Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.08G091200 Carya illinoinensis HOM05D005619 ORTHO05D006696 2.8e-92 342.0 186 100.0
CiPaw.02G192300 Carya illinoinensis HOM05D000781 ORTHO05D000643 8.1e-84 313.9 178 93.8
QL08p063145 Quercus lobata HOM05D005619 ORTHO05D006696 1.2e-79 300.1 184 79.9
Haze_17223 Corylus avellana HOM05D005619 ORTHO05D006696 4.6e-79 298.1 186 86.6
Cfa001322 Carpinus fangiana HOM05D005619 ORTHO05D006696 1.5e-77 293.1 186 84.9
Lj1g0018800 Lotus japonicus HOM05D005619 ORTHO05D006696 6.5e-73 277.7 186 73.7
Lj6g0025019 Lotus japonicus HOM05D005619 ORTHO05D006696 1.9e-72 276.2 186 74.2
arahy.Tifrunner.gnm1.ann1.IDH5I9 Arachis hypogaea HOM05D005619 ORTHO05D006696 5.5e-72 274.6 186 73.7
Medtr3g070470 Medicago truncatula HOM05D005619 ORTHO05D006696 7.1e-72 274.2 187 73.3
arahy.Tifrunner.gnm1.ann1.2YL4XG Arachis hypogaea HOM05D005619 ORTHO05D006696 1.6e-71 273.1 186 72.6
Lalb_Chr03g0027081 Lupinus albus HOM05D005619 ORTHO05D006696 3.0e-70 268.9 186 72.6
Phvul.001G242800 Phaseolus vulgaris HOM05D005619 ORTHO05D006696 5.1e-70 268.1 186 71.0
TPR.G16245 Trifolium pratense HOM05D005619 ORTHO05D006696 6.7e-70 267.7 192 69.8
Psat5g128520 Pisum sativum HOM05D005619 ORTHO05D006696 3.3e-69 265.4 182 70.9
CsaV3_6G001830 Cucumis sativus L. HOM05D005619 ORTHO05D006696 5.7e-69 264.6 186 71.5
VMungo1383G0062 Vigna mungo HOM05D005619 ORTHO05D006696 7.4e-69 264.2 184 70.7
Glyma.18G027600 Glycine max HOM05D005619 ORTHO05D006696 8.2e-68 260.8 183 72.1
Sed0003089 Sechium edule HOM05D005619 ORTHO05D006696 8.2e-68 260.8 186 69.4
Glyma.11G229600 Glycine max HOM05D005619 ORTHO05D006696 6.9e-67 257.7 183 71.0
ClCG11G006160 Citrullus lanatus HOM05D005619 ORTHO05D006696 9.0e-67 257.3 186 69.9
Thecc.10G016900 Theobroma cacao HOM05D005619 ORTHO05D006696 2.0e-66 256.1 182 70.9
Cpa.g.sc19.176 Carica papaya HOM05D005619 ORTHO05D006696 4.5e-66 255.0 186 67.7
GSVIVG01032822001 Vitis vinifera HOM05D005619 ORTHO05D006696 1.0e-65 253.8 187 69.5
CANSAT56G2799 Cannabis sativa HOM05D005619 ORTHO05D006696 3.8e-65 251.9 186 66.7
Atru.chr12.29 Acer truncatum HOM05D005619 ORTHO05D006696 5.0e-65 251.5 185 65.4
Lalb_Chr01g0004131 Lupinus albus HOM05D005619 ORTHO05D006696 5.0e-65 251.5 207 64.3
Duzib128G1619 Durio zibethinus HOM05D005619 ORTHO05D006696 2.5e-64 249.2 182 68.1
AT1G19080 Arabidopsis thaliana HOM05D005619 ORTHO05D006696 3.2e-64 248.8 186 66.1
AT3G55490 Arabidopsis thaliana HOM05D005619 ORTHO05D006696 3.2e-64 248.8 186 66.1
Gohir.A06G163800 Gossypium hirsutum HOM05D005619 ORTHO05D006696 3.2e-64 248.8 183 67.8
Gohir.D06G169500 Gossypium hirsutum HOM05D005619 ORTHO05D006696 3.2e-64 248.8 183 67.8
Gorai.010G198200 Gossypium raimondii HOM05D005619 ORTHO05D006696 3.2e-64 248.8 183 67.8
RcHm_v2.0_Chr1g0370121 Rosa chinensis HOM05D005619 ORTHO05D006696 4.2e-64 248.4 186 66.1
TAR369G0168 Trochodendron aralioides HOM05D005619 ORTHO05D006696 5.5e-64 248.1 187 65.8
BraA04t18498Z Brassica rapa HOM05D005619 ORTHO05D006696 7.2e-64 247.7 184 66.8
Duzib114G0170 Durio zibethinus HOM05D005619 ORTHO05D006696 7.2e-64 247.7 182 67.6
FAN10G0566 Fragaria x ananassa HOM05D005619 ORTHO05D006696 7.2e-64 247.7 186 65.1
FAN01G2425 Fragaria x ananassa HOM05D005619 ORTHO05D006696 9.4e-64 247.3 186 65.1
BcaNung05464 Brassica carinata HOM05D005619 ORTHO05D006696 1.2e-63 246.9 184 67.4
AL5G36640 Arabidopsis lyrata HOM05D005619 ORTHO05D006696 2.1e-63 246.1 186 65.1
CARHR165540 Cardamine hirsuta HOM05D005619 ORTHO05D006696 2.1e-63 246.1 186 64.5
FvH4_7g24440 Fragaria vesca HOM05D005619 ORTHO05D006696 2.1e-63 246.1 186 64.5
Thhalv10017287m.g Eutrema salsugineum HOM05D005619 ORTHO05D006696 2.7e-63 245.7 184 66.3
A04p30090 Brassica napus HOM05D005619 ORTHO05D006696 3.6e-63 245.4 185 67.0
CARHR135030 Cardamine hirsuta HOM05D005619 ORTHO05D006696 6.1e-63 244.6 186 66.7
Manes.04G157300 Manihot esculenta HOM05D005619 ORTHO05D006696 6.1e-63 244.6 186 66.7
Sc11g0001040 Simmondsia chinensis HOM05D005619 ORTHO05D006696 7.9e-63 244.2 183 65.6
MD01G1152600 Malus domestica HOM05D005619 ORTHO05D006696 1.4e-62 243.4 186 64.0
PGR142G0483 Punica granatum HOM05D005619 ORTHO05D006696 1.8e-62 243.0 186 67.2
THA.LOC104824313 Tarenaya hassleriana HOM05D005619 ORTHO05D006696 2.3e-62 242.7 182 65.4
Nn2g11500 Nelumbo nucifera HOM05D005619 ORTHO05D006696 3.9e-62 241.9 186 63.4
COL.COLO4_38547 Corchorus olitorius HOM05D005598 ORTHO05D006587 5.1e-62 241.5 182 68.1
Sabra08G0050000 Salix brachista HOM05D005619 ORTHO05D006696 6.7e-62 241.1 182 67.0
BolC4t28280H Brassica oleracea HOM05D005619 ORTHO05D006696 8.8e-62 240.7 182 65.9
Prupe.2G202300 Prunus persica HOM05D005619 ORTHO05D006696 1.1e-61 240.4 186 63.4
AUR62022323 Chenopodium quinoa HOM05D005619 ORTHO05D006696 2.5e-61 239.2 184 64.1
AUR62034382 Chenopodium quinoa HOM05D005619 ORTHO05D006696 2.5e-61 239.2 184 63.6
Prupe.2G249700 Prunus persica HOM05D005619 ORTHO05D006696 2.5e-61 239.2 186 62.9
Carub.0005s2221 Capsella rubella HOM05D005619 ORTHO05D006696 4.3e-61 238.4 186 62.4
BcaC02g07350 Brassica carinata HOM05D005619 ORTHO05D006696 7.4e-61 237.7 183 65.0
Hund13861 Selenicereus undatus HOM05D005619 ORTHO05D006696 7.4e-61 237.7 183 63.4
MBI05_g05306_MAGBIO Magnolia biondii HOM05D005619 ORTHO05D006696 9.7e-61 237.3 183 63.9
Potri.008G068100 Populus trichocarpa HOM05D005619 ORTHO05D006696 9.7e-61 237.3 182 65.4
Sp4g22380 Schrenkiella parvula HOM05D005619 ORTHO05D006696 9.7e-61 237.3 184 63.6
C04p67770 Brassica napus HOM05D005619 ORTHO05D006696 1.3e-60 236.9 182 65.4
Potri.010G189200 Populus trichocarpa HOM05D005619 ORTHO05D006696 2.8e-60 235.7 182 65.4
Eucgr.G03057 Eucalyptus grandis HOM05D005619 ORTHO05D006696 3.7e-60 235.3 183 65.6
Aqoxy4G02564 Aquilegia oxysepala HOM05D005619 ORTHO05D006696 8.2e-60 234.2 187 61.5
CDE04G2394 Ceratophyllum demersum HOM05D005619 ORTHO05D006696 1.1e-59 233.8 182 62.6
Lj3A878T24 Lonicera japonica HOM05D005619 ORTHO05D006696 3.1e-59 232.3 183 63.4
PSO339G2325 Papaver somniferum HOM05D005619 ORTHO05D006696 5.3e-59 231.5 187 61.0
Dinv16155 Davidia involucrata HOM05D005619 ORTHO05D006696 6.9e-59 231.1 183 62.8
Aqoxy5G02842 Aquilegia oxysepala HOM05D005619 ORTHO05D006696 1.2e-58 230.3 187 60.4
EL10Ac2g04534 Beta vulgaris HOM05D005619 ORTHO05D006696 2.0e-58 229.6 187 61.0
Ciclev10033435m.g Citrus clementina HOM05D005619 ORTHO05D006696 3.4e-58 228.8 167 67.1
Actinidia31994 Actinidia chinensis HOM05D005619 ORTHO05D006696 1.7e-57 226.5 187 61.0
CSS0006168 Camellia sinensis var. sinensis HOM05D005619 ORTHO05D006696 5.0e-57 224.9 183 62.3
TWI53G0619 Tripterygium wilfordii HOM05D005619 ORTHO05D006696 3.2e-56 222.2 171 66.1
BcaC02g07392 Brassica carinata HOM05D005619 ORTHO05D006696 4.2e-56 221.9 166 68.1
Oeu057772.1 Olea europaea HOM05D005619 ORTHO05D006696 2.7e-55 219.2 189 60.3
Hma1.2p1_2256F.1_g318210 Hydrangea macrophylla HOM05D005619 ORTHO05D006696 6.1e-55 218.0 183 60.7
HanXRQChr15g0468911 Helianthus annuus HOM05D005619 ORTHO05D006696 1.4e-54 216.9 182 61.0
DCAR_026757 Daucus carota HOM05D005619 ORTHO05D006696 3.0e-54 215.7 183 59.6
HanXRQChr08g0213181 Helianthus annuus HOM05D005619 ORTHO05D006696 3.0e-54 215.7 182 60.4
MSTRG.870 Avicennia marina HOM05D005619 ORTHO05D006696 5.1e-54 214.9 185 60.0
ECA233G2873 Erigeron canadensis HOM05D005619 ORTHO05D006696 5.1e-54 214.9 182 60.4
HanXRQChr09g0271791 Helianthus annuus HOM05D005619 ORTHO05D006696 1.5e-53 213.4 182 58.8
SGA_v2.0_scaffold170G38815 Striga asiatica HOM05D005619 ORTHO05D006696 2.0e-53 213.0 187 57.8
SalBow8G4625 Salvia bowleyana HOM05D005619 ORTHO05D006696 4.4e-53 211.8 187 57.8
Migut.E00386 Erythranthe guttata HOM05D005619 ORTHO05D006696 5.7e-53 211.5 187 57.8
Lsat_1_v5_gn_8_41961 Lactuca sativa HOM05D005619 ORTHO05D006696 5.7e-53 211.5 182 59.9
TAR633G2706 Trochodendron aralioides HOM05D005619 ORTHO05D006696 7.4e-53 211.1 142 72.5
COL.COLO4_25718 Corchorus olitorius HOM05D005619 ORTHO05D006696 1.7e-52 209.9 182 61.0
PGSC0003DMG400030566 Solanum tuberosum HOM05D005619 ORTHO05D006696 1.7e-52 209.9 185 58.9
CAN.G1489.22 Capsicum annuum HOM05D005619 ORTHO05D006696 3.7e-52 208.8 185 59.5
Peaxi162Scf00451g00930 Petunia axillaris HOM05D005619 ORTHO05D006696 4.8e-52 208.4 185 58.4
Os08g0274700 Oryza sativa ssp. japonica HOM05D005619 ORTHO05D006696 8.2e-52 207.6 185 56.8
ECA247G2146 Erigeron canadensis HOM05D005619 ORTHO05D006696 2.4e-51 206.1 182 58.2
Solyc05g008620.4 Solanum lycopersicum HOM05D005619 ORTHO05D006696 3.1e-51 205.7 185 57.8
Sopen05g004460 Solanum pennellii HOM05D005619 ORTHO05D006696 3.1e-51 205.7 185 57.8
Cc03_g10740 Coffea canephora HOM05D005619 ORTHO05D006696 9.1e-51 204.1 185 56.2
unitig_52.g17125 Utricularia gibba HOM05D005619 ORTHO05D006696 3.5e-50 202.2 185 56.8
ATR0481G004 Amborella trichopoda HOM05D005619 ORTHO05D006696 7.7e-50 201.1 183 54.6
FAN06G3728 Fragaria x ananassa HOM05D005619 ORTHO05D006696 2.9e-49 199.1 141 66.0
Zm00001eb412290 Zea mays HOM05D005619 ORTHO05D006696 3.8e-49 198.7 185 53.5
Zm00001eb198650 Zea mays HOM05D005619 ORTHO05D006696 5.0e-49 198.4 185 54.6
HPP92_000355 Vanilla planifolia HOM05D000755 ORTHO05D000642 1.4e-48 196.8 183 53.6
HPP92_000422 Vanilla planifolia HOM05D000755 ORTHO05D006696 1.9e-48 196.4 183 53.0
MELO3C029903.2 Cucumis melo HOM05D005619 ORTHO05D006696 2.3e-46 189.5 200 55.5
SMO356G0622 Selaginella moellendorffii HOM05D005619 ORTHO05D006696 4.4e-45 185.3 186 47.8
TWI73G0774 Tripterygium wilfordii HOM05D005619 ORTHO05D006696 7.4e-45 184.5 183 54.6
DCAR_023625 Daucus carota HOM05D005619 ORTHO05D006696 4.8e-44 181.8 142 62.0
Nitab4.5_0000350g0020 Nicotiana tabacum HOM05D005619 ORTHO05D006696 1.6e-42 176.8 185 54.1
Peaxi162Scf00205g01136 Petunia axillaris HOM05D005619 ORTHO05D006696 1.6e-42 176.8 146 61.6
SalBow8G2997 Salvia bowleyana HOM05D005619 ORTHO05D006696 1.7e-41 173.3 205 48.8
C04p07340 Brassica napus HOM05D004515 ORTHO05D006013 2.9e-41 172.6 170 58.8
Mapoly0034s0059 Marchantia polymorpha HOM05D005619 ORTHO05D006696 2.9e-41 172.6 183 45.4
Mapoly0053s0030 Marchantia polymorpha HOM05D005619 ORTHO05D006696 5.0e-41 171.8 183 45.4
Pp3c25_12660 Physcomitrium patens HOM05D005619 ORTHO05D006696 2.5e-40 169.5 182 46.2
CSS0006460 Camellia sinensis var. sinensis HOM05D005619 ORTHO05D006696 3.2e-40 169.1 168 54.2
Cc03_g13530 Coffea canephora HOM05D005619 ORTHO05D006696 2.1e-39 166.4 166 51.8
CARHR159370 Cardamine hirsuta HOM05D005619 ORTHO05D006696 1.0e-38 164.1 112 68.8
FAN06G2505 Fragaria x ananassa HOM05D005619 ORTHO05D006696 4.0e-38 162.2 141 58.9
Aa31LG5G19540 Aethionema arabicum HOM05D005619 ORTHO05D006696 1.2e-37 160.6 103 70.9
Sabra10G0145900 Salix brachista HOM05D005619 ORTHO05D006696 7.5e-37 157.9 182 50.5
AagrBONN_evm.TU.Sc2ySwM_228.5247 Anthoceros agrestis HOM05D005619 ORTHO05D006696 2.2e-36 156.4 183 44.3
AagrBONN_evm.TU.Sc2ySwM_344.729 Anthoceros agrestis HOM05D005619 ORTHO05D006696 4.8e-36 155.2 183 44.3
Nitab4.5_0003886g0110 Nicotiana tabacum HOM05D005619 ORTHO05D006696 1.8e-35 153.3 183 48.1
CBR_g38120 Chara braunii HOM05D005619 ORTHO05D006696 8.5e-33 144.4 187 38.0
BolC4t22357H Brassica oleracea HOM05D004515 ORTHO05D006013 1.6e-31 140.2 167 49.7
AagrBONN_evm.TU.Sc2ySwM_344.737 Anthoceros agrestis HOM05D005619 ORTHO05D006696 1.4e-22 110.5 104 51.0
BcaB08g35316 Brassica carinata HOM05D005619 ORTHO05D006696 8.9e-22 107.8 71 69.0
Actinidia33632 Actinidia chinensis HOM05D005619 ORTHO05D006696 2.2e-20 103.2 98 56.1
ATR0568G146 Amborella trichopoda HOM05D005619 ORTHO05D006696 1.2e-18 97.4 117 45.3
HanXRQChr01g0017101 Helianthus annuus HOM05D005619 ORTHO05D006696 1.6e-15 87.0 62 66.1
MCO08G248 Micromonas commoda HOM05D005619 ORTHO05D006696 2.8e-15 86.3 167 29.3
C04p07380 Brassica napus HOM05D005619 ORTHO05D006696 4.7e-15 85.5 135 39.3
HanXRQChr12g0375531 Helianthus annuus HOM05D005619 ORTHO05D006696 2.3e-14 83.2 72 52.8
Cre06.g251750 Chlamydomonas reinhardtii HOM05D005619 ORTHO05D006696 5.8e-13 78.6 129 27.9
Cfa027228 Carpinus fangiana HOM05D005619 ORTHO05D006696 1.0e-09 67.8 126 30.2
Thecc.10G017600 Theobroma cacao HOM05D009631 ORTHO05D011824 2.3e-09 66.6 83 51.8
QL03p009034 Quercus lobata HOM05D000946 ORTHO05D006696 5.0e-09 65.5 37 75.7
PRCOL_00002083 Prasinoderma coloniale HOM05D005619 ORTHO05D006696 1.1e-08 64.3 142 27.5


User provided reference genes

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