Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.08G081800 Carya illinoinensis HOM05D005434 ORTHO05D006412 0.0e+00 1544.3 803 100.0
QL12p035062 Quercus lobata HOM05D005434 ORTHO05D006412 1.4e-241 840.1 797 61.7
Haze_05156 Corylus avellana HOM05D005434 ORTHO05D006412 2.9e-218 762.7 762 60.0
CiPaw.07G126300 Carya illinoinensis HOM05D005434 ORTHO05D006412 4.9e-170 602.4 595 60.5
Atru.chr5.851 Acer truncatum HOM05D005434 ORTHO05D006412 2.4e-164 583.6 829 45.0
Manes.05G008100 Manihot esculenta HOM05D005434 ORTHO05D006412 8.7e-159 565.1 829 44.6
Thecc.01G326300 Theobroma cacao HOM05D005434 ORTHO05D006412 8.7e-159 565.1 817 45.4
Potri.002G186200 Populus trichocarpa HOM05D005434 ORTHO05D006412 4.6e-152 542.7 876 42.2
Duzib133G0025 Durio zibethinus HOM05D005434 ORTHO05D006412 4.4e-150 536.2 772 45.2
Potri.014G111500 Populus trichocarpa HOM05D005434 ORTHO05D006412 1.0e-146 525.0 877 41.5
Dinv12078 Davidia involucrata HOM05D005434 ORTHO05D006412 6.1e-144 515.8 706 47.0
Duzib138G0614 Durio zibethinus HOM05D005434 ORTHO05D006412 1.5e-142 511.1 814 43.0
MD09G1291300 Malus domestica HOM05D005434 ORTHO05D006412 3.3e-142 510.0 848 42.1
Prupe.3G001600 Prunus persica HOM05D005434 ORTHO05D006412 2.2e-141 507.3 787 43.3
RcHm_v2.0_Chr3g0485651 Rosa chinensis HOM05D005434 ORTHO05D006412 1.6e-139 501.1 834 41.2
Actinidia20964 Actinidia chinensis HOM05D005434 ORTHO05D006412 6.5e-138 495.7 826 41.6
COL.COLO4_23119 Corchorus olitorius HOM05D005434 ORTHO05D006412 2.7e-136 490.3 815 41.8
Gorai.001G148200 Gossypium raimondii HOM05D005434 ORTHO05D006412 6.7e-135 485.7 812 42.1
MD17G1286100 Malus domestica HOM05D005434 ORTHO05D006412 4.4e-134 483.0 851 39.2
Gohir.A07G131800 Gossypium hirsutum HOM05D005434 ORTHO05D006412 6.5e-130 469.2 811 41.6
Sabra14G0081900 Salix brachista HOM05D005434 ORTHO05D006412 1.4e-127 461.5 857 39.4
Gohir.A11G105400 Gossypium hirsutum HOM05D005434 ORTHO05D006412 1.8e-127 461.1 874 38.9
Gohir.D11G110300 Gossypium hirsutum HOM05D005434 ORTHO05D006412 2.6e-126 457.2 873 38.6
Gorai.007G117900 Gossypium raimondii HOM05D005434 ORTHO05D006412 9.8e-126 455.3 875 38.4
Glyma.02G007100 Glycine max HOM05D005434 ORTHO05D006412 1.7e-125 454.5 817 39.9
Rhsim02G0256300 Rhododendron simsii HOM05D005434 ORTHO05D006412 3.5e-123 446.8 804 40.2
FvH4_1g26160 Fragaria vesca HOM05D005434 ORTHO05D006412 4.5e-123 446.4 907 36.9
Glyma.10G138700 Glycine max HOM05D005434 ORTHO05D006412 1.0e-122 445.3 854 38.3
FAN19G2204 Fragaria x ananassa HOM05D005434 ORTHO05D006412 1.6e-120 438.0 907 36.7
Sed0026347 Sechium edule HOM05D005434 ORTHO05D006412 2.1e-120 437.6 816 39.5
Lj5g0001301 Lotus japonicus HOM05D005434 ORTHO05D006412 6.8e-119 432.6 837 38.1
Sed0005889 Sechium edule HOM05D005434 ORTHO05D006412 1.5e-118 431.4 848 38.0
Gohir.D07G136100 Gossypium hirsutum HOM05D005434 ORTHO05D006412 5.7e-118 429.5 761 41.0
CANSAT25G2989 Cannabis sativa HOM05D005434 ORTHO05D006412 2.2e-117 427.6 929 36.3
TWI14G0253 Tripterygium wilfordii HOM05D005434 ORTHO05D006412 2.2e-117 427.6 891 37.6
FAN23G2884 Fragaria x ananassa HOM05D005434 ORTHO05D006412 9.2e-116 422.2 907 36.3
ClCG02G017720 Citrullus lanatus HOM05D005434 ORTHO05D006412 1.2e-115 421.8 797 39.5
FAN26G2209 Fragaria x ananassa HOM05D005434 ORTHO05D006412 6.6e-114 416.0 889 36.7
Phvul.007G208600 Phaseolus vulgaris HOM05D005434 ORTHO05D006412 8.6e-114 415.6 821 38.6
TAR365G0925 Trochodendron aralioides HOM05D005434 ORTHO05D006412 1.6e-112 411.4 831 37.9
TAR636G0087 Trochodendron aralioides HOM05D005434 ORTHO05D006412 2.1e-112 411.0 809 38.1
CsaV3_6G012840 Cucumis sativus L. HOM05D005434 ORTHO05D006412 7.0e-108 396.0 822 36.9
TPR.G3083 Trifolium pratense HOM05D005434 ORTHO05D006412 2.0e-107 394.4 805 37.1
Psat6g158560 Pisum sativum HOM05D005434 ORTHO05D006412 1.7e-106 391.3 820 37.4
arahy.Tifrunner.gnm1.ann1.G6BN46 Arachis hypogaea HOM05D005434 ORTHO05D006412 2.1e-104 384.4 852 35.4
MELO3C013628.2 Cucumis melo HOM05D005434 ORTHO05D006412 3.1e-103 380.6 808 36.6
VMungo0720G1215 Vigna mungo HOM05D005434 ORTHO05D006412 5.8e-102 376.3 781 37.8
Ca_10237_v3 Cicer arietinum L. HOM05D005434 ORTHO05D006412 3.0e-98 364.0 799 36.4
Ciclev10019510m.g Citrus clementina HOM05D005434 ORTHO05D006412 8.6e-98 362.5 580 42.6
FAN28G1136 Fragaria x ananassa HOM05D005434 ORTHO05D006412 1.9e-97 361.3 953 32.9
Medtr1g085710 Medicago truncatula HOM05D005434 ORTHO05D006412 4.0e-95 353.6 837 35.7
Sp4g28980 Schrenkiella parvula HOM05D005434 ORTHO05D006412 1.3e-93 348.6 831 33.3
PGR142G2929 Punica granatum HOM05D005434 ORTHO05D006412 5.1e-90 336.7 986 31.7
AT2G46980 Arabidopsis thaliana HOM05D005434 ORTHO05D006412 4.3e-89 333.6 840 32.9
SHI34042 Sapria himalayana HOM05D005434 ORTHO05D006412 1.2e-88 332.0 805 35.2
AL4G46460 Arabidopsis lyrata HOM05D005434 ORTHO05D006412 1.2e-86 325.5 826 33.3
CARHR142350 Cardamine hirsuta HOM05D005434 ORTHO05D006412 1.7e-85 321.6 838 32.2
Thhalv10001318m.g Eutrema salsugineum HOM05D005434 ORTHO05D006412 1.4e-84 318.5 833 34.0
PSO210G4596 Papaver somniferum HOM05D005434 ORTHO05D006412 1.4e-84 318.5 914 33.8
BraA05t19085Z Brassica rapa HOM05D005434 ORTHO05D006412 2.7e-83 314.3 830 32.5
Nn3g21972 Nelumbo nucifera HOM05D005434 ORTHO05D006412 1.0e-82 312.4 927 31.8
Aa31LG1G28350 Aethionema arabicum HOM05D005434 ORTHO05D006412 3.9e-82 310.5 834 32.5
CSS0010810 Camellia sinensis var. sinensis HOM05D005434 ORTHO05D006412 1.5e-81 308.5 593 40.1
C04p00990 Brassica napus HOM05D005434 ORTHO05D006412 1.9e-81 308.1 827 32.8
MBI18_g03842_MAGBIO Magnolia biondii HOM05D005434 ORTHO05D006412 1.9e-81 308.1 843 33.1
GSVIVG01028240001 Vitis vinifera HOM05D005434 ORTHO05D006412 1.6e-80 305.1 596 39.6
DCAR_002941 Daucus carota HOM05D005434 ORTHO05D006412 2.8e-80 304.3 822 31.8
Cpa.g.sc57.27 Carica papaya HOM05D005434 ORTHO05D006412 1.4e-79 302.0 762 34.0
Aqoxy2G02439 Aquilegia oxysepala HOM05D005434 ORTHO05D006412 9.0e-79 299.3 877 31.2
Carub.0004s2971 Capsella rubella HOM05D005434 ORTHO05D006412 1.2e-78 298.9 824 31.2
DCAR_005712 Daucus carota HOM05D005434 ORTHO05D006412 3.2e-76 290.8 959 30.2
BolC4t21751H Brassica oleracea HOM05D005434 ORTHO05D006412 3.5e-75 287.3 811 31.7
Eucgr.K00557 Eucalyptus grandis HOM05D005434 ORTHO05D006412 3.0e-74 284.3 843 31.6
Migut.D00008 Erythranthe guttata HOM05D005434 ORTHO05D006412 3.3e-73 280.8 834 30.9
Cc01_g21750 Coffea canephora HOM05D005434 ORTHO05D006412 9.6e-73 279.3 825 31.5
BcaC02g12826 Brassica carinata HOM05D005434 ORTHO05D006412 1.1e-71 275.8 820 31.3
Oeu052591.1 Olea europaea HOM05D005434 ORTHO05D006412 2.4e-71 274.6 766 31.7
A05p00820 Brassica napus HOM05D005434 ORTHO05D006412 4.5e-70 270.4 775 31.6
BcaC02g12619 Brassica carinata HOM05D005434 ORTHO05D006412 4.9e-69 266.9 626 33.9
TWI23G0760 Tripterygium wilfordii HOM05D005434 ORTHO05D006412 1.4e-68 265.4 576 35.8
MBI19_g04828_MAGBIO Magnolia biondii HOM05D005434 ORTHO05D006412 1.9e-68 265.0 840 30.4
arahy.Tifrunner.gnm1.ann1.9BA1LG Arachis hypogaea HOM05D005434 ORTHO05D006412 3.2e-68 264.2 652 34.0
PGSC0003DMG400001122 Solanum tuberosum HOM05D005434 ORTHO05D006412 1.3e-66 258.8 831 30.4
Peaxi162Scf00309g00625 Petunia axillaris HOM05D005434 ORTHO05D006412 5.6e-65 253.4 840 31.0
Solyc01g079080.3 Solanum lycopersicum HOM05D005434 ORTHO05D006412 9.6e-65 252.7 833 30.0
Sopen01g030590 Solanum pennellii HOM05D005434 ORTHO05D006412 2.4e-63 248.1 834 30.0
CAN.G179.30 Capsicum annuum HOM05D005434 ORTHO05D006412 6.9e-63 246.5 831 30.1
Lj1A7T44 Lonicera japonica HOM05D005434 ORTHO05D006412 2.1e-59 235.0 504 37.1
ECA247G2130 Erigeron canadensis HOM05D005434 ORTHO05D008082 4.6e-59 233.8 806 29.2
Lsat_1_v5_gn_9_7120 Lactuca sativa HOM05D005434 ORTHO05D006412 6.2e-56 223.4 810 29.4
Nitab4.5_0000222g0380 Nicotiana tabacum HOM05D005434 ORTHO05D006412 1.8e-55 221.9 816 28.3
Dinv33176 Davidia involucrata HOM05D005434 ORTHO05D006412 3.1e-55 221.1 442 38.7
Actinidia25873 Actinidia chinensis HOM05D005434 ORTHO05D006412 5.8e-54 216.9 645 32.2
Lalb_Chr02g0147191 Lupinus albus HOM05D005434 ORTHO05D006412 5.8e-54 216.9 583 33.6
AUR62011691 Chenopodium quinoa HOM05D005434 ORTHO05D006412 1.3e-53 215.7 827 29.9
CiPaw.07G126400 Carya illinoinensis HOM05D005434 ORTHO05D006412 9.3e-52 209.5 141 79.4
EL10Ac4g10377 Beta vulgaris HOM05D005434 ORTHO05D006412 4.6e-51 207.2 804 29.4
Lalb_Chr02g0147201 Lupinus albus HOM05D005434 ORTHO05D006412 1.0e-50 206.1 208 54.3
Sc17g0000070 Simmondsia chinensis HOM05D005434 ORTHO05D006412 3.9e-50 204.1 820 28.5
AUR62024551 Chenopodium quinoa HOM05D005434 ORTHO05D006412 4.3e-49 200.7 828 29.0
Lj1A7G43 Lonicera japonica HOM05D005434 ORTHO05D006412 1.4e-47 195.7 236 46.6
Nitab4.5_0003092g0060 Nicotiana tabacum HOM05D005434 ORTHO05D006412 3.4e-46 191.0 892 26.3
SGA_v2.0_scaffold310G48189 Striga asiatica HOM05D005434 ORTHO05D006412 8.8e-42 176.4 814 29.1
SGA_v2.0_scaffold417G51248 Striga asiatica HOM05D005434 ORTHO05D006412 1.4e-39 169.1 897 27.1
GSVIVG01028239001 Vitis vinifera HOM05D005434 ORTHO05D006412 8.5e-37 159.8 137 58.4
Zm00001eb233800 Zea mays HOM05D005434 ORTHO05D006412 1.4e-31 142.5 761 25.4
HPP92_011320 Vanilla planifolia HOM05D005434 ORTHO05D006412 2.4e-31 141.7 906 24.6
Sc17g0000050 Simmondsia chinensis HOM05D005434 ORTHO05D006412 1.5e-30 139.0 176 44.3
Dinv33178 Davidia involucrata HOM05D005434 ORTHO05D006412 1.9e-28 132.1 109 62.4
BcaB07g33880 Brassica carinata HOM05D005434 ORTHO05D006412 9.4e-28 129.8 364 31.0
CDE02G0039 Ceratophyllum demersum HOM05D005434 ORTHO05D006412 3.0e-26 124.8 162 47.5
Os10g0405500 Oryza sativa ssp. japonica HOM05D005434 ORTHO05D006412 1.5e-25 122.5 713 25.7
Ciclev10023478m.g Citrus clementina HOM05D005434 ORTHO05D006412 3.1e-23 114.8 95 62.1
Dinv33187 Davidia involucrata HOM05D005434 ORTHO05D006412 1.2e-17 96.3 284 31.3
unitig_62.g23901 Utricularia gibba HOM05D005434 ORTHO05D006412 9.7e-17 93.2 254 30.7
Actinidia21335 Actinidia chinensis HOM05D005434 ORTHO05D006412 3.7e-16 91.3 118 44.1
BolC3t15425H Brassica oleracea HOM05D005434 ORTHO05D006412 9.1e-15 86.7 142 36.6
SEGI_30180 Sequoiadendron giganteum HOM05D005434 ORTHO05D006412 9.1e-15 86.7 246 27.6
C03p30750 Brassica napus HOM05D005434 ORTHO05D011138 2.2e-13 82.0 139 38.8
FAN12G4172 Fragaria x ananassa HOM05D005434 ORTHO05D006412 1.9e-12 79.0 164 36.0
PGSC0003DMG400023095 Solanum tuberosum HOM05D005434 ORTHO05D007977 7.2e-12 77.0 133 37.6
BcaC01g05050 Brassica carinata HOM05D005434 ORTHO05D006412 6.8e-10 70.5 92 42.4
vmacro08149 Vaccinium macrocarpon HOM05D005434 ORTHO05D006412 7.5e-09 67.0 181 33.7
Mapoly0021s0152 Marchantia polymorpha HOM05D022252 ORTHO05D006412 2.2e-08 65.5 260 24.6
FvH4_4g08230 Fragaria vesca HOM05D005434 ORTHO05D006412 6.3e-08 63.9 146 34.2
Dinv33188 Davidia involucrata HOM05D005434 ORTHO05D006412 8.3e-08 63.5 101 43.6
CDE08G1326 Ceratophyllum demersum HOM05D005434 ORTHO05D006412 1.4e-07 62.8 74 44.6
SMO367G0284 Selaginella moellendorffii HOM05D022252 ORTHO05D006993 2.0e-06 58.9 201 24.9
HanXRQChr10g0286491 Helianthus annuus HOM05D005434 ORTHO05D006412 4.5e-06 57.8 233 26.2
Dinv12077 Davidia involucrata HOM05D005434 ORTHO05D006412 7.7e-06 57.0 69 46.4


User provided reference genes

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