Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.08G079300 Carya illinoinensis HOM05D000135 ORTHO05D000816 1.8e-52 209.9 110 100.0
CiPaw.05G177300 Carya illinoinensis HOM05D000135 ORTHO05D000816 7.8e-40 167.9 109 84.4
CiPaw.05G177200 Carya illinoinensis HOM05D000135 ORTHO05D000816 1.8e-28 130.2 91 79.1
CiPaw.05G177400 Carya illinoinensis HOM05D000135 ORTHO05D000816 1.2e-24 117.5 76 78.9
CiPaw.07G129800 Carya illinoinensis HOM05D000135 ORTHO05D000816 4.4e-19 99.0 113 57.5
Haze_22895 Corylus avellana HOM05D000135 ORTHO05D000816 1.3e-18 97.4 108 54.6
Cfa014171 Carpinus fangiana HOM05D000135 ORTHO05D000816 2.2e-18 96.7 110 54.5
CiPaw.06G007300 Carya illinoinensis HOM05D000135 ORTHO05D000816 1.2e-16 90.9 49 89.8
QL02p016421 Quercus lobata HOM05D000135 ORTHO05D000816 3.5e-16 89.4 95 53.7
RcHm_v2.0_Chr7g0217701 Rosa chinensis HOM05D000135 ORTHO05D000816 2.3e-15 86.7 98 55.1
FvH4_5g26790 Fragaria vesca HOM05D000135 ORTHO05D000816 3.9e-15 85.9 90 56.7
FAN18G1887 Fragaria x ananassa HOM05D000135 ORTHO05D000816 3.9e-15 85.9 98 54.1
QL02p016339 Quercus lobata HOM05D000135 ORTHO05D000816 3.9e-15 85.9 94 54.3
QL02p016392 Quercus lobata HOM05D000135 ORTHO05D000816 5.1e-15 85.5 81 58.0
FAN08G1719 Fragaria x ananassa HOM05D000135 ORTHO05D000816 5.6e-14 82.0 98 53.1
FAN13G2467 Fragaria x ananassa HOM05D000135 ORTHO05D000816 7.3e-14 81.6 98 53.1
CiPaw.06G007400 Carya illinoinensis HOM05D000135 ORTHO05D000816 2.1e-13 80.1 50 84.0
Duzib093G1260 Durio zibethinus HOM05D000135 ORTHO05D000816 4.8e-13 79.0 95 50.5
QL02p016429 Quercus lobata HOM05D000135 ORTHO05D000816 1.1e-12 77.8 85 58.8
Prupe.5G000600 Prunus persica HOM05D000135 ORTHO05D000816 5.3e-12 75.5 89 49.4
TAR381G0615 Trochodendron aralioides HOM05D000135 ORTHO05D000816 9.0e-12 74.7 90 52.2
Thecc.08G097200 Theobroma cacao HOM05D000135 ORTHO05D000816 2.0e-11 73.6 85 52.9
BcaC04g21998 Brassica carinata HOM05D000135 ORTHO05D000816 3.4e-11 72.8 85 51.8
C09p25010 Brassica napus HOM05D000135 ORTHO05D000816 3.4e-11 72.8 85 51.8
BolC9t55394H Brassica oleracea HOM05D000135 ORTHO05D000816 3.4e-11 72.8 85 51.8
Sabra05G0201600 Salix brachista HOM05D000135 ORTHO05D000816 4.5e-11 72.4 108 47.2
Potri.002G001400 Populus trichocarpa HOM05D000135 ORTHO05D000816 9.9e-11 71.2 108 42.6
BcaB07g31080 Brassica carinata HOM05D000135 ORTHO05D000816 2.9e-10 69.7 87 49.4
A09p19650 Brassica napus HOM05D000135 ORTHO05D000816 2.9e-10 69.7 85 50.6
BraA09t37576Z Brassica rapa HOM05D000135 ORTHO05D000816 2.9e-10 69.7 85 50.6
Lj2C97T3 Lonicera japonica HOM05D000135 ORTHO05D000816 4.9e-10 68.9 103 49.5
Lj2C97T4 Lonicera japonica HOM05D000135 ORTHO05D000816 6.4e-10 68.6 111 45.9
Potri.005G259900 Populus trichocarpa HOM05D000135 ORTHO05D000816 1.1e-09 67.8 115 42.6
AT5G42380 Arabidopsis thaliana HOM05D000135 ORTHO05D000816 1.9e-09 67.0 86 45.3
MBI01_g09380_MAGBIO Magnolia biondii HOM05D000135 ORTHO05D000816 1.9e-09 67.0 106 45.3
Thhalv10003430m.g Eutrema salsugineum HOM05D000135 ORTHO05D000816 3.2e-09 66.2 85 47.1
Solyc06g073830.1 Solanum lycopersicum HOM05D000135 ORTHO05D000816 3.2e-09 66.2 92 44.6
AL8G19120 Arabidopsis lyrata HOM05D000135 ORTHO05D000816 4.2e-09 65.9 86 46.5
CAN.G1463.22 Capsicum annuum HOM05D000135 ORTHO05D000816 5.4e-09 65.5 93 43.0
COL.COLO4_12261 Corchorus olitorius HOM05D000135 ORTHO05D000816 5.4e-09 65.5 95 46.3
FAN04G2622 Fragaria x ananassa HOM05D000135 ORTHO05D000816 5.4e-09 65.5 54 61.1
PGSC0003DMG400005909 Solanum tuberosum HOM05D000135 ORTHO05D000816 7.1e-09 65.1 92 46.7
PSO170G5225 Papaver somniferum HOM05D031213 ORTHO05D000816 1.2e-08 64.3 86 41.9
Carub.0008s0678 Capsella rubella HOM05D000135 ORTHO05D000816 1.6e-08 63.9 86 46.5
PSO170G5965 Papaver somniferum HOM05D031213 ORTHO05D000816 1.6e-08 63.9 106 40.6
Cpa.g.sc36.91 Carica papaya HOM05D000135 ORTHO05D000816 3.5e-08 62.8 87 48.3
Eucgr.F03632 Eucalyptus grandis HOM05D000135 ORTHO05D000816 3.5e-08 62.8 113 39.8
Nitab4.5_0002498g0070 Nicotiana tabacum HOM05D000135 ORTHO05D000816 3.5e-08 62.8 84 45.2
PGR031G1432 Punica granatum HOM05D000135 ORTHO05D000816 3.5e-08 62.8 113 38.1
GSVIVG01013467001 Vitis vinifera HOM05D000135 ORTHO05D000816 6.0e-08 62.0 84 46.4
PSO017G1231 Papaver somniferum HOM05D000135 ORTHO05D000816 7.9e-08 61.6 86 43.0
Sp7g08140 Schrenkiella parvula HOM05D000135 ORTHO05D000816 1.0e-07 61.2 85 45.9
PSO017G5575 Papaver somniferum HOM05D031213 ORTHO05D000816 2.3e-07 60.1 80 42.5
BcaNung05248 Brassica carinata HOM05D000135 ORTHO05D000816 3.0e-07 59.7 76 47.4
CANSAT25G2687 Cannabis sativa HOM05D000135 ORTHO05D000816 3.0e-07 59.7 44 63.6
CAN.G742.23 Capsicum annuum HOM05D000135 ORTHO05D000816 3.9e-07 59.3 88 39.8
Lj2C97T5 Lonicera japonica HOM05D000135 ORTHO05D000816 3.9e-07 59.3 104 40.4
Nitab4.5_0002183g0010 Nicotiana tabacum HOM05D000135 ORTHO05D000816 3.9e-07 59.3 65 49.2
Peaxi162Scf00098g00156 Petunia axillaris HOM05D000135 ORTHO05D000816 3.9e-07 59.3 84 41.7
THA.LOC104801644 Tarenaya hassleriana HOM05D000135 ORTHO05D000816 3.9e-07 59.3 87 43.7
Aqoxy5G00935 Aquilegia oxysepala HOM05D000135 ORTHO05D000816 5.1e-07 58.9 123 38.2
Nitab4.5_0007815g0080 Nicotiana tabacum HOM05D000135 ORTHO05D000816 5.1e-07 58.9 45 60.0
Peaxi162Scf00259g00126 Petunia axillaris HOM05D000135 ORTHO05D000816 5.1e-07 58.9 45 60.0
Solyc11g071740.2 Solanum lycopersicum HOM05D000135 ORTHO05D000816 5.1e-07 58.9 45 60.0
Sopen11g029410 Solanum pennellii HOM05D000135 ORTHO05D000816 5.1e-07 58.9 45 60.0
PGSC0003DMG400040538 Solanum tuberosum HOM05D000135 ORTHO05D000816 5.1e-07 58.9 45 60.0
Nitab4.5_0002498g0080 Nicotiana tabacum HOM05D000135 ORTHO05D000816 8.7e-07 58.2 97 40.2
PSO017G0388 Papaver somniferum HOM05D031213 ORTHO05D000816 8.7e-07 58.2 85 40.0
Sopen06g030230 Solanum pennellii HOM05D000135 ORTHO05D000816 8.7e-07 58.2 65 47.7
Manes.05G113200 Manihot esculenta HOM05D000135 ORTHO05D000816 1.1e-06 57.8 45 60.0
Nitab4.5_0000875g0030 Nicotiana tabacum HOM05D000135 ORTHO05D000816 1.1e-06 57.8 92 40.2
PGSC0003DMG400045603 Solanum tuberosum HOM05D000135 ORTHO05D000816 1.1e-06 57.8 45 57.8
CAN.G742.5 Capsicum annuum HOM05D000135 ORTHO05D000816 1.9e-06 57.0 60 48.3
TAR622G0710 Trochodendron aralioides HOM05D000135 ORTHO05D000816 1.9e-06 57.0 44 56.8
A07p28410 Brassica napus HOM05D000135 ORTHO05D000816 2.5e-06 56.6 89 39.3
BraA07t30478Z Brassica rapa HOM05D000135 ORTHO05D000816 2.5e-06 56.6 89 39.3
Lalb_Chr14g0363211 Lupinus albus HOM05D000135 ORTHO05D000816 2.5e-06 56.6 45 55.6
PGSC0003DMG400002993 Solanum tuberosum HOM05D000135 ORTHO05D000816 4.3e-06 55.8 59 49.2
Cpa.g.sc36.92 Carica papaya HOM05D000135 ORTHO05D000816 5.6e-06 55.5 83 48.2
Duzib264G0451 Durio zibethinus HOM05D000135 ORTHO05D000816 5.6e-06 55.5 42 61.9
Duzib264G0910 Durio zibethinus HOM05D000135 ORTHO05D000816 5.6e-06 55.5 42 61.9
Solyc11g071760.3 Solanum lycopersicum HOM05D000135 ORTHO05D000816 5.6e-06 55.5 59 49.2
AT1G76650 Arabidopsis thaliana HOM05D000135 ORTHO05D000816 7.4e-06 55.1 91 39.6
Thhalv10019204m.g Eutrema salsugineum HOM05D000135 ORTHO05D000816 7.4e-06 55.1 85 41.2
Oeu000733.1 Olea europaea HOM05D000135 ORTHO05D000816 7.4e-06 55.1 87 43.7
Sopen11g029420 Solanum pennellii HOM05D000135 ORTHO05D000816 7.4e-06 55.1 45 53.3
Sopen11g029430 Solanum pennellii HOM05D000135 ORTHO05D000816 7.4e-06 55.1 66 47.0
Atru.chr6.2532 Acer truncatum HOM05D000135 ORTHO05D000816 9.6e-06 54.7 43 55.8
EL10Ac2g03275 Beta vulgaris HOM05D000135 ORTHO05D000816 9.6e-06 54.7 45 62.2


User provided reference genes

Program Settings