Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.08G084800 Carya illinoinensis HOM05D004068 ORTHO05D004700 5.3e-98 360.9 170 100.0
CiPaw.07G122600 Carya illinoinensis HOM05D004068 ORTHO05D004700 4.4e-76 288.1 163 80.4
Cfa004871 Carpinus fangiana HOM05D004068 ORTHO05D004700 2.4e-74 282.3 161 82.6
Haze_05111 Corylus avellana HOM05D004068 ORTHO05D004700 4.5e-73 278.1 161 81.4
GSVIVG01028194001 Vitis vinifera HOM05D004068 ORTHO05D004700 2.7e-70 268.9 164 74.4
QL12p034273 Quercus lobata HOM05D004068 ORTHO05D004700 4.0e-69 265.0 166 76.5
RcHm_v2.0_Chr3g0486891 Rosa chinensis HOM05D004068 ORTHO05D004700 1.2e-68 263.5 154 78.6
Gorai.007G119900 Gossypium raimondii HOM05D004068 ORTHO05D004700 3.1e-66 255.4 156 74.4
COL.COLO4_23168 Corchorus olitorius HOM05D004068 ORTHO05D004700 9.1e-66 253.8 157 75.2
FAN23G3049 Fragaria x ananassa HOM05D004068 ORTHO05D004700 9.1e-66 253.8 154 76.6
Prupe.3G006200 Prunus persica HOM05D004068 ORTHO05D004700 9.1e-66 253.8 155 78.1
FvH4_1g26710 Fragaria vesca HOM05D004068 ORTHO05D004700 2.7e-65 252.3 154 76.0
Duzib138G0863 Durio zibethinus HOM05D004068 ORTHO05D004700 7.7e-65 250.8 132 82.6
Hma1.2p1_0484F.1_g162840 Hydrangea macrophylla HOM05D004068 ORTHO05D004700 2.2e-64 249.2 167 72.5
Actinidia21362 Actinidia chinensis HOM05D004068 ORTHO05D004700 2.9e-64 248.8 166 72.9
Nn3g21863 Nelumbo nucifera HOM05D004068 ORTHO05D004700 1.9e-63 246.1 155 74.2
Thecc.01G321500 Theobroma cacao HOM05D004068 ORTHO05D004700 1.9e-63 246.1 132 83.3
Actinidia06383 Actinidia chinensis HOM05D004068 ORTHO05D004700 2.5e-63 245.7 139 80.6
MD09G1287000 Malus domestica HOM05D004068 ORTHO05D004700 3.2e-63 245.4 156 75.6
Manes.05G011200 Manihot esculenta HOM05D004068 ORTHO05D004700 3.2e-63 245.4 156 76.9
Ciclev10022090m.g Citrus clementina HOM05D004068 ORTHO05D004700 2.1e-62 242.7 157 78.3
FAN28G2449 Fragaria x ananassa HOM05D004068 ORTHO05D004700 2.1e-62 242.7 176 67.0
Glyma.10G009700 Glycine max HOM05D004068 ORTHO05D004700 4.7e-62 241.5 133 82.7
TAR636G1362 Trochodendron aralioides HOM05D004068 ORTHO05D004700 4.7e-62 241.5 164 72.0
TWI14G0788 Tripterygium wilfordii HOM05D004068 ORTHO05D004700 1.8e-61 239.6 158 74.1
Eucgr.H00894 Eucalyptus grandis HOM05D004068 ORTHO05D004700 2.3e-61 239.2 162 74.7
CANSAT54G1466 Cannabis sativa HOM05D004068 ORTHO05D004700 8.8e-61 237.3 129 82.2
Duzib211G0484 Durio zibethinus HOM05D004068 ORTHO05D004700 1.2e-60 236.9 157 69.4
Gohir.A07G130200 Gossypium hirsutum HOM05D004068 ORTHO05D004700 1.2e-60 236.9 130 79.2
Atru.chr5.916 Acer truncatum HOM05D004068 ORTHO05D004700 2.0e-60 236.1 163 72.4
Gorai.001G146300 Gossypium raimondii HOM05D004068 ORTHO05D004700 2.6e-60 235.7 130 78.5
Medtr1g086340 Medicago truncatula HOM05D004068 ORTHO05D004700 4.4e-60 235.0 149 77.2
TAR633G0425 Trochodendron aralioides HOM05D004068 ORTHO05D004700 5.7e-60 234.6 159 69.2
Glyma.02G009000 Glycine max HOM05D004068 ORTHO05D004700 7.5e-60 234.2 130 82.3
Gohir.D07G134600 Gossypium hirsutum HOM05D004068 ORTHO05D004700 7.5e-60 234.2 130 77.7
CSS0008406 Camellia sinensis var. sinensis HOM05D004068 ORTHO05D004700 9.8e-60 233.8 112 90.2
Potri.002G190300 Populus trichocarpa HOM05D004068 ORTHO05D004700 3.7e-59 231.9 126 81.7
Rhsim13G0001400 Rhododendron simsii HOM05D004068 ORTHO05D004700 3.7e-59 231.9 133 80.5
PGSC0003DMG400005200 Solanum tuberosum HOM05D004068 ORTHO05D004700 3.7e-59 231.9 150 74.7
Nitab4.5_0004218g0050 Nicotiana tabacum HOM05D004068 ORTHO05D004700 4.9e-59 231.5 112 90.2
MELO3C023625.2 Cucumis melo HOM05D004068 ORTHO05D004700 8.3e-59 230.7 162 69.8
Solyc01g068030.3 Solanum lycopersicum HOM05D004068 ORTHO05D004700 1.4e-58 229.9 150 74.0
MSTRG.18070 Avicennia marina HOM05D004068 ORTHO05D004700 1.8e-58 229.6 134 79.1
Cpa.g.sc67.88 Carica papaya HOM05D004068 ORTHO05D004700 1.8e-58 229.6 148 74.3
Lalb_Chr06g0167051 Lupinus albus HOM05D004068 ORTHO05D004700 1.8e-58 229.6 136 77.2
CsaV3_7G030310 Cucumis sativus L. HOM05D004068 ORTHO05D004700 2.4e-58 229.2 160 70.0
Peaxi162Scf00919g00026 Petunia axillaris HOM05D004068 ORTHO05D004700 2.4e-58 229.2 112 88.4
MBI19_g32706_MAGBIO Magnolia biondii HOM05D004068 ORTHO05D004700 3.1e-58 228.8 150 71.3
Sopen01g029950 Solanum pennellii HOM05D004068 ORTHO05D004700 1.2e-57 226.9 150 73.3
Sed0027961 Sechium edule HOM05D004068 ORTHO05D004700 1.6e-57 226.5 160 68.1
FAN26G1054 Fragaria x ananassa HOM05D004068 ORTHO05D004700 2.0e-57 226.1 207 56.0
PGR083G2849 Punica granatum HOM05D004068 ORTHO05D004700 4.5e-57 224.9 150 71.3
Solyc01g068020.4 Solanum lycopersicum HOM05D004068 ORTHO05D004700 4.5e-57 224.9 150 72.0
Sopen01g029940 Solanum pennellii HOM05D004068 ORTHO05D004700 4.5e-57 224.9 150 72.0
CAN.G100.22 Capsicum annuum HOM05D004068 ORTHO05D004700 5.9e-57 224.6 150 72.0
Gohir.A11G106800 Gossypium hirsutum HOM05D004068 ORTHO05D004700 1.3e-56 223.4 139 74.8
Potri.014G115400 Populus trichocarpa HOM05D004068 ORTHO05D004700 1.3e-56 223.4 126 77.8
Migut.D00035 Erythranthe guttata HOM05D004068 ORTHO05D004700 2.3e-56 222.6 141 74.5
Nitab4.5_0000222g0260 Nicotiana tabacum HOM05D004068 ORTHO05D004700 2.9e-56 222.2 112 85.7
HanXRQChr16g0512461 Helianthus annuus HOM05D004068 ORTHO05D004700 6.6e-56 221.1 156 68.6
SalBow6G1478 Salvia bowleyana HOM05D004068 ORTHO05D004700 1.1e-55 220.3 112 87.5
FAN19G0978 Fragaria x ananassa HOM05D004068 ORTHO05D004700 2.5e-55 219.2 208 55.8
Sed0019105 Sechium edule HOM05D004068 ORTHO05D004700 2.5e-55 219.2 160 65.6
Sc17g0000200 Simmondsia chinensis HOM05D004068 ORTHO05D004700 3.3e-55 218.8 158 67.1
EL10As5g23587 Beta vulgaris HOM05D004068 ORTHO05D004700 1.2e-54 216.9 134 72.4
PSO357G0073 Papaver somniferum HOM05D004068 ORTHO05D004700 1.2e-54 216.9 125 76.0
PSO170G5617 Papaver somniferum HOM05D004068 ORTHO05D004700 3.6e-54 215.3 152 63.8
AUR62011741 Chenopodium quinoa HOM05D004068 ORTHO05D004700 8.0e-54 214.2 130 73.1
unitig_90.g27445 Utricularia gibba HOM05D004068 ORTHO05D004700 1.0e-53 213.8 152 65.1
Gohir.D11G111800 Gossypium hirsutum HOM05D004068 ORTHO05D004700 1.8e-53 213.0 106 84.9
PGR083G1259 Punica granatum HOM05D004068 ORTHO05D004700 4.0e-53 211.8 150 67.3
Cc01_g21940 Coffea canephora HOM05D004068 ORTHO05D004700 5.2e-53 211.5 118 80.5
MD17G1279300 Malus domestica HOM05D004068 ORTHO05D004700 8.9e-53 210.7 140 74.3
CARHR001800 Cardamine hirsuta HOM05D004068 ORTHO05D004700 1.5e-52 209.9 122 73.0
AUR62024574 Chenopodium quinoa HOM05D004068 ORTHO05D004700 1.5e-52 209.9 131 71.8
ECA236G4612 Erigeron canadensis HOM05D004068 ORTHO05D004700 2.0e-52 209.5 107 83.2
Thhalv10008722m.g Eutrema salsugineum HOM05D004068 ORTHO05D004700 2.0e-52 209.5 123 74.8
A10p01270 Brassica napus HOM05D004068 ORTHO05D004700 2.6e-52 209.1 126 73.0
C05p01270 Brassica napus HOM05D004068 ORTHO05D004700 2.6e-52 209.1 126 73.0
SGA_v2.0_scaffold417G51268 Striga asiatica HOM05D004068 ORTHO05D004700 2.6e-52 209.1 122 77.0
AL1G11820 Arabidopsis lyrata HOM05D004068 ORTHO05D004700 3.4e-52 208.8 123 74.0
BcaB03g15774 Brassica carinata HOM05D004068 ORTHO05D004700 9.8e-52 207.2 126 70.6
AT1G02475 Arabidopsis thaliana HOM05D004068 ORTHO05D004700 1.3e-51 206.8 123 73.2
HPP92_010032 Vanilla planifolia HOM05D004068 ORTHO05D004700 1.3e-51 206.8 144 64.6
Carub.0001s0155 Capsella rubella HOM05D004068 ORTHO05D004700 2.2e-51 206.1 122 72.1
Sp1g01550 Schrenkiella parvula HOM05D004068 ORTHO05D004700 2.4e-50 202.6 131 68.7
Aa31LG1G10110 Aethionema arabicum HOM05D004068 ORTHO05D004700 7.0e-50 201.1 165 58.8
THA.LOC104801318 Tarenaya hassleriana HOM05D004068 ORTHO05D004700 9.2e-50 200.7 145 65.5
Aqoxy2G02578 Aquilegia oxysepala HOM05D004068 ORTHO05D004700 1.2e-49 200.3 102 86.3
ATR0693G403 Amborella trichopoda HOM05D004068 ORTHO05D004700 3.5e-49 198.7 130 66.9
HanXRQChr06g0168031 Helianthus annuus HOM05D004068 ORTHO05D004700 4.6e-49 198.4 106 78.3
Lsat_1_v5_gn_8_167400 Lactuca sativa HOM05D004068 ORTHO05D004700 5.9e-49 198.0 99 87.9
DCAR_018255 Daucus carota HOM05D004068 ORTHO05D004700 1.1e-47 193.7 121 73.6
Zm00001eb131060 Zea mays HOM05D004068 ORTHO05D004700 1.5e-47 193.4 125 69.6
Carub.0006s3535 Capsella rubella HOM05D004068 ORTHO05D004700 7.3e-47 191.0 158 58.9
Sabra14G0085500 Salix brachista HOM05D004068 ORTHO05D004700 1.6e-46 189.9 138 63.8
BolC5t28909H Brassica oleracea HOM05D004068 ORTHO05D004700 3.6e-46 188.7 128 68.0
BraA10t42405Z Brassica rapa HOM05D004068 ORTHO05D004700 3.6e-46 188.7 127 67.7
AT4G01883 Arabidopsis thaliana HOM05D004068 ORTHO05D004700 1.4e-45 186.8 122 65.6
Hund09678 Selenicereus undatus HOM05D004068 ORTHO05D004700 1.8e-45 186.4 99 80.8
Sp6g01730 Schrenkiella parvula HOM05D004068 ORTHO05D004700 3.1e-45 185.7 122 67.2
BcaB01g02105 Brassica carinata HOM05D004068 ORTHO05D004700 4.0e-45 185.3 112 69.6
CAN.G100.23 Capsicum annuum HOM05D004068 ORTHO05D004700 5.2e-45 184.9 97 79.4
Thhalv10028926m.g Eutrema salsugineum HOM05D004068 ORTHO05D004700 5.2e-45 184.9 113 69.0
Thhalv10028927m.g Eutrema salsugineum HOM05D004068 ORTHO05D004700 5.2e-45 184.9 113 69.0
AL6G51410 Arabidopsis lyrata HOM05D004068 ORTHO05D004700 3.4e-44 182.2 125 64.0
BcaC04g24068 Brassica carinata HOM05D004068 ORTHO05D004700 4.4e-44 181.8 110 68.2
THA.LOC104801319 Tarenaya hassleriana HOM05D004068 ORTHO05D004700 2.2e-43 179.5 119 68.1
Sabra02G0165200 Salix brachista HOM05D004068 ORTHO05D004700 3.2e-42 175.6 114 73.7
CSS0047755 Camellia sinensis var. sinensis HOM05D004068 ORTHO05D004700 4.1e-42 175.3 148 60.1
C09p01400 Brassica napus HOM05D004068 ORTHO05D004700 9.2e-42 174.1 112 65.2
BolC9t53073H Brassica oleracea HOM05D004068 ORTHO05D004700 4.6e-41 171.8 118 61.9
AL1G11810 Arabidopsis lyrata HOM05D004068 ORTHO05D004700 6.0e-41 171.4 119 59.7
CSS0031477 Camellia sinensis var. sinensis HOM05D004068 ORTHO05D004700 6.0e-41 171.4 148 59.5
Phvul.007G211200 Phaseolus vulgaris HOM05D004068 ORTHO05D004700 7.8e-41 171.0 123 69.9
SEGI_19128 Sequoiadendron giganteum HOM05D004068 ORTHO05D004700 7.8e-41 171.0 106 66.0
AT1G02470 Arabidopsis thaliana HOM05D004068 ORTHO05D004700 1.7e-40 169.9 117 59.0
Carub.0001s0154 Capsella rubella HOM05D004068 ORTHO05D004700 2.3e-40 169.5 123 56.9
CDE02G2955 Ceratophyllum demersum HOM05D000037 ORTHO05D001684 3.0e-40 169.1 156 53.8
CARHR001790 Cardamine hirsuta HOM05D004068 ORTHO05D004700 8.6e-40 167.5 123 55.3
BcaC07g42396 Brassica carinata HOM05D004068 ORTHO05D004700 1.2e-38 163.7 99 71.7
Lj1A11T70 Lonicera japonica HOM05D004068 ORTHO05D004700 1.6e-38 163.3 152 57.2
CARHR249850 Cardamine hirsuta HOM05D004068 ORTHO05D004700 4.7e-38 161.8 109 63.3
VMungo0720G2238 Vigna mungo HOM05D004068 ORTHO05D004700 1.4e-37 160.2 112 67.9
Thhalv10008621m.g Eutrema salsugineum HOM05D004068 ORTHO05D004700 1.8e-37 159.8 128 53.1
Mapoly0066s0015 Marchantia polymorpha HOM05D004068 ORTHO05D004700 1.8e-37 159.8 104 64.4
Lj5g0018153 Lotus japonicus HOM05D004068 ORTHO05D004700 2.3e-37 159.5 105 70.5
Aa31LG1G10100 Aethionema arabicum HOM05D004068 ORTHO05D004700 5.2e-37 158.3 115 56.5
THA.LOC104801317 Tarenaya hassleriana HOM05D004068 ORTHO05D004700 8.9e-37 157.5 112 58.9
Sp1g01540 Schrenkiella parvula HOM05D004068 ORTHO05D004700 3.4e-36 155.6 106 56.6
AagrBONN_evm.TU.Sc2ySwM_228.3301 Anthoceros agrestis HOM05D004068 ORTHO05D004700 9.8e-36 154.1 104 59.6
Ca_10252_v3 Cicer arietinum L. HOM05D004068 ORTHO05D004700 1.3e-35 153.7 114 61.4
arahy.Tifrunner.gnm1.ann1.20WW32 Arachis hypogaea HOM05D004068 ORTHO05D004700 2.9e-35 152.5 94 76.6
Psat6g159440 Pisum sativum HOM05D004068 ORTHO05D004700 2.9e-35 152.5 96 72.9
A10p01260 Brassica napus HOM05D004068 ORTHO05D004700 4.9e-35 151.8 128 50.0
BraA10t42404Z Brassica rapa HOM05D004068 ORTHO05D004700 4.9e-35 151.8 128 50.0
A09p68650 Brassica napus HOM05D004068 ORTHO05D004700 6.4e-35 151.4 106 54.7
C05p01260 Brassica napus HOM05D004068 ORTHO05D004700 6.4e-35 151.4 128 50.0
BraA09t42208Z Brassica rapa HOM05D004068 ORTHO05D004700 6.4e-35 151.4 106 54.7
Pp3c26_7940 Physcomitrium patens HOM05D004068 ORTHO05D004700 1.1e-34 150.6 104 58.7
arahy.Tifrunner.gnm1.ann1.G5UTBZ Arachis hypogaea HOM05D004068 ORTHO05D004700 1.9e-34 149.8 94 75.5
BcaC07g42395 Brassica carinata HOM05D004068 ORTHO05D004700 3.2e-34 149.1 106 53.8
C08p53250 Brassica napus HOM05D004068 ORTHO05D004700 3.2e-34 149.1 106 53.8
BolC8t52840H Brassica oleracea HOM05D004068 ORTHO05D004700 3.2e-34 149.1 106 53.8
ClCG09G004770 Citrullus lanatus HOM05D004068 ORTHO05D004700 5.4e-34 148.3 174 51.1
SMO134G0067 Selaginella moellendorffii HOM05D004068 ORTHO05D004700 1.6e-33 146.7 95 61.1
Pp3c9_13510 Physcomitrium patens HOM05D004068 ORTHO05D004700 3.9e-32 142.1 104 53.8
Dinv12104 Davidia involucrata HOM05D004068 ORTHO05D004700 1.6e-30 136.7 108 60.2
HPP92_015252 Vanilla planifolia HOM05D004068 ORTHO05D004700 1.6e-30 136.7 68 82.4
CBR_g29411 Chara braunii HOM05D004068 ORTHO05D004700 6.2e-30 134.8 104 50.0
vmacro09333 Vaccinium macrocarpon HOM05D004068 ORTHO05D004700 6.8e-29 131.3 65 90.8
Aa31LG5G1470 Aethionema arabicum HOM05D004068 ORTHO05D004700 3.8e-27 125.6 126 52.4
TPR.G3089 Trifolium pratense HOM05D004068 ORTHO05D004700 1.4e-26 123.6 117 53.8
Ah.02g112620 Amaranthus hybridus HOM05D004068 ORTHO05D004700 7.1e-26 121.3 63 81.0
BraA09t35801Z Brassica rapa HOM05D004068 ORTHO05D004700 4.6e-25 118.6 99 51.5
CAN.G257.121 Capsicum annuum HOM05D004068 ORTHO05D004700 3.3e-23 112.5 106 55.7
Cre14.g616250 Chlamydomonas reinhardtii HOM05D004068 ORTHO05D004700 3.3e-23 112.5 114 43.0
MCO03G258 Micromonas commoda HOM05D004068 ORTHO05D004700 4.9e-19 98.6 103 39.8
PRCOL_00002997 Prasinoderma coloniale HOM05D004068 ORTHO05D004700 7.1e-18 94.7 148 33.1
Oeu052569.2 Olea europaea HOM05D004068 ORTHO05D004700 1.2e-17 94.0 63 73.0
Oeu044746.1 Olea europaea HOM05D004068 ORTHO05D004700 5.6e-15 85.1 60 66.7
Glyma.19G225300 Glycine max HOM05D004068 ORTHO05D004700 2.8e-14 82.8 85 50.6
Os01g0328600 Oryza sativa ssp. japonica HOM05D004068 ORTHO05D004700 8.1e-14 81.3 66 57.6
BcaC03g18203 Brassica carinata HOM05D004068 ORTHO05D004700 7.6e-12 74.7 51 58.8
A02p42700 Brassica napus HOM05D004068 ORTHO05D004700 2.9e-11 72.8 49 59.2
C02p62690 Brassica napus HOM05D004068 ORTHO05D004700 2.9e-11 72.8 49 59.2
A09p01340 Brassica napus HOM05D004068 ORTHO05D004700 3.2e-10 69.3 54 57.4
BolC8t52839H Brassica oleracea HOM05D004068 ORTHO05D004700 7.4e-07 58.2 51 58.8


User provided reference genes

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