Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.08G094900 Carya illinoinensis HOM05D005743 ORTHO05D007031 4.7e-188 661.0 319 100.0
Cfa005908 Carpinus fangiana HOM05D005743 ORTHO05D007031 5.1e-126 454.9 295 77.6
Dinv19686 Davidia involucrata HOM05D005743 ORTHO05D007031 8.9e-123 444.1 291 74.2
CANSAT25G1370 Cannabis sativa HOM05D005743 ORTHO05D007031 1.7e-121 439.9 294 73.8
QL12p028420 Quercus lobata HOM05D005743 ORTHO05D007031 3.8e-121 438.7 291 75.3
FvH4_2g25770 Fragaria vesca HOM05D005743 ORTHO05D007031 6.0e-119 431.4 293 71.3
FAN24G1083 Fragaria x ananassa HOM05D005743 ORTHO05D007031 6.0e-119 431.4 293 71.3
FAN15G2676 Fragaria x ananassa HOM05D005743 ORTHO05D007031 1.3e-118 430.3 293 71.3
FAN20G0637 Fragaria x ananassa HOM05D005743 ORTHO05D007031 3.0e-118 429.1 293 71.7
Prupe.8G261900 Prunus persica HOM05D005743 ORTHO05D007031 1.1e-117 427.2 291 70.8
RcHm_v2.0_Chr6g0294071 Rosa chinensis HOM05D005743 ORTHO05D007031 3.3e-117 425.6 295 72.2
Atru.chr5.1142 Acer truncatum HOM05D005743 ORTHO05D007031 9.6e-117 424.1 297 71.7
MD03G1288600 Malus domestica HOM05D005743 ORTHO05D007031 9.6e-117 424.1 291 71.1
CSS0024650 Camellia sinensis var. sinensis HOM05D005743 ORTHO05D007031 1.3e-116 423.7 291 72.9
Ciclev10019600m.g Citrus clementina HOM05D005743 ORTHO05D007031 1.3e-116 423.7 293 72.4
COL.COLO4_23341 Corchorus olitorius HOM05D005743 ORTHO05D007031 4.8e-116 421.8 292 69.9
Potri.014G128600 Populus trichocarpa HOM05D005743 ORTHO05D007031 1.4e-115 420.2 291 72.2
Oeu046676.1 Olea europaea HOM05D005743 ORTHO05D007031 1.8e-115 419.9 291 70.4
Thecc.01G301000 Theobroma cacao HOM05D005743 ORTHO05D007031 1.8e-115 419.9 291 71.8
TAR362G0334 Trochodendron aralioides HOM05D005743 ORTHO05D007031 1.5e-114 416.8 291 71.8
TWI59G0198 Tripterygium wilfordii HOM05D005743 ORTHO05D007031 7.6e-114 414.5 291 70.1
Hma1.2p1_0491F.1_g164590 Hydrangea macrophylla HOM05D005743 ORTHO05D007031 9.9e-114 414.1 291 71.5
Peaxi162Scf00399g00716 Petunia axillaris HOM05D005743 ORTHO05D007031 9.9e-114 414.1 291 69.8
Sabra14G0095500 Salix brachista HOM05D005743 ORTHO05D007031 1.7e-113 413.3 327 66.4
Aqoxy2G02938 Aquilegia oxysepala HOM05D005743 ORTHO05D007031 4.9e-113 411.8 291 70.8
Sc05g0003820 Simmondsia chinensis HOM05D005743 ORTHO05D007031 3.2e-112 409.1 291 70.1
PSO407G0387 Papaver somniferum HOM05D005743 ORTHO05D007031 4.2e-112 408.7 296 69.9
PSO170G2277 Papaver somniferum HOM05D005743 ORTHO05D007031 7.1e-112 407.9 296 69.6
Sopen06g003890 Solanum pennellii HOM05D005743 ORTHO05D007031 2.7e-111 406.0 291 69.8
Lj2A1195G24 Lonicera japonica HOM05D005743 ORTHO05D007031 7.9e-111 404.4 291 69.1
CsaV3_4G000840 Cucumis sativus L. HOM05D005743 ORTHO05D007031 1.3e-110 403.7 293 70.6
Nitab4.5_0005805g0040 Nicotiana tabacum HOM05D005743 ORTHO05D007031 1.7e-110 403.3 291 69.4
Sed0000130 Sechium edule HOM05D005743 ORTHO05D007031 1.7e-110 403.3 298 69.5
Solyc06g009130.3 Solanum lycopersicum HOM05D005743 ORTHO05D007031 1.7e-110 403.3 291 69.8
Eucgr.K03488 Eucalyptus grandis HOM05D005743 ORTHO05D007031 3.0e-110 402.5 291 68.7
Lj5g0015401 Lotus japonicus HOM05D005743 ORTHO05D007031 8.7e-110 401.0 292 69.9
MELO3C017953.2 Cucumis melo HOM05D005743 ORTHO05D007031 1.1e-109 400.6 293 70.3
MBI18_g06031_MAGBIO Magnolia biondii HOM05D005743 ORTHO05D007031 1.5e-109 400.2 291 67.7
RcHm_v2.0_Chr6g0294081 Rosa chinensis HOM05D005743 ORTHO05D007031 1.9e-109 399.8 294 68.4
Gorai.007G127900 Gossypium raimondii HOM05D005743 ORTHO05D007031 2.5e-109 399.4 291 68.0
Manes.01G219600 Manihot esculenta HOM05D005743 ORTHO05D007031 7.3e-109 397.9 291 66.7
Nitab4.5_0002470g0070 Nicotiana tabacum HOM05D005743 ORTHO05D007031 7.3e-109 397.9 292 68.2
CAN.G1989.8 Capsicum annuum HOM05D005743 ORTHO05D007031 9.6e-109 397.5 291 69.1
Rhsim01G0285500 Rhododendron simsii HOM05D005743 ORTHO05D007031 9.6e-109 397.5 292 68.2
THA.LOC104827666 Tarenaya hassleriana HOM05D005743 ORTHO05D007031 9.6e-109 397.5 291 66.7
GSVIVG01028023001 Vitis vinifera HOM05D005743 ORTHO05D007031 2.1e-108 396.4 291 70.4
Duzib138G1616 Durio zibethinus HOM05D005743 ORTHO05D007031 2.8e-108 396.0 291 69.1
Glyma.10G018000 Glycine max HOM05D005743 ORTHO05D007031 3.6e-108 395.6 292 68.5
THA.LOC104817489 Tarenaya hassleriana HOM05D005743 ORTHO05D007031 8.1e-108 394.4 291 66.3
Medtr1g088430 Medicago truncatula HOM05D005743 ORTHO05D007031 4.0e-107 392.1 291 68.0
arahy.Tifrunner.gnm1.ann1.39WPG8 Arachis hypogaea HOM05D005743 ORTHO05D007031 1.2e-106 390.6 292 68.2
Lalb_Chr06g0166491 Lupinus albus HOM05D005743 ORTHO05D007031 1.5e-106 390.2 291 68.0
VMungo0720G3165 Vigna mungo HOM05D005743 ORTHO05D007031 2.0e-106 389.8 293 68.3
arahy.Tifrunner.gnm1.ann1.V1RZF6 Arachis hypogaea HOM05D005743 ORTHO05D007031 2.6e-106 389.4 292 67.8
Cc01_g20880 Coffea canephora HOM05D005743 ORTHO05D007031 4.5e-106 388.7 294 67.7
Phvul.007G147000 Phaseolus vulgaris HOM05D005743 ORTHO05D007031 9.9e-106 387.5 293 67.6
Cpa.g.sc9.258 Carica papaya HOM05D005743 ORTHO05D007031 4.9e-105 385.2 291 67.0
SalBow2G1764 Salvia bowleyana HOM05D005743 ORTHO05D007031 4.9e-105 385.2 291 64.6
PGR044G1461 Punica granatum HOM05D005743 ORTHO05D007031 1.1e-104 384.0 350 58.9
Migut.D00150 Erythranthe guttata HOM05D005743 ORTHO05D007031 1.4e-104 383.6 293 67.6
AUR62025577 Chenopodium quinoa HOM05D005743 ORTHO05D007031 1.9e-104 383.3 291 69.1
Gohir.D11G119400 Gossypium hirsutum HOM05D005743 ORTHO05D007031 2.4e-104 382.9 291 65.6
AUR62008667 Chenopodium quinoa HOM05D005743 ORTHO05D007031 3.2e-104 382.5 291 69.4
DCAR_005790 Daucus carota HOM05D005743 ORTHO05D007031 4.2e-104 382.1 310 62.9
Sc05g0003780 Simmondsia chinensis HOM05D005743 ORTHO05D007031 1.2e-103 380.6 291 66.3
ClCG10G010970 Citrullus lanatus HOM05D005743 ORTHO05D007031 2.1e-103 379.8 325 61.5
Thhalv10001391m.g Eutrema salsugineum HOM05D005743 ORTHO05D007031 2.1e-103 379.8 293 64.8
Ca_10331_v3 Cicer arietinum L. HOM05D005743 ORTHO05D007031 3.5e-103 379.0 291 66.3
TPR.G33974 Trifolium pratense HOM05D005743 ORTHO05D007031 1.0e-102 377.5 291 66.3
Aa31LG1G28940 Aethionema arabicum HOM05D005743 ORTHO05D007031 1.3e-102 377.1 292 65.4
Carub.0004s3033 Capsella rubella HOM05D005743 ORTHO05D007031 2.3e-102 376.3 293 65.5
CAN.G1280.3 Capsicum annuum HOM05D005743 ORTHO05D007031 3.0e-102 375.9 286 68.2
Migut.O00421 Erythranthe guttata HOM05D005743 ORTHO05D007031 3.9e-102 375.6 291 66.3
Migut.N01507 Erythranthe guttata HOM05D005743 ORTHO05D007031 5.1e-102 375.2 292 66.1
AL4G47180 Arabidopsis lyrata HOM05D005743 ORTHO05D007031 1.1e-101 374.0 297 65.0
AT2G47600 Arabidopsis thaliana HOM05D005743 ORTHO05D007031 3.3e-101 372.5 297 64.6
CARHR143000 Cardamine hirsuta HOM05D005743 ORTHO05D007031 3.3e-101 372.5 293 63.8
C04p00250 Brassica napus HOM05D005743 ORTHO05D007031 1.8e-99 366.7 294 62.9
BolC4t21668H Brassica oleracea HOM05D005743 ORTHO05D007031 1.8e-99 366.7 294 62.9
BraA05t19031Z Brassica rapa HOM05D005743 ORTHO05D007031 1.8e-99 366.7 294 62.9
Actinidia24820 Actinidia chinensis HOM05D005743 ORTHO05D007031 3.1e-99 365.9 291 64.6
A05p00330 Brassica napus HOM05D005743 ORTHO05D007031 1.2e-98 364.0 294 62.6
ECA248G2514 Erigeron canadensis HOM05D005743 ORTHO05D007031 3.4e-98 362.5 291 61.9
Eucgr.K03487 Eucalyptus grandis HOM05D005743 ORTHO05D007031 4.5e-98 362.1 291 63.9
SalBow3G4402 Salvia bowleyana HOM05D005743 ORTHO05D007031 4.5e-98 362.1 291 62.9
Os11g0660000 Oryza sativa ssp. japonica HOM05D005743 ORTHO05D007031 4.9e-97 358.6 291 61.5
SGA_v2.0_scaffold198G41143 Striga asiatica HOM05D005743 ORTHO05D007031 1.4e-96 357.1 318 58.8
Ah.08g213420 Amaranthus hybridus HOM05D005743 ORTHO05D007031 2.5e-96 356.3 291 63.6
EL10Ac7g17510 Beta vulgaris HOM05D005743 ORTHO05D007031 3.2e-96 355.9 291 64.3
HanXRQChr13g0413001 Helianthus annuus HOM05D005743 ORTHO05D007031 1.2e-95 354.0 291 60.1
HPP92_016082 Vanilla planifolia HOM05D005743 ORTHO05D007031 4.6e-95 352.1 291 61.5
Hund18172 Selenicereus undatus HOM05D005743 ORTHO05D007031 1.9e-93 346.7 291 61.9
CDE02G2026 Ceratophyllum demersum HOM05D005743 ORTHO05D007031 3.3e-93 345.9 291 59.5
Zm00001eb165450 Zea mays HOM05D005743 ORTHO05D007031 2.4e-91 339.7 313 56.5
Lsat_1_v5_gn_5_191280 Lactuca sativa HOM05D005743 ORTHO05D007031 9.0e-91 337.8 295 59.3
ATR0706G014 Amborella trichopoda HOM05D005743 ORTHO05D007031 1.6e-87 327.0 213 73.7
Gohir.A11G114301 Gossypium hirsutum HOM05D005743 ORTHO05D007031 1.3e-86 323.9 236 67.4
Hund18173 Selenicereus undatus HOM05D005743 ORTHO05D007031 2.5e-85 319.7 220 73.6
SGA_v2.0_scaffold1G00362 Striga asiatica HOM05D005743 ORTHO05D007031 5.7e-85 318.5 295 59.7
FAN27G1322 Fragaria x ananassa HOM05D005743 ORTHO05D007031 1.6e-84 317.0 227 67.8
Nitab4.5_0001879g0130 Nicotiana tabacum HOM05D005743 ORTHO05D007031 2.2e-84 316.6 313 55.3
Nn4g25787 Nelumbo nucifera HOM05D005743 ORTHO05D007031 4.6e-79 298.9 225 65.8
Haze_04942 Corylus avellana HOM05D005743 ORTHO05D007031 3.0e-78 296.2 347 53.3
Peaxi162Scf00001g04234 Petunia axillaris HOM05D005743 ORTHO05D007031 3.0e-78 296.2 296 56.4
BcaB02g08759 Brassica carinata HOM05D005743 ORTHO05D007031 4.3e-77 292.4 293 54.6
Psat6g165240 Pisum sativum HOM05D005743 ORTHO05D007031 5.5e-72 275.4 225 60.4
THA.LOC104798829 Tarenaya hassleriana HOM05D005743 ORTHO05D007031 6.5e-57 225.3 125 85.6
Actinidia26720 Actinidia chinensis HOM05D005743 ORTHO05D007031 2.6e-53 213.4 204 55.9
AagrBONN_evm.TU.Sc2ySwM_344.5359 Anthoceros agrestis HOM05D005743 ORTHO05D007031 3.5e-50 203.0 310 39.4
Mapoly0134s0038 Marchantia polymorpha HOM05D005743 ORTHO05D007031 7.7e-50 201.8 162 61.1
SMO351G0556 Selaginella moellendorffii HOM05D005743 ORTHO05D007031 6.5e-49 198.7 168 55.4
Actinidia21045 Actinidia chinensis HOM05D005743 ORTHO05D007031 8.5e-49 198.4 100 91.0
Zm00001eb407450 Zea mays HOM05D005743 ORTHO05D007031 2.5e-48 196.8 174 58.0
Pp3c1_39250 Physcomitrium patens HOM05D005743 ORTHO05D007031 3.2e-48 196.4 164 59.8
Pp3c2_6060 Physcomitrium patens HOM05D005743 ORTHO05D007031 7.2e-48 195.3 328 39.3
AagrBONN_evm.TU.Sc2ySwM_368.1084 Anthoceros agrestis HOM05D005743 ORTHO05D007031 2.7e-47 193.4 292 39.0
Nitab4.5_0002433g0030 Nicotiana tabacum HOM05D005743 ORTHO05D007031 1.5e-32 144.4 224 44.2
CBR_g22437 Chara braunii HOM05D005743 ORTHO05D007031 4.3e-32 142.9 157 47.1
vmacro15016 Vaccinium macrocarpon HOM05D005743 ORTHO05D007031 5.2e-30 136.0 136 49.3
Glyma.02G017550 Glycine max HOM05D005743 ORTHO05D007031 1.0e-25 121.7 77 79.2
Cre11.g479600 Chlamydomonas reinhardtii HOM05D005743 ORTHO05D007031 1.9e-24 117.5 147 41.5
PRCOL_00004461 Prasinoderma coloniale HOM05D005743 ORTHO05D007031 1.8e-22 110.9 176 37.5
SEGI_31813 Sequoiadendron giganteum HOM05D005743 ORTHO05D007031 7.5e-21 105.5 96 55.2
SEGI_40223 Sequoiadendron giganteum HOM05D005743 ORTHO05D007031 2.7e-18 97.1 66 68.2
Os02g0644900 Oryza sativa ssp. japonica HOM05D005743 ORTHO05D007031 4.6e-18 96.3 139 34.5
Rhsim05G0173900 Rhododendron simsii HOM05D005743 ORTHO05D007031 1.0e-17 95.1 66 72.7
Actinidia21044 Actinidia chinensis HOM05D005743 ORTHO05D007031 1.2e-10 71.6 71 50.7


User provided reference genes

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