Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.08G100100 Carya illinoinensis HOM05D008278 ORTHO05D009926 1.8e-51 205.7 109 100.0
CiPaw.07G100700 Carya illinoinensis HOM05D008278 ORTHO05D009926 3.1e-19 98.6 47 91.5
COL.COLO4_08021 Corchorus olitorius HOM05D008278 ORTHO05D009926 3.5e-18 95.1 48 85.4
Duzib138G1619 Durio zibethinus HOM05D008278 ORTHO05D009926 1.9e-16 89.4 47 85.1
Thecc.01G291200 Theobroma cacao HOM05D008278 ORTHO05D009926 7.3e-16 87.4 43 90.7
Lj1g0017232 Lotus japonicus HOM05D008278 ORTHO05D009926 3.6e-15 85.1 65 70.8
MD03G1276800 Malus domestica HOM05D008278 ORTHO05D009926 3.6e-15 85.1 48 79.2
Psat0s1883g0120 Pisum sativum HOM05D008278 ORTHO05D009926 6.1e-15 84.3 81 75.3
RcHm_v2.0_Chr6g0292641 Rosa chinensis HOM05D008278 ORTHO05D009926 1.4e-14 83.2 40 82.5
Hma1.2p1_0209F.1_g089030 Hydrangea macrophylla HOM05D008278 ORTHO05D009926 1.8e-14 82.8 47 76.6
Prupe.8G253200 Prunus persica HOM05D008278 ORTHO05D009926 4.0e-14 81.6 43 79.1
Actinidia21077 Actinidia chinensis HOM05D008278 ORTHO05D009926 6.8e-14 80.9 40 80.0
Actinidia24853 Actinidia chinensis HOM05D008278 ORTHO05D009926 6.8e-14 80.9 43 76.7
Psat3g024600 Pisum sativum HOM05D008278 ORTHO05D009926 3.4e-13 78.6 81 70.4
Gohir.A11G117700 Gossypium hirsutum HOM05D008278 ORTHO05D009926 5.8e-13 77.8 47 76.6
Gorai.007G131400 Gossypium raimondii HOM05D008278 ORTHO05D009926 5.8e-13 77.8 47 76.6
Medtr7g108080 Medicago truncatula HOM05D008278 ORTHO05D009926 9.8e-13 77.0 47 74.5
Gohir.D11G122600 Gossypium hirsutum HOM05D008278 ORTHO05D009926 1.7e-12 76.3 39 84.6
Glyma.19G206602 Glycine max HOM05D008278 ORTHO05D009926 2.2e-12 75.9 89 59.6
FvH4_2g24810 Fragaria vesca HOM05D008278 ORTHO05D009926 6.4e-12 74.3 47 72.3
FAN24G0745 Fragaria x ananassa HOM05D008278 ORTHO05D009926 6.4e-12 74.3 47 72.3
Sc24g0003970 Simmondsia chinensis HOM05D008278 ORTHO05D009926 8.3e-12 73.9 45 71.1
Glyma.03G209200 Glycine max HOM05D008278 ORTHO05D009926 5.4e-11 71.2 33 81.8
PGR119G0374 Punica granatum HOM05D008278 ORTHO05D009926 9.2e-11 70.5 69 63.8
Manes.01G214200 Manihot esculenta HOM05D008278 ORTHO05D009926 1.2e-10 70.1 46 67.4
QL12p024203 Quercus lobata HOM05D008278 ORTHO05D009926 1.6e-10 69.7 34 82.4
Ciclev10023989m.g Citrus clementina HOM05D008278 ORTHO05D009926 2.0e-10 69.3 44 70.5
vmacro08204 Vaccinium macrocarpon HOM05D008278 ORTHO05D009926 4.6e-10 68.2 82 58.5
TWI09G1464 Tripterygium wilfordii HOM05D008278 ORTHO05D009926 6.0e-10 67.8 46 60.9
Cc01_g20290 Coffea canephora HOM05D008278 ORTHO05D009926 7.8e-10 67.4 85 56.5
Thecc.04G277500 Theobroma cacao HOM05D008278 ORTHO05D009926 1.0e-09 67.0 41 70.7
Aqoxy5G00615 Aquilegia oxysepala HOM05D008278 ORTHO05D009926 1.3e-09 66.6 71 57.7
Cc03_g02370 Coffea canephora HOM05D008278 ORTHO05D009926 1.3e-09 66.6 41 63.4
Phvul.001G202500 Phaseolus vulgaris HOM05D008278 ORTHO05D009926 2.3e-09 65.9 48 64.6
FvH4_2g24820 Fragaria vesca HOM05D008278 ORTHO05D009926 8.6e-09 63.9 37 70.3
TWI59G0540 Tripterygium wilfordii HOM05D008278 ORTHO05D009926 8.6e-09 63.9 33 75.8
FAN20G2599 Fragaria x ananassa HOM05D008278 ORTHO05D009926 1.5e-08 63.2 37 67.6
TWI14G0577 Tripterygium wilfordii HOM05D008278 ORTHO05D009926 1.5e-08 63.2 33 75.8
Duzib151G0456 Durio zibethinus HOM05D008278 ORTHO05D009926 1.9e-08 62.8 41 65.9
Carub.0004s3061 Capsella rubella HOM05D008278 ORTHO05D009926 4.3e-08 61.6 42 64.3
CiPaw.02G086800 Carya illinoinensis HOM05D008278 ORTHO05D009926 4.3e-08 61.6 52 55.8
Eucgr.H03768 Eucalyptus grandis HOM05D008278 ORTHO05D009926 4.3e-08 61.6 35 65.7
FAN15G3558 Fragaria x ananassa HOM05D008278 ORTHO05D009926 5.6e-08 61.2 35 71.4
Dinv32998 Davidia involucrata HOM05D000003 ORTHO05D000126 7.3e-08 60.8 40 65.0
PSO170G0879 Papaver somniferum HOM05D008278 ORTHO05D009926 1.2e-07 60.1 66 60.6
Manes.09G159200 Manihot esculenta HOM05D008278 ORTHO05D009926 1.6e-07 59.7 73 47.9
Manes.03G191100 Manihot esculenta HOM05D008278 ORTHO05D009926 2.1e-07 59.3 31 77.4
CSS0040059 Camellia sinensis var. sinensis HOM05D008278 ORTHO05D009926 2.8e-07 58.9 73 58.9
Dinv04275 Davidia involucrata HOM05D008278 ORTHO05D009926 2.8e-07 58.9 62 53.2
Thhalv10001693m.g Eutrema salsugineum HOM05D008278 ORTHO05D009926 6.2e-07 57.8 42 61.9
Glyma.13G215100 Glycine max HOM05D008278 ORTHO05D009926 6.2e-07 57.8 42 61.9
GSVIVG01021911001 Vitis vinifera HOM05D008278 ORTHO05D009926 6.2e-07 57.8 77 61.0
QL06p007372 Quercus lobata HOM05D008278 ORTHO05D009926 8.0e-07 57.4 31 74.2
LjContig00389g0012701 Lotus japonicus HOM05D008278 ORTHO05D009926 1.1e-06 57.0 42 61.9
Rhsim01G0280400 Rhododendron simsii HOM05D008278 ORTHO05D009926 1.1e-06 57.0 59 49.2
COL.COLO4_13623 Corchorus olitorius HOM05D008278 ORTHO05D009926 1.8e-06 56.2 77 44.2
Phvul.006G097300 Phaseolus vulgaris HOM05D008278 ORTHO05D009926 1.8e-06 56.2 73 64.4
vmacro14967 Vaccinium macrocarpon HOM05D008278 ORTHO05D009926 3.1e-06 55.5 33 66.7
COL.COLO4_13930 Corchorus olitorius HOM05D008278 ORTHO05D009926 6.8e-06 54.3 28 71.4
Gohir.A11G257700 Gossypium hirsutum HOM05D010912 ORTHO05D009926 6.8e-06 54.3 76 42.1
Thecc.05G292500 Theobroma cacao HOM05D008278 ORTHO05D009926 8.9e-06 53.9 76 44.7


User provided reference genes

Program Settings