Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.08G097300 Carya illinoinensis HOM05D003821 ORTHO05D004449 1.1e-41 172.9 90 100.0
CiPaw.07G106400 Carya illinoinensis HOM05D003821 ORTHO05D004449 8.9e-36 153.3 87 90.8
Psat3g022560 Pisum sativum HOM05D003821 ORTHO05D004449 5.6e-30 134.0 85 78.8
Ca_10352_v3 Cicer arietinum L. HOM05D003821 ORTHO05D004449 2.1e-29 132.1 90 77.8
QL10p053326 Quercus lobata HOM05D003821 ORTHO05D004449 6.2e-29 130.6 105 67.6
QL10p054532 Quercus lobata HOM05D003821 ORTHO05D004449 6.2e-29 130.6 105 67.6
Haze_04896 Corylus avellana HOM05D003821 ORTHO05D004449 3.1e-28 128.3 108 69.4
Manes.15G012400 Manihot esculenta HOM05D003821 ORTHO05D004449 8.9e-28 126.7 88 73.9
Medtr1g088760 Medicago truncatula HOM05D003821 ORTHO05D004449 3.4e-27 124.8 116 62.1
TWI09G0102 Tripterygium wilfordii HOM05D003821 ORTHO05D004449 3.4e-27 124.8 80 80.0
AL7G39490 Arabidopsis lyrata HOM05D003821 ORTHO05D004449 4.4e-27 124.4 79 79.7
AT4G15802 Arabidopsis thaliana HOM05D003821 ORTHO05D004449 4.4e-27 124.4 79 79.7
Sed0001615 Sechium edule HOM05D003821 ORTHO05D004449 1.3e-26 122.9 103 66.0
CARHR290310 Cardamine hirsuta HOM05D003821 ORTHO05D004449 1.7e-26 122.5 79 78.5
Migut.G00164 Erythranthe guttata HOM05D003821 ORTHO05D004449 2.2e-26 122.1 86 74.4
Carub.0007s2585 Capsella rubella HOM05D003821 ORTHO05D004449 3.7e-26 121.3 79 79.7
Oeu027727.1 Olea europaea HOM05D003821 ORTHO05D004449 3.7e-26 121.3 86 72.1
TWI53G1984 Tripterygium wilfordii HOM05D003821 ORTHO05D004449 3.7e-26 121.3 80 77.5
Phvul.009G247900 Phaseolus vulgaris HOM05D003821 ORTHO05D004449 4.1e-25 117.9 78 75.6
TPR.G33980 Trifolium pratense HOM05D003821 ORTHO05D004449 4.1e-25 117.9 106 64.2
TPR.G9594 Trifolium pratense HOM05D003821 ORTHO05D004449 5.4e-25 117.5 115 60.0
Hma1.2p1_0078F.1_g040550 Hydrangea macrophylla HOM05D003821 ORTHO05D004449 9.2e-25 116.7 83 73.5
MSTRG.3917 Avicennia marina HOM05D003821 ORTHO05D004449 1.2e-24 116.3 86 70.9
Oeu026313.1 Olea europaea HOM05D003821 ORTHO05D004449 1.6e-24 115.9 80 75.0
Thecc.04G284600 Theobroma cacao HOM05D003821 ORTHO05D004449 3.5e-24 114.8 86 68.6
Nn4g25849 Nelumbo nucifera HOM05D003821 ORTHO05D004449 7.8e-24 113.6 86 66.3
MSTRG.24794 Avicennia marina HOM05D003821 ORTHO05D004449 1.0e-23 113.2 85 67.1
Rhsim02G0009100 Rhododendron simsii HOM05D003821 ORTHO05D004449 1.3e-23 112.8 102 60.8
CANSAT78G0465 Cannabis sativa HOM05D003821 ORTHO05D004449 5.6e-22 107.5 79 68.4
Gorai.004G142200 Gossypium raimondii HOM05D003821 ORTHO05D004449 9.5e-22 106.7 130 50.0
BcaB04g18333 Brassica carinata HOM05D003821 ORTHO05D004449 2.1e-21 105.5 83 69.9
Actinidia32231 Actinidia chinensis HOM05D003821 ORTHO05D004449 4.7e-21 104.4 88 67.0
BraA01t02079Z Brassica rapa HOM05D000802 ORTHO05D013138 4.7e-21 104.4 95 64.2
RcHm_v2.0_Chr6g0293541 Rosa chinensis HOM05D003821 ORTHO05D004449 4.7e-21 104.4 111 55.9
Gohir.D08G138600 Gossypium hirsutum HOM05D003821 ORTHO05D004449 6.2e-21 104.0 90 62.2
BraA08t33190Z Brassica rapa HOM05D003821 ORTHO05D004449 8.1e-21 103.6 97 61.9
BolC7t45268H Brassica oleracea HOM05D003821 ORTHO05D004449 1.1e-20 103.2 83 68.7
BraA03t14035Z Brassica rapa HOM05D003821 ORTHO05D004449 1.4e-20 102.8 82 69.5
Ciclev10007067m.g Citrus clementina HOM05D003821 ORTHO05D004449 1.4e-20 102.8 131 49.6
FvH4_4g18020 Fragaria vesca HOM05D003821 ORTHO05D004449 3.1e-20 101.7 88 61.4
TWI79G0264 Tripterygium wilfordii HOM05D003821 ORTHO05D004449 5.2e-20 100.9 75 69.3
ClCG09G006050 Citrullus lanatus HOM05D003821 ORTHO05D004449 6.8e-20 100.5 86 66.3
Os06g0274000 Oryza sativa ssp. japonica HOM05D003821 ORTHO05D004449 2.0e-19 99.0 84 65.5
Nitab4.5_0000191g0110 Nicotiana tabacum HOM05D003821 ORTHO05D004449 3.4e-19 98.2 114 50.9
Atru.chr4.2835 Acer truncatum HOM05D003821 ORTHO05D004449 9.9e-19 96.7 135 43.7
Cpa.g.sc9.208 Carica papaya HOM05D003821 ORTHO05D004449 1.3e-18 96.3 106 57.5
FvH4_2g25350 Fragaria vesca HOM05D003821 ORTHO05D004449 1.7e-18 95.9 90 57.8
FAN12G1096 Fragaria x ananassa HOM05D003821 ORTHO05D004449 2.2e-18 95.5 88 59.1
Gohir.A08G117600 Gossypium hirsutum HOM05D003821 ORTHO05D004449 2.2e-18 95.5 90 58.9
Haze_01204 Corylus avellana HOM05D003821 ORTHO05D004449 4.9e-18 94.4 105 52.4
FAN15G2810 Fragaria x ananassa HOM05D003821 ORTHO05D004449 4.9e-18 94.4 90 58.9
FAN24G2279 Fragaria x ananassa HOM05D003821 ORTHO05D004449 4.9e-18 94.4 92 58.7
EL10Ac7g17441 Beta vulgaris HOM05D003821 ORTHO05D004449 8.4e-18 93.6 124 50.0
A03p49340 Brassica napus HOM05D003821 ORTHO05D004449 1.1e-17 93.2 83 63.9
AUR62033168 Chenopodium quinoa HOM05D003821 ORTHO05D004449 1.1e-17 93.2 88 58.0
AUR62008616 Chenopodium quinoa HOM05D003821 ORTHO05D004449 2.4e-17 92.0 88 58.0
arahy.Tifrunner.gnm1.ann1.UD53LE Arachis hypogaea HOM05D003821 ORTHO05D004449 4.2e-17 91.3 90 63.3
COL.COLO4_13871 Corchorus olitorius HOM05D003821 ORTHO05D004449 4.2e-17 91.3 93 54.8
FAN27G2508 Fragaria x ananassa HOM05D003821 ORTHO05D004449 5.4e-17 90.9 92 56.5
Sc24g0003850 Simmondsia chinensis HOM05D000714 ORTHO05D000544 5.4e-17 90.9 90 62.2
Potri.014G131701 Populus trichocarpa HOM05D003821 ORTHO05D004449 7.1e-17 90.5 81 61.7
FAN20G2567 Fragaria x ananassa HOM05D000897 ORTHO05D000716 9.2e-17 90.1 91 57.1
CANSAT25G1361 Cannabis sativa HOM05D003821 ORTHO05D004449 1.2e-16 89.7 90 54.4
THA.LOC104820264 Tarenaya hassleriana HOM05D003821 ORTHO05D004449 1.2e-16 89.7 88 60.2
ATR0580G132 Amborella trichopoda HOM05D003821 ORTHO05D004449 1.6e-16 89.4 96 59.4
FAN07G0841 Fragaria x ananassa HOM05D003821 ORTHO05D004449 2.1e-16 89.0 90 56.7
A01p21700 Brassica napus HOM05D000802 ORTHO05D013138 1.0e-15 86.7 79 64.6
Gorai.007G237400 Gossypium raimondii HOM05D003821 ORTHO05D004449 1.0e-15 86.7 85 58.8
SGA_v2.0_scaffold147G36288 Striga asiatica HOM05D003821 ORTHO05D004449 1.0e-15 86.7 86 57.0
arahy.Tifrunner.gnm1.ann1.LH51N9 Arachis hypogaea HOM05D003821 ORTHO05D004449 1.7e-15 85.9 101 55.4
BcaC06g32965 Brassica carinata HOM05D003821 ORTHO05D004449 1.7e-15 85.9 79 62.0
Manes.05G064201 Manihot esculenta HOM05D003821 ORTHO05D004449 1.7e-15 85.9 60 75.0
SGA_v2.0_scaffold91G27999 Striga asiatica HOM05D003821 ORTHO05D004449 1.7e-15 85.9 115 49.6
CAN.G185.14 Capsicum annuum HOM05D003821 ORTHO05D004449 2.3e-15 85.5 79 60.8
DCAR_002813 Daucus carota HOM05D003821 ORTHO05D004449 2.3e-15 85.5 90 56.7
VMungo1309G1076 Vigna mungo HOM05D003821 ORTHO05D004449 2.3e-15 85.5 80 57.5
BcaC06g33446 Brassica carinata HOM05D003821 ORTHO05D004449 3.9e-15 84.7 79 63.3
vmacro08148 Vaccinium macrocarpon HOM05D003821 ORTHO05D004449 3.9e-15 84.7 151 38.4
Ciclev10023083m.g Citrus clementina HOM05D003821 ORTHO05D004449 8.7e-15 83.6 90 55.6
CsaV3_7G029090 Cucumis sativus L. HOM05D003821 ORTHO05D004449 1.5e-14 82.8 89 56.2
Zm00001eb380410 Zea mays HOM05D003821 ORTHO05D004449 1.9e-14 82.4 65 67.7
BcaNung00244 Brassica carinata HOM05D000802 ORTHO05D013138 2.5e-14 82.0 79 62.0
Prupe.1G136900 Prunus persica HOM05D003821 ORTHO05D004449 2.5e-14 82.0 76 59.2
Thecc.01G297100 Theobroma cacao HOM05D003821 ORTHO05D004449 2.5e-14 82.0 90 53.3
Gohir.A10G164000 Gossypium hirsutum HOM05D003821 ORTHO05D004449 4.3e-14 81.3 67 62.7
CSS0027872 Camellia sinensis var. sinensis HOM05D003821 ORTHO05D004449 5.6e-14 80.9 95 53.7
SGA_v2.0_scaffold428G51522 Striga asiatica HOM05D003821 ORTHO05D004449 5.6e-14 80.9 85 54.1
Gohir.D11G223400 Gossypium hirsutum HOM05D003821 ORTHO05D004449 7.3e-14 80.5 64 65.6
TAR365G0642 Trochodendron aralioides HOM05D003821 ORTHO05D004449 7.3e-14 80.5 88 51.1
Lj5g0023739 Lotus japonicus HOM05D003821 ORTHO05D004449 9.6e-14 80.1 90 54.4
Manes.01G217100 Manihot esculenta HOM05D003821 ORTHO05D004449 9.6e-14 80.1 90 55.6
Peaxi162Scf00048g00209 Petunia axillaris HOM05D003821 ORTHO05D004449 1.2e-13 79.7 71 63.4
Psat6g166600 Pisum sativum HOM05D003821 ORTHO05D004449 1.6e-13 79.3 90 53.3
Prupe.8G258100 Prunus persica HOM05D003821 ORTHO05D004449 1.6e-13 79.3 90 51.1
BcaC07g37933 Brassica carinata HOM05D003821 ORTHO05D004449 2.1e-13 79.0 80 58.8
FAN17G0959 Fragaria x ananassa HOM05D003821 ORTHO05D004449 2.1e-13 79.0 84 54.8
Nitab4.5_0000570g0120 Nicotiana tabacum HOM05D003821 ORTHO05D004449 2.1e-13 79.0 87 50.6
A08p11990 Brassica napus HOM05D003821 ORTHO05D004449 4.7e-13 77.8 80 55.0
Ah.04g153550 Amaranthus hybridus HOM05D003821 ORTHO05D004449 8.1e-13 77.0 77 57.1
Manes.03G194900 Manihot esculenta HOM05D003821 ORTHO05D004449 8.1e-13 77.0 78 55.1
PGSC0003DMG400022856 Solanum tuberosum HOM05D003821 ORTHO05D004449 8.1e-13 77.0 116 44.0
Duzib138G0767 Durio zibethinus HOM05D003821 ORTHO05D004449 1.1e-12 76.6 86 50.0
THA.LOC104817510 Tarenaya hassleriana HOM05D003821 ORTHO05D004449 1.1e-12 76.6 90 50.0
Duzib133G0834 Durio zibethinus HOM05D003821 ORTHO05D004449 1.8e-12 75.9 89 50.6
Potri.010G025000 Populus trichocarpa HOM05D003821 ORTHO05D004449 1.8e-12 75.9 80 53.8
PGR031G0623 Punica granatum HOM05D003821 ORTHO05D004449 1.8e-12 75.9 90 53.3
TAR362G0968 Trochodendron aralioides HOM05D003821 ORTHO05D004449 1.8e-12 75.9 89 49.4
Glyma.10G019600 Glycine max HOM05D003821 ORTHO05D004449 2.4e-12 75.5 90 51.1
BolC8t48318H Brassica oleracea HOM05D003821 ORTHO05D004449 3.1e-12 75.1 79 54.4
Aa31LG10G6300 Aethionema arabicum HOM05D003821 ORTHO05D004449 5.3e-12 74.3 118 43.2
Mapoly0039s0070 Marchantia polymorpha HOM05D003821 ORTHO05D004449 5.3e-12 74.3 97 49.5
SalBow2G1159 Salvia bowleyana HOM05D003821 ORTHO05D004449 5.3e-12 74.3 94 54.3
THA.LOC104802574 Tarenaya hassleriana HOM05D003821 ORTHO05D004449 5.3e-12 74.3 79 53.2
Glyma.03G213100 Glycine max HOM05D003821 ORTHO05D004449 6.9e-12 73.9 53 69.8
Lalb_Chr15g0078581 Lupinus albus HOM05D003821 ORTHO05D004449 6.9e-12 73.9 41 87.8
MD11G1304500 Malus domestica HOM05D003821 ORTHO05D004449 6.9e-12 73.9 41 87.8
C07p47410 Brassica napus HOM05D003821 ORTHO05D004449 9.0e-12 73.6 112 44.6
Lalb_Chr18g0047131 Lupinus albus HOM05D003821 ORTHO05D004449 1.5e-11 72.8 41 87.8
Atru.chr5.1182 Acer truncatum HOM05D003821 ORTHO05D004449 2.6e-11 72.0 90 48.9
C01p27060 Brassica napus HOM05D003821 ORTHO05D004449 2.6e-11 72.0 41 85.4
MELO3C016019.2 Cucumis melo HOM05D003821 ORTHO05D004449 2.6e-11 72.0 45 80.0
Gohir.D12G011000 Gossypium hirsutum HOM05D003821 ORTHO05D004449 2.6e-11 72.0 90 47.8
Nitab4.5_0004438g0100 Nicotiana tabacum HOM05D003821 ORTHO05D004449 2.6e-11 72.0 96 43.8
Sp7g14190 Schrenkiella parvula HOM05D003821 ORTHO05D004449 2.6e-11 72.0 41 85.4
Phvul.007G106500 Phaseolus vulgaris HOM05D003821 ORTHO05D004449 3.4e-11 71.6 90 51.1
Hund05412 Selenicereus undatus HOM05D003821 ORTHO05D004449 3.4e-11 71.6 41 85.4
GSVIVG01017758001 Vitis vinifera HOM05D003821 ORTHO05D004449 4.4e-11 71.2 41 85.4
Gohir.A11G115200 Gossypium hirsutum HOM05D003821 ORTHO05D004449 5.8e-11 70.9 90 47.8
Gohir.D11G120200 Gossypium hirsutum HOM05D003821 ORTHO05D004449 5.8e-11 70.9 90 47.8
Gohir.A12G010600 Gossypium hirsutum HOM05D003821 ORTHO05D004449 7.6e-11 70.5 90 46.7
Sabra10G0014100 Salix brachista HOM05D003821 ORTHO05D004449 7.6e-11 70.5 167 35.9
Migut.N00088 Erythranthe guttata HOM05D003821 ORTHO05D004449 9.9e-11 70.1 76 52.6
Gorai.007G128900 Gossypium raimondii HOM05D003821 ORTHO05D004449 9.9e-11 70.1 90 47.8
Gorai.008G011000 Gossypium raimondii HOM05D003821 ORTHO05D004449 9.9e-11 70.1 89 47.2
Nn3g21436 Nelumbo nucifera HOM05D000763 ORTHO05D000599 9.9e-11 70.1 41 82.9
vmacro15236 Vaccinium macrocarpon HOM05D003821 ORTHO05D004449 1.3e-10 69.7 108 43.5
Aa31LG8G3720 Aethionema arabicum HOM05D003821 ORTHO05D004449 1.7e-10 69.3 75 53.3
COL.COLO4_23375 Corchorus olitorius HOM05D003821 ORTHO05D004449 1.7e-10 69.3 44 77.3
MELO3C032813.2 Cucumis melo HOM05D003821 ORTHO05D004449 1.7e-10 69.3 48 75.0
Glyma.02G154700 Glycine max HOM05D003821 ORTHO05D004449 1.7e-10 69.3 90 48.9
TWI14G0562 Tripterygium wilfordii HOM05D003821 ORTHO05D004449 1.7e-10 69.3 90 47.8
THA.LOC104821775 Tarenaya hassleriana HOM05D003821 ORTHO05D004449 2.2e-10 68.9 74 54.1
Cc03_g01940 Coffea canephora HOM05D003821 ORTHO05D004449 2.9e-10 68.6 41 82.9
Medtr7g108615 Medicago truncatula HOM05D003821 ORTHO05D004449 2.9e-10 68.6 41 78.0
PSO832G3070 Papaver somniferum HOM05D003821 ORTHO05D004449 3.8e-10 68.2 88 45.5
RcHm_v2.0_Chr4g0422231 Rosa chinensis HOM05D003821 ORTHO05D004449 6.4e-10 67.4 41 80.5
MD03G1285000 Malus domestica HOM05D003821 ORTHO05D004449 8.4e-10 67.0 48 75.0
Lj4g0002252 Lotus japonicus HOM05D003821 ORTHO05D004449 1.1e-09 66.6 40 82.5
Potri.008G208100 Populus trichocarpa HOM05D003821 ORTHO05D004449 1.1e-09 66.6 80 47.5
Gohir.D01G051650 Gossypium hirsutum HOM05D003821 ORTHO05D004449 1.4e-09 66.2 41 78.0
Gohir.D08G087850 Gossypium hirsutum HOM05D003821 ORTHO05D004449 1.4e-09 66.2 41 78.0
Gorai.002G124200 Gossypium raimondii HOM05D003821 ORTHO05D004449 1.4e-09 66.2 41 78.0
Medtr7g108610 Medicago truncatula HOM05D003821 ORTHO05D004449 1.4e-09 66.2 44 72.7
Nitab4.5_0003546g0070 Nicotiana tabacum HOM05D003821 ORTHO05D004449 2.4e-09 65.5 107 41.1
Gohir.D08G106266 Gossypium hirsutum HOM05D003821 ORTHO05D004449 3.2e-09 65.1 40 80.0
SHI29056 Sapria himalayana HOM05D000030 ORTHO05D000009 3.2e-09 65.1 81 49.4
Pp3c16_4400 Physcomitrium patens HOM05D003821 ORTHO05D004449 5.4e-09 64.3 47 74.5
unitig_748.g8733 Utricularia gibba HOM05D003821 ORTHO05D004449 9.3e-09 63.5 83 48.2
Zm00001eb098770 Zea mays HOM05D003821 ORTHO05D004449 9.3e-09 63.5 77 50.6
DCAR_013986 Daucus carota HOM05D003821 ORTHO05D004449 1.2e-08 63.2 92 45.7
Sabra08G0153500 Salix brachista HOM05D003821 ORTHO05D004449 2.1e-08 62.4 120 38.3
Hund20554 Selenicereus undatus HOM05D003821 ORTHO05D004449 2.1e-08 62.4 107 43.0
PSO210G2740 Papaver somniferum HOM05D003821 ORTHO05D004449 2.7e-08 62.0 88 42.0
RcHm_v2.0_Chr4g0422221 Rosa chinensis HOM05D003821 ORTHO05D004449 3.5e-08 61.6 44 68.2
VMungo0251G2956 Vigna mungo HOM05D000069 ORTHO05D022756 3.5e-08 61.6 51 66.7
GSVIVG01027975001 Vitis vinifera HOM05D003821 ORTHO05D004449 3.5e-08 61.6 41 80.5
Gorai.005G060300 Gossypium raimondii HOM05D003821 ORTHO05D004449 4.6e-08 61.2 41 73.2
Ah.08g213210 Amaranthus hybridus HOM05D003821 ORTHO05D004449 6.0e-08 60.8 46 69.6
CSS0020997 Camellia sinensis var. sinensis HOM05D003821 ORTHO05D004449 6.0e-08 60.8 40 77.5
CSS0044842 Camellia sinensis var. sinensis HOM05D003821 ORTHO05D004449 6.0e-08 60.8 40 77.5
HanXRQChr06g0169061 Helianthus annuus HOM05D003821 ORTHO05D004449 6.0e-08 60.8 41 75.6
Hma1.2p1_0209F.1_g088610 Hydrangea macrophylla HOM05D003821 ORTHO05D004449 6.0e-08 60.8 47 68.1
MBI02_g32313_MAGBIO Magnolia biondii HOM05D036700 ORTHO05D048553 7.8e-08 60.5 54 59.3
PGR004G1635 Punica granatum HOM05D003821 ORTHO05D004449 7.8e-08 60.5 81 46.9
CAN.G484.32 Capsicum annuum HOM05D003821 ORTHO05D004449 1.0e-07 60.1 132 38.6
Cre07.g329800 Chlamydomonas reinhardtii HOM05D003821 ORTHO05D004449 2.3e-07 58.9 61 50.8
Aqoxy1G02453 Aquilegia oxysepala HOM05D036700 ORTHO05D004449 3.9e-07 58.2 86 45.3
Gorai.N022500 Gossypium raimondii HOM05D003821 ORTHO05D004449 6.6e-07 57.4 41 73.2
CSS0048427 Camellia sinensis var. sinensis HOM05D003821 ORTHO05D004449 8.7e-07 57.0 40 75.0
Peaxi162Scf00086g00435 Petunia axillaris HOM05D003821 ORTHO05D004449 8.7e-07 57.0 34 79.4
HPP92_015490 Vanilla planifolia HOM05D003821 ORTHO05D004449 1.5e-06 56.2 66 53.0
Rhsim04G0221500 Rhododendron simsii HOM05D003821 ORTHO05D004449 1.9e-06 55.8 39 69.2
Thhalv10027508m.g Eutrema salsugineum HOM05D003821 ORTHO05D004449 5.6e-06 54.3 38 73.7
Duzib052G0441 Durio zibethinus HOM05D003821 ORTHO05D004449 9.6e-06 53.5 88 40.9
Gohir.A02G049300 Gossypium hirsutum HOM05D003821 ORTHO05D004449 9.6e-06 53.5 75 42.7


User provided reference genes

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