Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.08G089000 Carya illinoinensis HOM05D004421 ORTHO05D005227 3.8e-54 214.5 105 100.0
CiPaw.03G156500 Carya illinoinensis HOM05D004421 ORTHO05D005227 1.6e-52 209.1 105 97.1
vmacro09354 Vaccinium macrocarpon HOM05D004421 ORTHO05D005227 3.5e-52 208.0 103 96.1
Rhsim04G0051300 Rhododendron simsii HOM05D004421 ORTHO05D005227 5.1e-51 204.1 102 96.1
Haze_12777 Corylus avellana HOM05D004421 ORTHO05D005227 9.7e-50 199.9 103 92.2
CSS0000360 Camellia sinensis var. sinensis HOM05D004421 ORTHO05D005227 1.3e-49 199.5 103 95.1
QL08p031014 Quercus lobata HOM05D004421 ORTHO05D005227 2.2e-49 198.7 103 94.2
CSS0029217 Camellia sinensis var. sinensis HOM05D004421 ORTHO05D005227 2.8e-49 198.4 103 94.2
QL10p065608 Quercus lobata HOM05D004421 ORTHO05D005227 3.7e-49 198.0 103 94.2
Eucgr.B01010 Eucalyptus grandis HOM05D004421 ORTHO05D005227 4.8e-49 197.6 102 95.1
Cfa014325 Carpinus fangiana HOM05D004421 ORTHO05D005227 8.2e-49 196.8 103 92.2
Hma1.2p1_0445F.1_g154450 Hydrangea macrophylla HOM05D004421 ORTHO05D005227 8.2e-49 196.8 103 92.2
QL10p065434 Quercus lobata HOM05D004421 ORTHO05D005227 1.4e-48 196.1 103 93.2
TAR629G1061 Trochodendron aralioides HOM05D004421 ORTHO05D005227 3.1e-48 194.9 104 91.3
Rhsim06G0166700 Rhododendron simsii HOM05D004421 ORTHO05D005227 6.9e-48 193.7 103 90.3
DCAR_019262 Daucus carota HOM05D004421 ORTHO05D005227 9.0e-48 193.4 103 90.3
Hma1.2p1_0177F.1_g077900 Hydrangea macrophylla HOM05D004421 ORTHO05D005227 2.0e-47 192.2 103 90.3
Hma1.2p1_0177F.1_g077905 Hydrangea macrophylla HOM05D004421 ORTHO05D005227 2.0e-47 192.2 103 90.3
arahy.Tifrunner.gnm1.ann1.BKRM87 Arachis hypogaea HOM05D004421 ORTHO05D005227 2.6e-47 191.8 101 93.1
arahy.Tifrunner.gnm1.ann1.J4LN0V Arachis hypogaea HOM05D004421 ORTHO05D005227 2.6e-47 191.8 101 93.1
PGR042G0750 Punica granatum HOM05D004421 ORTHO05D005227 3.4e-47 191.4 103 91.3
DCAR_012923 Daucus carota HOM05D004421 ORTHO05D005227 4.5e-47 191.0 103 89.3
Glyma.14G047100 Glycine max HOM05D004421 ORTHO05D005227 5.9e-47 190.7 100 94.0
VMungo0647G1664 Vigna mungo HOM05D004421 ORTHO05D005227 7.7e-47 190.3 100 94.0
GSVIVG01036899001 Vitis vinifera HOM05D004421 ORTHO05D005227 7.7e-47 190.3 104 91.3
HanXRQChr04g0126911 Helianthus annuus HOM05D004421 ORTHO05D005227 1.0e-46 189.9 103 89.3
Prupe.3G211700 Prunus persica HOM05D004421 ORTHO05D005227 1.0e-46 189.9 103 92.2
Manes.13G067100 Manihot esculenta HOM05D004421 ORTHO05D005227 1.7e-46 189.1 103 92.2
Phvul.008G212200 Phaseolus vulgaris HOM05D004421 ORTHO05D005227 1.7e-46 189.1 100 92.0
Cpa.g.sc12.255 Carica papaya HOM05D004421 ORTHO05D005227 2.2e-46 188.7 101 92.1
Ciclev10009985m.g Citrus clementina HOM05D004421 ORTHO05D005227 2.2e-46 188.7 99 92.9
LjContig00564g0020145 Lotus japonicus HOM05D004421 ORTHO05D005227 2.2e-46 188.7 103 91.3
LjContig00564g0024160 Lotus japonicus HOM05D004421 ORTHO05D005227 2.2e-46 188.7 103 91.3
ClCG02G009100 Citrullus lanatus HOM05D004421 ORTHO05D005227 2.9e-46 188.3 102 89.2
TWI36G1565 Tripterygium wilfordii HOM05D004421 ORTHO05D005227 3.8e-46 188.0 103 89.3
Potri.002G225600 Populus trichocarpa HOM05D004421 ORTHO05D005227 5.0e-46 187.6 103 90.3
LjContig00564g0000485 Lotus japonicus HOM05D004421 ORTHO05D005227 6.5e-46 187.2 103 90.3
LjContig00564g0024311 Lotus japonicus HOM05D004421 ORTHO05D005227 6.5e-46 187.2 103 90.3
Psat4g220560 Pisum sativum HOM05D004421 ORTHO05D005227 6.5e-46 187.2 104 87.5
FAN02G1632 Fragaria x ananassa HOM05D004421 ORTHO05D005227 8.5e-46 186.8 103 88.3
Nitab4.5_0005588g0030 Nicotiana tabacum HOM05D004421 ORTHO05D005227 8.5e-46 186.8 103 86.4
CANSAT64G1364 Cannabis sativa HOM05D004421 ORTHO05D005227 1.1e-45 186.4 100 93.0
CsaV3_2G034620 Cucumis sativus L. HOM05D004421 ORTHO05D005227 1.1e-45 186.4 103 88.3
FvH4_6g42460 Fragaria vesca HOM05D004421 ORTHO05D005227 1.1e-45 186.4 103 88.3
FAN05G5559 Fragaria x ananassa HOM05D004421 ORTHO05D005227 1.1e-45 186.4 103 88.3
FAN09G1846 Fragaria x ananassa HOM05D004421 ORTHO05D005227 1.1e-45 186.4 103 88.3
FAN14G1774 Fragaria x ananassa HOM05D004421 ORTHO05D005227 1.1e-45 186.4 103 88.3
Lsat_1_v5_gn_7_92700 Lactuca sativa HOM05D004421 ORTHO05D005227 1.1e-45 186.4 103 86.4
RcHm_v2.0_Chr2g0158361 Rosa chinensis HOM05D004421 ORTHO05D005227 1.1e-45 186.4 103 88.3
Glyma.02G269800 Glycine max HOM05D004421 ORTHO05D005227 1.4e-45 186.0 100 92.0
Lalb_Chr10g0105671 Lupinus albus HOM05D004421 ORTHO05D005227 1.9e-45 185.7 100 91.0
Thecc.07G030200 Theobroma cacao HOM05D004421 ORTHO05D005227 2.5e-45 185.3 103 88.3
Aqoxy7G01112 Aquilegia oxysepala HOM05D004421 ORTHO05D005227 3.2e-45 184.9 102 87.3
TWI79G1637 Tripterygium wilfordii HOM05D004421 ORTHO05D005227 3.2e-45 184.9 103 88.3
Potri.014G157400 Populus trichocarpa HOM05D004421 ORTHO05D005227 5.5e-45 184.1 103 89.3
Sabra02G0172700 Salix brachista HOM05D004421 ORTHO05D005227 5.5e-45 184.1 103 88.3
Sed0012667 Sechium edule HOM05D004421 ORTHO05D005227 7.2e-45 183.7 103 87.4
CAN.G149.31 Capsicum annuum HOM05D004421 ORTHO05D005227 1.2e-44 183.0 103 86.4
ECA234G2260 Erigeron canadensis HOM05D004421 ORTHO05D005227 1.2e-44 183.0 99 87.9
Nitab4.5_0000138g0020 Nicotiana tabacum HOM05D004421 ORTHO05D005227 1.2e-44 183.0 100 87.0
Nitab4.5_0007533g0030 Nicotiana tabacum HOM05D004421 ORTHO05D005227 1.6e-44 182.6 103 85.4
ECA236G3405 Erigeron canadensis HOM05D004421 ORTHO05D005227 2.1e-44 182.2 103 86.4
Ca_23316_v3 Cicer arietinum L. HOM05D004421 ORTHO05D005227 2.7e-44 181.8 103 85.4
CAN.G358.76 Capsicum annuum HOM05D004421 ORTHO05D005227 3.6e-44 181.4 103 85.4
Lsat_1_v5_gn_5_123820 Lactuca sativa HOM05D004421 ORTHO05D005227 4.6e-44 181.0 98 86.7
Oeu013122.1 Olea europaea HOM05D004421 ORTHO05D005227 4.6e-44 181.0 103 85.4
Sc12g0002130 Simmondsia chinensis HOM05D004421 ORTHO05D005227 4.6e-44 181.0 103 88.3
Peaxi162Scf00047g00850 Petunia axillaris HOM05D004421 ORTHO05D005227 7.9e-44 180.3 103 83.5
Nitab4.5_0001288g0200 Nicotiana tabacum HOM05D004421 ORTHO05D005227 1.0e-43 179.9 103 84.5
Medtr8g099150 Medicago truncatula HOM05D004421 ORTHO05D005227 1.4e-43 179.5 101 86.1
MSTRG.12990 Avicennia marina HOM05D004421 ORTHO05D005227 1.8e-43 179.1 102 87.3
Peaxi162Scf00149g00049 Petunia axillaris HOM05D004421 ORTHO05D005227 1.8e-43 179.1 102 84.3
TPR.G1800 Trifolium pratense HOM05D004421 ORTHO05D005227 1.8e-43 179.1 103 85.4
MSTRG.14457 Avicennia marina HOM05D004421 ORTHO05D005227 2.3e-43 178.7 102 86.3
Aqoxy6G00590 Aquilegia oxysepala HOM05D004421 ORTHO05D005227 5.1e-43 177.6 100 85.0
Sopen02g017940 Solanum pennellii HOM05D004421 ORTHO05D005227 5.1e-43 177.6 103 82.5
PGSC0003DMG400010437 Solanum tuberosum HOM05D004421 ORTHO05D005227 5.1e-43 177.6 103 82.5
Medtr8g016300 Medicago truncatula HOM05D004421 ORTHO05D005227 6.7e-43 177.2 101 85.1
Duzib128G1691 Durio zibethinus HOM05D004421 ORTHO05D005227 8.8e-43 176.8 103 85.4
TPR.G7933 Trifolium pratense HOM05D004421 ORTHO05D005227 8.8e-43 176.8 103 83.5
CAN.G358.77 Capsicum annuum HOM05D004421 ORTHO05D005227 1.1e-42 176.4 103 83.5
Gorai.005G241500 Gossypium raimondii HOM05D004421 ORTHO05D005227 1.1e-42 176.4 103 83.5
Solyc02g068770.4 Solanum lycopersicum HOM05D004421 ORTHO05D005227 1.1e-42 176.4 103 81.6
unitig_748.g8294 Utricularia gibba HOM05D004421 ORTHO05D005227 3.3e-42 174.9 98 86.7
MELO3C019309.2 Cucumis melo HOM05D004421 ORTHO05D005227 4.3e-42 174.5 95 89.5
SHI33915 Sapria himalayana HOM05D004421 ORTHO05D005227 4.3e-42 174.5 103 85.4
Gohir.A03G192600 Gossypium hirsutum HOM05D004421 ORTHO05D005227 7.4e-42 173.7 103 82.5
AUR62030497 Chenopodium quinoa HOM05D004421 ORTHO05D005227 1.3e-41 172.9 100 82.0
Oeu054302.1 Olea europaea HOM05D004421 ORTHO05D005227 1.3e-41 172.9 102 81.4
PSO017G4413 Papaver somniferum HOM05D004421 ORTHO05D005227 1.3e-41 172.9 104 81.7
PSO675G5827 Papaver somniferum HOM05D004421 ORTHO05D005227 1.3e-41 172.9 104 81.7
unitig_32.g10858 Utricularia gibba HOM05D004421 ORTHO05D005227 1.3e-41 172.9 98 86.7
SalBow3G0779 Salvia bowleyana HOM05D004421 ORTHO05D005227 1.7e-41 172.6 101 81.2
AUR62030797 Chenopodium quinoa HOM05D004421 ORTHO05D005227 2.8e-41 171.8 100 81.0
CDE04G3645 Ceratophyllum demersum HOM05D004421 ORTHO05D005227 4.8e-41 171.0 98 81.6
Gohir.D02G213600 Gossypium hirsutum HOM05D004421 ORTHO05D005227 6.3e-41 170.6 103 81.6
CDE06G2669 Ceratophyllum demersum HOM05D004421 ORTHO05D005227 8.2e-41 170.2 98 81.6
ATR0665G259 Amborella trichopoda HOM05D004421 ORTHO05D005227 1.4e-40 169.5 98 82.7
EL10Ac5g12553 Beta vulgaris HOM05D004421 ORTHO05D005227 1.4e-40 169.5 103 80.6
Cc05_g14180 Coffea canephora HOM05D004421 ORTHO05D005227 2.4e-40 168.7 101 83.2
Atru.chr2.3508 Acer truncatum HOM05D004421 ORTHO05D005227 4.1e-40 167.9 101 80.2
Eucgr.B01013 Eucalyptus grandis HOM05D004421 ORTHO05D005227 4.1e-40 167.9 95 89.5
Cc05_g02530 Coffea canephora HOM05D004421 ORTHO05D005227 2.0e-39 165.6 102 80.4
SGA_v2.0_scaffold392G50685 Striga asiatica HOM05D004421 ORTHO05D005227 2.0e-39 165.6 103 78.6
Ah.12g058680 Amaranthus hybridus HOM05D004421 ORTHO05D005227 3.4e-39 164.9 103 79.6
Hund24697 Selenicereus undatus HOM05D004421 ORTHO05D005227 1.7e-38 162.5 101 81.2
MBI16_g23852_MAGBIO Magnolia biondii HOM05D004421 ORTHO05D005227 2.2e-38 162.2 99 77.8
SGA_v2.0_scaffold159G37698 Striga asiatica HOM05D004421 ORTHO05D005227 5.0e-38 161.0 98 79.6
SGA_v2.0_scaffold363G49953 Striga asiatica HOM05D004421 ORTHO05D005227 5.0e-38 161.0 103 77.7
THA.LOC104811627 Tarenaya hassleriana HOM05D004421 ORTHO05D005227 2.5e-37 158.7 99 77.8
COL.COLO4_09709 Corchorus olitorius HOM05D004421 ORTHO05D005227 9.4e-37 156.8 100 76.0
CSS0048822 Camellia sinensis var. sinensis HOM05D004421 ORTHO05D005227 2.7e-36 155.2 103 79.6
THA.LOC104813431 Tarenaya hassleriana HOM05D004421 ORTHO05D005227 3.6e-36 154.8 98 76.5
BraA02t06048Z Brassica rapa HOM05D004421 ORTHO05D005227 1.1e-34 149.8 102 69.6
C02p16370 Brassica napus HOM05D004421 ORTHO05D005227 1.5e-34 149.4 102 70.6
BolC2t07739H Brassica oleracea HOM05D004421 ORTHO05D005227 1.5e-34 149.4 102 70.6
BcaB05g22185 Brassica carinata HOM05D004421 ORTHO05D005227 2.0e-34 149.1 98 71.4
BcaB08g35879 Brassica carinata HOM05D004421 ORTHO05D005227 2.6e-34 148.7 104 69.2
A02p09830 Brassica napus HOM05D004421 ORTHO05D005227 3.3e-34 148.3 102 68.6
BcaC04g20265 Brassica carinata HOM05D004421 ORTHO05D005227 4.4e-34 147.9 102 69.6
BraA10t43337Z Brassica rapa HOM05D004421 ORTHO05D005227 4.4e-34 147.9 102 69.6
Aa31LG3G11160 Aethionema arabicum HOM05D004421 ORTHO05D005227 5.7e-34 147.5 98 70.4
Thhalv10015072m.g Eutrema salsugineum HOM05D004421 ORTHO05D005227 7.4e-34 147.1 98 71.4
Sp6g17090 Schrenkiella parvula HOM05D004421 ORTHO05D005227 1.7e-33 146.0 98 69.4
Carub.0008s1546 Capsella rubella HOM05D004421 ORTHO05D005227 3.7e-33 144.8 98 68.4
AL8G30670 Arabidopsis lyrata HOM05D004421 ORTHO05D005227 8.2e-33 143.7 98 69.4
AT5G55140 Arabidopsis thaliana HOM05D004421 ORTHO05D005227 1.1e-32 143.3 98 68.4
A05p12050 Brassica napus HOM05D004421 ORTHO05D005227 1.1e-32 143.3 103 68.9
A10p12420 Brassica napus HOM05D004421 ORTHO05D005227 1.1e-32 143.3 103 68.9
C09p45840 Brassica napus HOM05D004421 ORTHO05D005227 1.1e-32 143.3 103 68.9
BolC9t57441H Brassica oleracea HOM05D004421 ORTHO05D005227 1.1e-32 143.3 103 68.9
Zm00001eb211500 Zea mays HOM05D004421 ORTHO05D005227 4.1e-32 141.4 99 69.7
TPR.G40166 Trifolium pratense HOM05D004421 ORTHO05D005227 1.2e-31 139.8 87 80.5
HPP92_026149 Vanilla planifolia HOM05D004421 ORTHO05D005227 1.2e-31 139.8 99 65.7
CARHR268500 Cardamine hirsuta HOM05D004421 ORTHO05D005227 2.0e-31 139.0 102 66.7
vmacro12170 Vaccinium macrocarpon HOM05D004421 ORTHO05D005227 5.9e-31 137.5 88 81.8
Lj2g0010759 Lotus japonicus HOM05D004421 ORTHO05D005227 1.3e-30 136.3 103 70.9
Os08g0110100 Oryza sativa ssp. japonica HOM05D004421 ORTHO05D005227 2.2e-30 135.6 102 65.7
Dinv22240 Davidia involucrata HOM05D004421 ORTHO05D005227 4.2e-29 131.3 66 93.9
SEGI_06591 Sequoiadendron giganteum HOM05D004421 ORTHO05D005227 5.2e-27 124.4 98 59.2
BcaC03g14260 Brassica carinata HOM05D004421 ORTHO05D005227 1.1e-26 123.2 81 71.6
Eucgr.B01894 Eucalyptus grandis HOM05D004421 ORTHO05D005227 5.7e-26 120.9 65 89.2
FvH4_6g04610 Fragaria vesca HOM05D004421 ORTHO05D005227 4.8e-25 117.9 75 81.3
BraA03t14310Z Brassica rapa HOM05D004421 ORTHO05D005227 1.1e-24 116.7 96 62.5
A08p21130 Brassica napus HOM05D004421 ORTHO05D005227 2.4e-24 115.5 96 62.5
Hma1.2p1_2381F.1_g321010 Hydrangea macrophylla HOM05D004421 ORTHO05D005227 2.4e-24 115.5 87 66.7
Mapoly0058s0042 Marchantia polymorpha HOM05D004421 ORTHO05D005227 2.7e-23 112.1 87 63.2
BcaC03g14258 Brassica carinata HOM05D004421 ORTHO05D005227 4.5e-23 111.3 86 65.1
Os06g0339800 Oryza sativa ssp. japonica HOM05D004421 ORTHO05D005227 3.8e-22 108.2 97 58.8
AagrBONN_evm.TU.Sc2ySwM_344.5034 Anthoceros agrestis HOM05D004421 ORTHO05D005227 8.5e-22 107.1 88 60.2
Migut.H01800 Erythranthe guttata HOM05D004421 ORTHO05D005227 3.6e-20 101.7 56 83.9
Pp3c26_2200 Physcomitrium patens HOM05D004421 ORTHO05D005227 1.2e-18 96.7 87 57.5
Potri.010G076275 Populus trichocarpa HOM05D004421 ORTHO05D005227 2.0e-18 95.9 79 64.6
Manes.12G070801 Manihot esculenta HOM05D004421 ORTHO05D005227 2.8e-17 92.0 51 86.3
HanXRQChr16g0506671 Helianthus annuus HOM05D004421 ORTHO05D005227 3.7e-17 91.7 53 83.0
MD09G1112900 Malus domestica HOM05D004421 ORTHO05D005227 8.3e-17 90.5 53 84.9
GSVIVG01030492001 Vitis vinifera HOM05D004421 ORTHO05D005227 1.4e-16 89.7 54 85.2
RcHm_v2.0_Chr4g0419171 Rosa chinensis HOM05D004421 ORTHO05D005227 7.7e-15 84.0 103 48.5
SMO172G0081 Selaginella moellendorffii HOM05D004421 ORTHO05D005227 2.3e-11 72.4 86 46.5
Nn2g15167 Nelumbo nucifera HOM05D004421 ORTHO05D005227 7.5e-10 67.4 40 82.5
Cre05.g234659 Chlamydomonas reinhardtii HOM05D004421 ORTHO05D005227 3.5e-07 58.5 83 42.2


User provided reference genes

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