Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.08G096300 Carya illinoinensis HOM05D006871 ORTHO05D008544 1.5e-115 419.5 203 100.0
CiPaw.07G107300 Carya illinoinensis HOM05D006871 ORTHO05D008544 9.2e-81 303.9 192 78.6
Cfa005931 Carpinus fangiana HOM05D006871 ORTHO05D008544 3.2e-73 278.9 196 73.0
Haze_04913 Corylus avellana HOM05D006871 ORTHO05D008544 3.2e-73 278.9 198 72.7
Dinv33046 Davidia involucrata HOM05D006871 ORTHO05D008544 8.1e-69 264.2 193 69.4
Potri.014G130400 Populus trichocarpa HOM05D006871 ORTHO05D008544 3.1e-68 262.3 192 70.3
vmacro02459 Vaccinium macrocarpon HOM05D006871 ORTHO05D008544 2.6e-67 259.2 190 66.8
Sabra14G0097000 Salix brachista HOM05D006871 ORTHO05D008544 3.4e-67 258.8 192 69.3
Atru.chr5.1162 Acer truncatum HOM05D006871 ORTHO05D008544 1.3e-66 256.9 192 65.1
Gohir.A08G101400 Gossypium hirsutum HOM05D006871 ORTHO05D008544 3.7e-66 255.4 197 68.0
Ciclev10022428m.g Citrus clementina HOM05D006871 ORTHO05D008544 6.4e-66 254.6 192 66.7
Hma1.2p1_0491F.1_g164460 Hydrangea macrophylla HOM05D006871 ORTHO05D008544 6.4e-66 254.6 189 68.3
CSS0020652 Camellia sinensis var. sinensis HOM05D006871 ORTHO05D008544 8.4e-66 254.2 190 65.3
Gohir.D08G084900 Gossypium hirsutum HOM05D006871 ORTHO05D008544 8.4e-66 254.2 195 68.2
Peaxi162Scf00001g00482 Petunia axillaris HOM05D006871 ORTHO05D008544 1.9e-65 253.1 191 67.0
CSS0035923 Camellia sinensis var. sinensis HOM05D006871 ORTHO05D008544 2.4e-65 252.7 190 64.7
MELO3C016009.2 Cucumis melo HOM05D006871 ORTHO05D008544 4.1e-65 251.9 189 66.1
Oeu032105.1 Olea europaea HOM05D006871 ORTHO05D008544 4.1e-65 251.9 193 64.8
Rhsim13G0011300 Rhododendron simsii HOM05D000121 ORTHO05D000102 4.1e-65 251.9 186 67.2
Duzib138G1907 Durio zibethinus HOM05D006871 ORTHO05D008544 5.4e-65 251.5 195 65.6
CANSAT25G1157 Cannabis sativa HOM05D006871 ORTHO05D008544 1.6e-64 250.0 195 65.1
CANSAT25G3267 Cannabis sativa HOM05D006871 ORTHO05D008544 1.6e-64 250.0 195 65.1
Duzib133G1442 Durio zibethinus HOM05D006871 ORTHO05D008544 1.6e-64 250.0 196 66.3
SalBow3G3208 Salvia bowleyana HOM05D006871 ORTHO05D008544 1.6e-64 250.0 191 63.4
MSTRG.18162 Avicennia marina HOM05D006871 ORTHO05D008544 2.1e-64 249.6 192 64.1
Thecc.01G298700 Theobroma cacao HOM05D006871 ORTHO05D008544 2.1e-64 249.6 195 66.2
Lsat_1_v5_gn_8_53460 Lactuca sativa HOM05D006871 ORTHO05D008544 3.5e-64 248.8 190 65.3
Manes.05G063100 Manihot esculenta HOM05D006871 ORTHO05D008544 4.6e-64 248.4 191 65.4
MD11G1313700 Malus domestica HOM05D006871 ORTHO05D008544 6.0e-64 248.1 194 64.9
TAR633G1007 Trochodendron aralioides HOM05D006871 ORTHO05D008544 6.0e-64 248.1 195 64.6
CsaV3_7G029180 Cucumis sativus L. HOM05D006871 ORTHO05D008544 7.8e-64 247.7 189 65.6
PGSC0003DMG400011375 Solanum tuberosum HOM05D006871 ORTHO05D008544 7.8e-64 247.7 198 65.2
TWI14G0013 Tripterygium wilfordii HOM05D006871 ORTHO05D008544 1.0e-63 247.3 190 67.4
PGR119G1195 Punica granatum HOM05D006871 ORTHO05D008544 1.3e-63 246.9 199 62.8
PGR119G1688 Punica granatum HOM05D006871 ORTHO05D008544 1.3e-63 246.9 199 62.8
GSVIVG01027991001 Vitis vinifera HOM05D006871 ORTHO05D008544 1.3e-63 246.9 198 62.1
HanXRQChr06g0163831 Helianthus annuus HOM05D006871 ORTHO05D008544 1.7e-63 246.5 189 66.7
Nitab4.5_0002469g0070 Nicotiana tabacum HOM05D006871 ORTHO05D008544 1.7e-63 246.5 199 62.8
Actinidia32224 Actinidia chinensis HOM05D006871 ORTHO05D008544 2.3e-63 246.1 190 64.2
THA.LOC104815930 Tarenaya hassleriana HOM05D006871 ORTHO05D008544 2.3e-63 246.1 196 64.8
Prupe.8G259900 Prunus persica HOM05D006871 ORTHO05D008544 3.0e-63 245.7 186 64.5
ClCG09G005940 Citrullus lanatus HOM05D006871 ORTHO05D008544 5.1e-63 245.0 193 64.2
Sed0022553 Sechium edule HOM05D006871 ORTHO05D008544 5.1e-63 245.0 192 63.0
Solyc09g075030.3 Solanum lycopersicum HOM05D006871 ORTHO05D008544 8.6e-63 244.2 199 64.3
Cpa.g.sc9.224 Carica papaya HOM05D000121 ORTHO05D000102 1.1e-62 243.8 200 61.0
THA.LOC104801274 Tarenaya hassleriana HOM05D006871 ORTHO05D008544 1.9e-62 243.0 193 63.2
unitig_0.g659 Utricularia gibba HOM05D006871 ORTHO05D008544 1.9e-62 243.0 189 64.0
Aqoxy5G00741 Aquilegia oxysepala HOM05D006871 ORTHO05D008544 5.6e-62 241.5 190 64.2
Nitab4.5_0011307g0010 Nicotiana tabacum HOM05D006871 ORTHO05D008544 5.6e-62 241.5 193 62.7
Sopen09g029850 Solanum pennellii HOM05D006871 ORTHO05D008544 5.6e-62 241.5 199 63.8
SGA_v2.0_scaffold1G00373 Striga asiatica HOM05D001198 ORTHO05D008544 5.6e-62 241.5 185 64.3
Actinidia24342 Actinidia chinensis HOM05D006871 ORTHO05D008544 7.3e-62 241.1 189 65.6
BcaC05g24587 Brassica carinata HOM05D006871 ORTHO05D008544 9.6e-62 240.7 189 63.0
C05p01490 Brassica napus HOM05D006871 ORTHO05D008544 9.6e-62 240.7 189 63.0
COL.COLO4_23360 Corchorus olitorius HOM05D006871 ORTHO05D008544 1.6e-61 240.0 186 66.7
Thhalv10008837m.g Eutrema salsugineum HOM05D006871 ORTHO05D008544 1.6e-61 240.0 192 64.1
QL12p027406 Quercus lobata HOM05D006871 ORTHO05D008544 1.6e-61 240.0 182 69.2
BolC5t28931H Brassica oleracea HOM05D006871 ORTHO05D008544 2.8e-61 239.2 189 62.4
BraA10t42428Z Brassica rapa HOM05D006871 ORTHO05D008544 3.6e-61 238.8 189 62.4
A10p01520 Brassica napus HOM05D006871 ORTHO05D008544 6.2e-61 238.0 189 62.4
Migut.D00207 Erythranthe guttata HOM05D006871 ORTHO05D008544 8.1e-61 237.7 191 60.2
Lj2A1192T47 Lonicera japonica HOM05D006871 ORTHO05D008544 8.1e-61 237.7 194 63.9
Gorai.004G089300 Gossypium raimondii HOM05D006871 ORTHO05D008544 1.1e-60 237.3 228 58.3
Cc09_g05510 Coffea canephora HOM05D006871 ORTHO05D008544 2.4e-60 236.1 184 65.8
Sc05g0003970 Simmondsia chinensis HOM05D006871 ORTHO05D008544 3.1e-60 235.7 189 64.6
EL10Ac7g17459 Beta vulgaris HOM05D006871 ORTHO05D008544 4.0e-60 235.3 194 61.9
BcaB03g15758 Brassica carinata HOM05D006871 ORTHO05D008544 5.2e-60 235.0 193 62.2
Sp1g01860 Schrenkiella parvula HOM05D006871 ORTHO05D008544 1.5e-59 233.4 189 61.9
AT1G02870 Arabidopsis thaliana HOM05D006871 ORTHO05D008544 2.0e-59 233.0 190 61.6
AUR62033118 Chenopodium quinoa HOM05D006871 ORTHO05D008544 2.0e-59 233.0 192 62.5
Aa31LG1G9720 Aethionema arabicum HOM05D006871 ORTHO05D008544 5.8e-59 231.5 192 61.5
AL1G12280 Arabidopsis lyrata HOM05D006871 ORTHO05D008544 1.7e-58 229.9 189 61.4
Lalb_Chr18g0047051 Lupinus albus HOM05D006871 ORTHO05D008544 4.9e-58 228.4 195 59.5
CARHR002210 Cardamine hirsuta HOM05D006871 ORTHO05D008544 6.4e-58 228.0 189 59.8
ECA236G5112 Erigeron canadensis HOM05D006871 ORTHO05D008544 6.4e-58 228.0 191 61.3
Eucgr.H01153 Eucalyptus grandis HOM05D006871 ORTHO05D008544 6.4e-58 228.0 204 57.8
RcHm_v2.0_Chr6g0293791 Rosa chinensis HOM05D006871 ORTHO05D008544 4.2e-57 225.3 191 60.2
arahy.Tifrunner.gnm1.ann1.KXN2DA Arachis hypogaea HOM05D006871 ORTHO05D008544 7.1e-57 224.6 186 60.8
CAN.G339.16 Capsicum annuum HOM05D006871 ORTHO05D008544 9.3e-57 224.2 186 64.0
arahy.Tifrunner.gnm1.ann1.K3SJ5I Arachis hypogaea HOM05D006871 ORTHO05D008544 2.1e-56 223.0 188 59.6
Carub.0001s0199 Capsella rubella HOM05D006871 ORTHO05D008544 2.7e-56 222.6 189 60.3
PSO210G5360 Papaver somniferum HOM05D006871 ORTHO05D008544 2.7e-56 222.6 187 63.1
PSO832G2873 Papaver somniferum HOM05D006871 ORTHO05D008544 2.7e-56 222.6 187 63.1
Hund18131 Selenicereus undatus HOM05D006871 ORTHO05D008544 3.5e-56 222.2 232 52.2
BolC8t46828H Brassica oleracea HOM05D006871 ORTHO05D008544 7.8e-56 221.1 195 57.9
C08p00260 Brassica napus HOM05D006871 ORTHO05D008544 1.0e-55 220.7 191 59.2
ATR0796G034 Amborella trichopoda HOM05D006871 ORTHO05D008544 2.4e-52 209.5 188 57.4
Lj1g0003126 Lotus japonicus HOM05D006871 ORTHO05D008544 4.0e-52 208.8 188 55.3
FAN20G2591 Fragaria x ananassa HOM05D006871 ORTHO05D008544 1.5e-51 206.8 188 55.9
FvH4_2g25580 Fragaria vesca HOM05D006871 ORTHO05D008544 2.6e-51 206.1 188 55.9
FAN27G2794 Fragaria x ananassa HOM05D006871 ORTHO05D008544 4.4e-51 205.3 188 55.3
Medtr1g088670 Medicago truncatula HOM05D006871 ORTHO05D008544 4.4e-51 205.3 185 57.3
Psat6g165000 Pisum sativum HOM05D006871 ORTHO05D008544 5.8e-51 204.9 182 56.6
VMungo0720G2524 Vigna mungo HOM05D006871 ORTHO05D008544 9.9e-51 204.1 185 54.1
Ca_10345_v3 Cicer arietinum L. HOM05D006871 ORTHO05D008544 8.4e-50 201.1 183 54.6
AUR62008650 Chenopodium quinoa HOM05D006871 ORTHO05D008544 1.9e-49 199.9 275 43.3
CDE05G0468 Ceratophyllum demersum HOM05D006871 ORTHO05D008544 7.1e-49 198.0 188 54.8
Glyma.02G155400 Glycine max HOM05D006871 ORTHO05D008544 1.6e-48 196.8 181 51.9
Phvul.007G143800 Phaseolus vulgaris HOM05D006871 ORTHO05D008544 6.0e-48 194.9 185 52.4
Glyma.10G018900 Glycine max HOM05D006871 ORTHO05D008544 7.9e-48 194.5 181 53.0
Zm00001eb285510 Zea mays HOM05D006871 ORTHO05D008544 3.3e-46 189.1 180 55.0
Os05g0367100 Oryza sativa ssp. japonica HOM05D006871 ORTHO05D008544 9.6e-46 187.6 187 51.9
Nn3g21461 Nelumbo nucifera HOM05D006871 ORTHO05D008544 6.2e-45 184.9 152 65.1
FAN24G1547 Fragaria x ananassa HOM05D006871 ORTHO05D008544 1.2e-43 180.6 181 52.5
HPP92_013720 Vanilla planifolia HOM05D006871 ORTHO05D008544 2.0e-43 179.9 183 52.5
BcaC07g36990 Brassica carinata HOM05D006871 ORTHO05D008544 8.7e-39 164.5 149 55.7
Pp3c25_320 Physcomitrium patens HOM05D006871 ORTHO05D008544 3.2e-33 146.0 176 47.2
AagrBONN_evm.TU.Sc2ySwM_117.3922 Anthoceros agrestis HOM05D006871 ORTHO05D008544 3.3e-30 136.0 172 43.0
MBI19_g13201_MAGBIO Magnolia biondii HOM05D006871 ORTHO05D008544 2.6e-27 126.3 105 63.8
DCAR_002824 Daucus carota HOM05D006871 ORTHO05D008544 2.7e-24 116.3 109 53.2
Mapoly0043s0113 Marchantia polymorpha HOM05D006871 ORTHO05D008544 1.0e-23 114.4 175 37.7
CDE11G0846 Ceratophyllum demersum HOM05D006871 ORTHO05D008544 2.4e-20 103.2 110 52.7
Psat1g156280 Pisum sativum HOM05D006871 ORTHO05D008544 6.9e-20 101.7 101 52.5
MD05G1198200 Malus domestica HOM05D006871 ORTHO05D008544 1.7e-18 97.1 55 74.5
Cre17.g726650 Chlamydomonas reinhardtii HOM05D006871 ORTHO05D008544 1.1e-14 84.3 182 32.4
Nitab4.5_0000119g0320 Nicotiana tabacum HOM05D006871 ORTHO05D008544 2.4e-12 76.6 50 66.0
MD03G1286500 Malus domestica HOM05D006871 ORTHO05D008544 2.9e-10 69.7 37 78.4
CBR_g19096 Chara braunii HOM05D006871 ORTHO05D008544 2.5e-09 66.6 68 48.5
MCO15G582 Micromonas commoda HOM05D006871 ORTHO05D008544 6.1e-08 62.0 188 27.7


User provided reference genes

Program Settings