151 24.5
AUR62006191 Chenopodium quinoa HOM05D001286 ORTHO05D000440 1.6e-07 60.8 151 25.8
Glyma.10G073700 Glycine max HOM05D001286 ORTHO05D000440 1.6e-07 60.8 151 24.5
QL07p038675 Quercus lobata HOM05D001286 ORTHO05D000440 1.6e-07 60.8 151 25.2
Sc20g0006330 Simmondsia chinensis HOM05D001286 ORTHO05D000440 1.6e-07 60.8 151 27.2
TPR.G9893 Trifolium pratense HOM05D001286 ORTHO05D000440 1.6e-07 60.8 151 24.5
TAR636G2857 Trochodendron aralioides HOM05D001286 ORTHO05D000440 1.6e-07 60.8 135 30.4
Gohir.A08G212150 Gossypium hirsutum HOM05D001286 ORTHO05D000440 2.1e-07 60.5 82 31.7
Rhsim08G0205000 Rhododendron simsii HOM05D001286 ORTHO05D000440 2.7e-07 60.1 91 38.5
Atru.chr8.1486 Acer truncatum HOM05D001286 ORTHO05D000440 3.6e-07 59.7 151 24.5
PSO210G1288 Papaver somniferum HOM05D001286 ORTHO05D000440 3.6e-07 59.7 134 28.4
AL6G44750 Arabidopsis lyrata HOM05D001286 ORTHO05D000440 4.7e-07 59.3 93 33.3
Dinv31694 Davidia involucrata HOM05D001286 ORTHO05D000440 4.7e-07 59.3 151 25.8
Glyma.13G154400 Glycine max HOM05D001286 ORTHO05D000440 4.7e-07 59.3 151 23.8
Manes.08G026100 Manihot esculenta HOM05D001286 ORTHO05D000440 4.7e-07 59.3 151 26.5
Oeu025671.3 Olea europaea HOM05D001286 ORTHO05D000440 4.7e-07 59.3 148 23.6
Rhsim08G0205300 Rhododendron simsii HOM05D001286 ORTHO05D000440 4.7e-07 59.3 91 38.5
Sp6g05180 Schrenkiella parvula HOM05D001286 ORTHO05D000440 4.7e-07 59.3 94 34.0
Hund03994 Selenicereus undatus HOM05D001286 ORTHO05D000440 4.7e-07 59.3 151 26.5
TAR636G3329 Trochodendron aralioides HOM05D001286 ORTHO05D000440 4.7e-07 59.3 127 29.1
ECA236G4173 Erigeron canadensis HOM05D001286 ORTHO05D000440 6.1e-07 58.9 225 22.2
Prupe.7G109000 Prunus persica HOM05D001286 ORTHO05D000440 6.1e-07 58.9 151 23.8
Nn1g05876 Nelumbo nucifera HOM05D001286 ORTHO05D000440 8.0e-07 58.5 124 31.5
PSO210G3833 Papaver somniferum HOM05D003035 ORTHO05D000440 8.0e-07 58.5 184 29.9
PSO732G0047 Papaver somniferum HOM05D003035 ORTHO05D000440 8.0e-07 58.5 121 30.6
VMungo1383G3108 Vigna mungo HOM05D001286 ORTHO05D000440 8.0e-07 58.5 152 25.7
CiPaw.10G010500 Carya illinoinensis HOM05D001286 ORTHO05D000440 1.0e-06 58.2 151 24.5
COL.COLO4_29718 Corchorus olitorius HOM05D001286 ORTHO05D000440 1.0e-06 58.2 154 23.4
Nitab4.5_0008240g0020 Nicotiana tabacum HOM05D007879 ORTHO05D000440 1.0e-06 58.2 72 37.5
Psat6g080440 Pisum sativum HOM05D001286 ORTHO05D000440 1.0e-06 58.2 151 23.8
Potri.006G212600 Populus trichocarpa HOM05D001286 ORTHO05D000440 1.0e-06 58.2 151 23.2
Cfa016618 Carpinus fangiana HOM05D001286 ORTHO05D000440 1.4e-06 57.8 151 23.8
Lsat_1_v5_gn_5_165000 Lactuca sativa HOM05D001286 ORTHO05D000440 1.4e-06 57.8 225 22.7
Psat3g032440 Pisum sativum HOM05D001286 ORTHO05D000440 1.4e-06 57.8 95 31.6
Ah.15g090840 Amaranthus hybridus HOM05D001286 ORTHO05D000440 1.8e-06 57.4 151 24.5
MBI14_g22986_MAGBIO Magnolia biondii HOM05D001286 ORTHO05D000440 1.8e-06 57.4 157 24.8
Potri.016G079300 Populus trichocarpa HOM05D001286 ORTHO05D000440 1.8e-06 57.4 151 23.2
Rhsim01G0011000 Rhododendron simsii HOM05D001286 ORTHO05D000440 1.8e-06 57.4 186 29.0
Sabra06G0163600 Salix brachista HOM05D001286 ORTHO05D000440 1.8e-06 57.4 151 23.2
Duzib106G1385 Durio zibethinus HOM05D001286 ORTHO05D000440 2.3e-06 57.0 152 23.0
Sp6g05200 Schrenkiella parvula HOM05D001286 ORTHO05D000440 2.3e-06 57.0 94 34.0
Rhsim01G0045800 Rhododendron simsii HOM05D001286 ORTHO05D000440 3.0e-06 56.6 91 35.2
TAR628G1131 Trochodendron aralioides HOM05D001286 ORTHO05D000440 3.0e-06 56.6 124 28.2
PGSC0003DMG400008951 Solanum tuberosum HOM05D001286 ORTHO05D000440 4.0e-06 56.2 151 23.2
Gohir.D08G228850 Gossypium hirsutum HOM05D001286 ORTHO05D000440 5.2e-06 55.8 82 30.5
Gorai.004G243200 Gossypium raimondii HOM05D001286 ORTHO05D000440 5.2e-06 55.8 82 30.5
PSO210G5554 Papaver somniferum HOM05D003035 ORTHO05D000440 5.2e-06 55.8 124 34.7
Phvul.001G190800 Phaseolus vulgaris HOM05D001286 ORTHO05D000440 5.2e-06 55.8 92 29.3
TAR374G0203 Trochodendron aralioides HOM05D001286 ORTHO05D000440 5.2e-06 55.8 117 27.4
CAN.G397.56 Capsicum annuum HOM05D001286 ORTHO05D000440 6.8e-06 55.5 151 22.5
Duzib106G0631 Durio zibethinus HOM05D001286 ORTHO05D000440 6.8e-06 55.5 110 30.9
PSO541G3776 Papaver somniferum HOM05D003035 ORTHO05D000440 6.8e-06 55.5 91 29.7
Rhsim08G0204600 Rhododendron simsii HOM05D001286 ORTHO05D000440 6.8e-06 55.5 91 36.3
Solyc09g009880.3 Solanum lycopersicum HOM05D001286 ORTHO05D000440 6.8e-06 55.5 151 22.5
Ciclev10011976m.g Citrus clementina HOM05D001286 ORTHO05D000440 8.8e-06 55.1 151 23.8
Sopen09g004630 Solanum pennellii HOM05D001286 ORTHO05D000440 8.8e-06 55.1 151 22.5


User provided reference genes

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