Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.08G091700 Carya illinoinensis HOM05D003790 ORTHO05D004481 1.8e-99 365.9 185 100.0
CiPaw.07G114900 Carya illinoinensis HOM05D003790 ORTHO05D004481 1.5e-61 240.0 188 72.9
Duzib138G1652 Durio zibethinus HOM05D003790 ORTHO05D004481 7.4e-53 211.1 194 61.9
Rhsim13G0006400 Rhododendron simsii HOM05D003790 ORTHO05D004481 3.4e-50 202.2 196 55.6
TAR633G1354 Trochodendron aralioides HOM05D003790 ORTHO05D004481 3.4e-50 202.2 190 60.0
Cfa005842 Carpinus fangiana HOM05D003790 ORTHO05D004481 7.6e-50 201.1 181 65.2
TAR633G0094 Trochodendron aralioides HOM05D003790 ORTHO05D004481 1.0e-49 200.7 190 59.5
Haze_05008 Corylus avellana HOM05D003790 ORTHO05D004481 2.9e-49 199.1 187 62.0
Thecc.01G310000 Theobroma cacao HOM05D003790 ORTHO05D004481 3.8e-49 198.7 191 59.7
vmacro02415 Vaccinium macrocarpon HOM05D003790 ORTHO05D004481 1.4e-48 196.8 192 58.9
Potri.002G198800 Populus trichocarpa HOM05D003790 ORTHO05D004481 1.2e-47 193.7 188 60.1
Duzib133G0291 Durio zibethinus HOM05D003790 ORTHO05D004481 1.6e-47 193.4 192 60.9
Manes.01G225600 Manihot esculenta HOM05D003790 ORTHO05D004481 1.6e-47 193.4 180 62.8
Phvul.007G216200 Phaseolus vulgaris HOM05D003790 ORTHO05D004481 2.7e-47 192.6 190 55.8
VMungo0720G2360 Vigna mungo HOM05D003790 ORTHO05D004481 6.1e-47 191.4 191 56.0
CAN.G69.5 Capsicum annuum HOM05D003790 ORTHO05D004481 7.9e-47 191.0 187 57.8
Medtr1g087710 Medicago truncatula HOM05D003790 ORTHO05D004481 1.0e-46 190.7 192 54.7
PGSC0003DMG400037362 Solanum tuberosum HOM05D003790 ORTHO05D004481 1.8e-46 189.9 177 57.6
Sabra14G0091700 Salix brachista HOM05D003790 ORTHO05D004481 3.0e-46 189.1 189 59.3
Gorai.001G143000 Gossypium raimondii HOM05D003790 ORTHO05D004481 3.9e-46 188.7 197 58.4
Potri.014G123400 Populus trichocarpa HOM05D003790 ORTHO05D004481 5.1e-46 188.3 190 58.4
Gohir.D07G131700 Gossypium hirsutum HOM05D003790 ORTHO05D004481 8.7e-46 187.6 197 58.4
Gohir.A07G127400 Gossypium hirsutum HOM05D003790 ORTHO05D004481 1.9e-45 186.4 197 57.4
Lalb_Chr02g0146651 Lupinus albus HOM05D003790 ORTHO05D004481 1.9e-45 186.4 188 57.4
Aqoxy2G02808 Aquilegia oxysepala HOM05D003790 ORTHO05D004481 7.4e-45 184.5 184 56.5
Lalb_Chr06g0166611 Lupinus albus HOM05D003790 ORTHO05D004481 2.2e-44 183.0 186 57.5
Rhsim01G0289200 Rhododendron simsii HOM05D003790 ORTHO05D004481 8.2e-44 181.0 185 57.8
TPR.G7317 Trifolium pratense HOM05D003790 ORTHO05D004481 8.2e-44 181.0 194 54.1
Nitab4.5_0000116g0070 Nicotiana tabacum HOM05D003790 ORTHO05D004481 1.1e-43 180.6 191 56.5
Peaxi162Scf00001g00262 Petunia axillaris HOM05D003790 ORTHO05D004481 1.1e-43 180.6 203 53.2
Peaxi162Scf00001g00263 Petunia axillaris HOM05D003790 ORTHO05D004481 1.4e-43 180.3 188 55.9
PGSC0003DMG400009002 Solanum tuberosum HOM05D003790 ORTHO05D004481 1.4e-43 180.3 178 57.9
QL12p028945 Quercus lobata HOM05D003790 ORTHO05D004481 2.4e-43 179.5 180 63.3
Nitab4.5_0010548g0010 Nicotiana tabacum HOM05D003790 ORTHO05D004481 3.1e-43 179.1 184 56.5
Glyma.02G014300 Glycine max HOM05D003790 ORTHO05D004481 4.1e-43 178.7 194 53.6
Nitab4.5_0017359g0010 Nicotiana tabacum HOM05D003790 ORTHO05D004481 1.5e-42 176.8 193 54.9
Cpa.g.sc18.4 Carica papaya HOM05D003790 ORTHO05D004481 3.4e-42 175.6 185 58.9
Oeu008329.1 Olea europaea HOM05D003790 ORTHO05D004481 3.4e-42 175.6 187 52.9
Glyma.10G015000 Glycine max HOM05D003790 ORTHO05D004481 4.5e-42 175.3 193 54.9
Nn3g21628 Nelumbo nucifera HOM05D003790 ORTHO05D004481 5.9e-42 174.9 198 56.6
Gorai.007G124700 Gossypium raimondii HOM05D003790 ORTHO05D004481 1.3e-41 173.7 184 56.5
Nitab4.5_0025993g0010 Nicotiana tabacum HOM05D003790 ORTHO05D004481 1.3e-41 173.7 196 55.1
PGR119G1194 Punica granatum HOM05D003790 ORTHO05D004481 1.3e-41 173.7 182 52.2
Sopen01g031450 Solanum pennellii HOM05D003790 ORTHO05D004481 1.7e-41 173.3 174 56.9
Eucgr.L02691 Eucalyptus grandis HOM05D003790 ORTHO05D004481 2.2e-41 172.9 192 55.2
Lj2P1202T13 Lonicera japonica HOM05D003790 ORTHO05D004481 2.2e-41 172.9 181 53.6
Oeu005872.1 Olea europaea HOM05D003790 ORTHO05D004481 2.2e-41 172.9 188 52.7
PGR119G2441 Punica granatum HOM05D003790 ORTHO05D004481 3.8e-41 172.2 182 52.2
DCAR_018309 Daucus carota HOM05D003790 ORTHO05D004481 5.0e-41 171.8 181 55.8
PSO210G7449 Papaver somniferum HOM05D003790 ORTHO05D004481 5.0e-41 171.8 192 56.8
Peaxi162Scf00001g00254 Petunia axillaris HOM05D003790 ORTHO05D004481 6.5e-41 171.4 193 55.4
Gohir.D11G116500 Gossypium hirsutum HOM05D003790 ORTHO05D004481 8.5e-41 171.0 185 56.2
Actinidia21012 Actinidia chinensis HOM05D003790 ORTHO05D004481 1.1e-40 170.6 171 59.6
TAR362G0521 Trochodendron aralioides HOM05D003790 ORTHO05D004481 1.4e-40 170.2 185 55.1
Actinidia25835 Actinidia chinensis HOM05D003270 ORTHO05D003662 2.5e-40 169.5 176 58.0
Ca_10301_v3 Cicer arietinum L. HOM05D003790 ORTHO05D004481 2.5e-40 169.5 185 55.1
Eucgr.E02370 Eucalyptus grandis HOM05D003790 ORTHO05D004481 2.5e-40 169.5 192 54.7
Sopen01g031440 Solanum pennellii HOM05D003790 ORTHO05D004481 2.5e-40 169.5 180 53.3
Dinv33098 Davidia involucrata HOM05D003790 ORTHO05D004481 5.5e-40 168.3 203 55.2
PSO761G0583 Papaver somniferum HOM05D003790 ORTHO05D004481 5.5e-40 168.3 189 55.0
Solyc01g079660.2 Solanum lycopersicum HOM05D003790 ORTHO05D004481 5.5e-40 168.3 181 53.0
Dinv10067 Davidia involucrata HOM05D003790 ORTHO05D004481 2.7e-39 166.0 183 53.6
Sabra02G0159000 Salix brachista HOM05D003790 ORTHO05D004481 6.1e-39 164.9 194 54.1
Oeu005873.1 Olea europaea HOM05D003790 ORTHO05D004481 7.9e-39 164.5 170 55.3
Cc08_g11830 Coffea canephora HOM05D003790 ORTHO05D004481 1.0e-38 164.1 219 51.6
Sed0014571 Sechium edule HOM05D003790 ORTHO05D004481 2.3e-38 162.9 172 52.9
Sed0026960 Sechium edule HOM05D003790 ORTHO05D004481 2.3e-38 162.9 170 53.5
Lj1C20T6 Lonicera japonica HOM05D003790 ORTHO05D004481 3.9e-38 162.2 181 56.4
Ciclev10022416m.g Citrus clementina HOM05D003790 ORTHO05D004481 1.1e-37 160.6 188 55.3
Eucgr.H01068 Eucalyptus grandis HOM05D003790 ORTHO05D004481 1.1e-37 160.6 181 51.4
Lj1C20T16 Lonicera japonica HOM05D003790 ORTHO05D004481 2.0e-37 159.8 179 55.9
Ah.11g049420 Amaranthus hybridus HOM05D003790 ORTHO05D004481 2.6e-37 159.5 174 54.6
FAN04G0217 Fragaria x ananassa HOM05D003790 ORTHO05D004481 4.4e-37 158.7 203 48.3
Gohir.A11G111300 Gossypium hirsutum HOM05D003790 ORTHO05D004481 4.4e-37 158.7 184 53.8
CsaV3_7G029800 Cucumis sativus L. HOM05D003790 ORTHO05D004481 2.8e-36 156.0 186 51.1
Eucgr.K03524 Eucalyptus grandis HOM05D003790 ORTHO05D004481 3.7e-36 155.6 190 54.2
C05p01360 Brassica napus HOM05D003790 ORTHO05D004481 4.8e-36 155.2 174 54.6
Lsat_1_v5_gn_9_541 Lactuca sativa HOM05D003790 ORTHO05D004481 4.8e-36 155.2 177 53.7
Solyc01g079670.2 Solanum lycopersicum HOM05D003790 ORTHO05D004481 4.8e-36 155.2 174 53.4
Gohir.A12G126700 Gossypium hirsutum HOM05D003790 ORTHO05D004481 6.3e-36 154.8 186 53.2
ClCG09G005270 Citrullus lanatus HOM05D003790 ORTHO05D004481 8.2e-36 154.5 176 52.8
PGR119G2399 Punica granatum HOM05D003790 ORTHO05D004481 8.2e-36 154.5 169 54.4
MELO3C015941.2 Cucumis melo HOM05D003790 ORTHO05D004481 1.1e-35 154.1 177 52.0
CANSAT25G2552 Cannabis sativa HOM05D003790 ORTHO05D004481 1.4e-35 153.7 191 53.4
Eucgr.L01709 Eucalyptus grandis HOM05D003790 ORTHO05D004481 1.8e-35 153.3 184 51.1
BolC5t28918H Brassica oleracea HOM05D003790 ORTHO05D004481 5.3e-35 151.8 174 53.4
FvH4_5g39610 Fragaria vesca HOM05D003790 ORTHO05D004481 5.3e-35 151.8 203 47.3
FAN08G1995 Fragaria x ananassa HOM05D003790 ORTHO05D004481 5.3e-35 151.8 203 47.3
FAN13G3073 Fragaria x ananassa HOM05D003790 ORTHO05D004481 5.3e-35 151.8 202 46.5
FAN18G0157 Fragaria x ananassa HOM05D003790 ORTHO05D004481 5.3e-35 151.8 203 47.3
A10p01380 Brassica napus HOM05D003790 ORTHO05D004481 6.9e-35 151.4 174 53.4
BraA10t42414Z Brassica rapa HOM05D003790 ORTHO05D004481 6.9e-35 151.4 174 53.4
THA.LOC104801296 Tarenaya hassleriana HOM05D003790 ORTHO05D004481 3.4e-34 149.1 179 52.5
Nitab4.5_0000116g0080 Nicotiana tabacum HOM05D003790 ORTHO05D004481 5.9e-34 148.3 182 51.6
Carub.0001s0174 Capsella rubella HOM05D003790 ORTHO05D004481 1.0e-33 147.5 174 54.0
SGA_v2.0_scaffold198G41126 Striga asiatica HOM05D003790 ORTHO05D004481 1.0e-33 147.5 171 54.4
AL1G12020 Arabidopsis lyrata HOM05D003790 ORTHO05D004481 1.3e-33 147.1 174 55.7
BcaC07g42307 Brassica carinata HOM05D003790 ORTHO05D004481 1.3e-33 147.1 170 52.9
Gorai.008G141400 Gossypium raimondii HOM05D003790 ORTHO05D004481 6.5e-33 144.8 179 52.5
AT5G38700 Arabidopsis thaliana HOM05D003790 ORTHO05D004481 1.1e-32 144.1 175 53.1
Eucgr.H01059 Eucalyptus grandis HOM05D003790 ORTHO05D004481 1.1e-32 144.1 183 51.9
HanXRQChr01g0000871 Helianthus annuus HOM05D003790 ORTHO05D004481 1.1e-32 144.1 167 50.9
RcHm_v2.0_Chr7g0241911 Rosa chinensis HOM05D003790 ORTHO05D004481 1.1e-32 144.1 197 43.7
HanXRQChr05g0137351 Helianthus annuus HOM05D003790 ORTHO05D004481 1.4e-32 143.7 167 52.1
Sp1g01670 Schrenkiella parvula HOM05D003790 ORTHO05D004481 1.4e-32 143.7 175 52.0
TWI36G1341 Tripterygium wilfordii HOM05D003790 ORTHO05D004481 1.9e-32 143.3 179 49.7
COL.COLO4_23265 Corchorus olitorius HOM05D003790 ORTHO05D004481 3.2e-32 142.5 171 50.9
BcaB03g15798 Brassica carinata HOM05D003790 ORTHO05D004481 7.2e-32 141.4 171 50.9
HanXRQChr05g0137341 Helianthus annuus HOM05D003790 ORTHO05D004481 7.2e-32 141.4 168 53.0
Thhalv10009571m.g Eutrema salsugineum HOM05D003790 ORTHO05D004481 9.4e-32 141.0 187 48.1
A09p68580 Brassica napus HOM05D003790 ORTHO05D004481 2.1e-31 139.8 170 50.6
BraA09t42201Z Brassica rapa HOM05D003790 ORTHO05D004481 2.1e-31 139.8 170 50.6
ECA248G3170 Erigeron canadensis HOM05D003790 ORTHO05D004481 2.7e-31 139.4 172 48.3
Atru.chr5.1052 Acer truncatum HOM05D003790 ORTHO05D004481 4.7e-31 138.7 169 50.9
BcaC07g42401 Brassica carinata HOM05D003790 ORTHO05D004481 4.7e-31 138.7 170 50.0
CARHR001970 Cardamine hirsuta HOM05D003790 ORTHO05D004481 4.7e-31 138.7 172 52.9
C08p53190 Brassica napus HOM05D003790 ORTHO05D004481 6.1e-31 138.3 170 51.2
BolC8t52834H Brassica oleracea HOM05D003790 ORTHO05D004481 6.1e-31 138.3 170 51.2
Eucgr.H01065 Eucalyptus grandis HOM05D003790 ORTHO05D004481 7.9e-31 137.9 186 48.4
HPP92_025189 Vanilla planifolia HOM05D003790 ORTHO05D004481 6.7e-30 134.8 184 46.2
EL10As5g23497 Beta vulgaris HOM05D003790 ORTHO05D004481 8.8e-30 134.4 169 50.9
SalBow2G3380 Salvia bowleyana HOM05D003790 ORTHO05D004481 8.8e-30 134.4 177 45.8
AL6G50980 Arabidopsis lyrata HOM05D003790 ORTHO05D004481 9.7e-29 131.0 174 47.7
AT4G02170 Arabidopsis thaliana HOM05D003790 ORTHO05D004481 9.7e-29 131.0 174 47.7
Thhalv10029373m.g Eutrema salsugineum HOM05D003790 ORTHO05D004481 2.8e-28 129.4 175 48.6
Hma1.2p1_1302F.1_g274340 Hydrangea macrophylla HOM05D003790 ORTHO05D004481 4.8e-28 128.6 173 51.4
Eucgr.H01062 Eucalyptus grandis HOM05D003790 ORTHO05D004481 8.2e-28 127.9 160 49.4
Sp6g02070 Schrenkiella parvula HOM05D003790 ORTHO05D004481 1.8e-27 126.7 176 46.0
BcaC01g06770 Brassica carinata HOM05D003790 ORTHO05D004481 2.4e-27 126.3 185 44.3
BcaC01g06771 Brassica carinata HOM05D003790 ORTHO05D004481 2.4e-27 126.3 185 44.3
C03p38000 Brassica napus HOM05D003790 ORTHO05D004481 2.4e-27 126.3 185 44.3
BolC3t16086H Brassica oleracea HOM05D003790 ORTHO05D004481 3.1e-27 125.9 185 44.3
Eucgr.K03525 Eucalyptus grandis HOM05D003790 ORTHO05D004481 3.1e-27 125.9 173 49.1
BcaB01g02435 Brassica carinata HOM05D003790 ORTHO05D004481 7.0e-27 124.8 176 45.5
Sc17g0000570 Simmondsia chinensis HOM05D003790 ORTHO05D004481 7.0e-27 124.8 182 45.6
BraA03t12296Z Brassica rapa HOM05D003790 ORTHO05D004481 1.6e-26 123.6 186 43.5
Oeu008453.1 Olea europaea HOM05D003688 ORTHO05D004481 1.6e-26 123.6 156 46.2
A03p31160 Brassica napus HOM05D003790 ORTHO05D004481 2.0e-26 123.2 185 43.8
Prupe.8G269600 Prunus persica HOM05D003790 ORTHO05D004481 2.0e-26 123.2 178 46.6
Eucgr.L01710 Eucalyptus grandis HOM05D003790 ORTHO05D004481 1.3e-25 120.6 175 43.4
Aa31LG5G1840 Aethionema arabicum HOM05D003790 ORTHO05D004481 3.8e-25 119.0 181 47.5
Actinidia21418 Actinidia chinensis HOM05D003790 ORTHO05D004481 1.1e-24 117.5 144 43.8
TWI75G0985 Tripterygium wilfordii HOM05D003790 ORTHO05D004481 4.2e-24 115.5 169 45.6
Carub.0006s3500 Capsella rubella HOM05D003790 ORTHO05D004481 1.2e-23 114.0 184 44.6
Eucgr.L01711 Eucalyptus grandis HOM05D003790 ORTHO05D004481 2.1e-23 113.2 153 49.0
Migut.D00101 Erythranthe guttata HOM05D003790 ORTHO05D004481 1.5e-21 107.1 181 41.4
Gohir.D12G130100 Gossypium hirsutum HOM05D003790 ORTHO05D004481 7.5e-21 104.8 151 46.4
MD11G1317200 Malus domestica HOM05D003790 ORTHO05D004481 7.5e-21 104.8 208 38.5
Eucgr.L02503 Eucalyptus grandis HOM05D003790 ORTHO05D004481 9.7e-21 104.4 182 39.6
Duzib264G0610 Durio zibethinus HOM05D003790 ORTHO05D004481 3.7e-20 102.4 170 45.9
Eucgr.E02488 Eucalyptus grandis HOM05D003790 ORTHO05D004481 3.1e-19 99.4 103 51.5
AUR62024684 Chenopodium quinoa HOM05D003790 ORTHO05D004481 7.0e-19 98.2 169 42.6
AUR62011841 Chenopodium quinoa HOM05D003790 ORTHO05D004481 1.0e-17 94.4 169 40.8
Thecc.01G102100 Theobroma cacao HOM05D003790 ORTHO05D004481 1.3e-17 94.0 166 44.6
HPP92_006897 Vanilla planifolia HOM05D003790 ORTHO05D004481 1.3e-17 94.0 102 50.0
Os03g0302800 Oryza sativa ssp. japonica HOM05D003790 ORTHO05D004481 6.5e-17 91.7 207 40.1
Eucgr.F04057 Eucalyptus grandis HOM05D003790 ORTHO05D004481 7.2e-16 88.2 104 51.9
CARHR250350 Cardamine hirsuta HOM05D003790 ORTHO05D004481 4.7e-15 85.5 123 45.5
Zm00001eb014210 Zea mays HOM05D003790 ORTHO05D004481 4.7e-15 85.5 212 38.2
Thhalv10029363m.g Eutrema salsugineum HOM05D003790 ORTHO05D004481 2.3e-14 83.2 148 45.9
Eucgr.F04083 Eucalyptus grandis HOM05D003790 ORTHO05D004481 3.0e-14 82.8 100 50.0
Eucgr.A02768 Eucalyptus grandis HOM05D003790 ORTHO05D004481 1.5e-13 80.5 102 48.0
Eucgr.L00541 Eucalyptus grandis HOM05D003790 ORTHO05D004481 2.0e-13 80.1 100 50.0
ATR0706G232 Amborella trichopoda HOM05D003790 ORTHO05D004481 7.5e-13 78.2 185 33.0
MD03G1297400 Malus domestica HOM05D003790 ORTHO05D004481 7.5e-13 78.2 213 33.3
CsaV3_4G001110 Cucumis sativus L. HOM05D003790 ORTHO05D044967 1.7e-12 77.0 156 32.7
Duzib147G1191 Durio zibethinus HOM05D003790 ORTHO05D004481 1.7e-12 77.0 175 38.9
Eucgr.H01752 Eucalyptus grandis HOM05D003790 ORTHO05D004481 3.7e-12 75.9 57 64.9
SGA_v2.0_scaffold334G49053 Striga asiatica HOM05D003790 ORTHO05D004481 1.1e-11 74.3 123 41.5
Zm00001eb396420 Zea mays HOM05D003790 ORTHO05D004481 1.1e-11 74.3 219 35.2
Nn6g33912 Nelumbo nucifera HOM05D003790 ORTHO05D004481 3.1e-11 72.8 91 47.3
SEGI_22681 Sequoiadendron giganteum HOM05D001131 ORTHO05D000972 4.1e-11 72.4 206 31.6
COL.COLO4_09960 Corchorus olitorius HOM05D003790 ORTHO05D004481 7.0e-11 71.6 176 40.3
HPP92_011875 Vanilla planifolia HOM05D003790 ORTHO05D004481 5.9e-10 68.6 184 33.2
MELO3C017926.2 Cucumis melo HOM05D003790 ORTHO05D044967 2.3e-09 66.6 157 32.5
SEGI_15713 Sequoiadendron giganteum HOM05D001131 ORTHO05D000972 4.2e-08 62.4 205 29.3
VMungo0464G2064 Vigna mungo HOM05D001131 ORTHO05D000972 1.0e-06 57.8 207 28.0
Nn2g14986 Nelumbo nucifera HOM05D003790 ORTHO05D004481 2.3e-06 56.6 48 54.2
MBI18_g24947_MAGBIO Magnolia biondii HOM05D007468 ORTHO05D009051 6.8e-06 55.1 119 36.1
Sc17g0000580 Simmondsia chinensis HOM05D003790 ORTHO05D004481 6.8e-06 55.1 136 35.3


User provided reference genes

Program Settings