Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.08G079200 Carya illinoinensis HOM05D005558 ORTHO05D006832 1.7e-102 375.9 181 100.0
Cfa014170 Carpinus fangiana HOM05D005558 ORTHO05D006832 1.3e-94 349.7 184 92.4
QL02p016334 Quercus lobata HOM05D005558 ORTHO05D006832 5.3e-88 327.8 189 84.7
CiPaw.07G129900 Carya illinoinensis HOM05D005558 ORTHO05D006832 2.6e-87 325.5 188 85.6
Nn6g31548 Nelumbo nucifera HOM05D005558 ORTHO05D006832 2.5e-82 308.9 182 80.2
Eucgr.F01955 Eucalyptus grandis HOM05D005558 ORTHO05D006832 2.4e-80 302.4 219 71.7
RcHm_v2.0_Chr7g0217691 Rosa chinensis HOM05D005558 ORTHO05D006832 9.1e-80 300.4 186 80.1
Prupe.5G000800 Prunus persica HOM05D005558 ORTHO05D006832 2.0e-79 299.3 185 80.5
PGR083G0867 Punica granatum HOM05D005558 ORTHO05D006832 1.0e-78 297.0 184 76.6
CSS0024776 Camellia sinensis var. sinensis HOM05D005558 ORTHO05D006832 1.3e-78 296.6 194 77.8
FAN04G1408 Fragaria x ananassa HOM05D005558 ORTHO05D006832 1.7e-78 296.2 182 78.0
COL.COLO4_12262 Corchorus olitorius HOM05D005558 ORTHO05D006832 3.8e-78 295.0 183 77.0
PSO170G6225 Papaver somniferum HOM05D005558 ORTHO05D006832 3.8e-78 295.0 183 78.1
FAN08G1374 Fragaria x ananassa HOM05D005558 ORTHO05D006832 1.1e-77 293.5 182 77.5
Hma1.2p1_0914F.1_g236230 Hydrangea macrophylla HOM05D005558 ORTHO05D006832 1.4e-77 293.1 194 75.3
PSO017G1036 Papaver somniferum HOM05D005558 ORTHO05D006832 1.9e-77 292.7 183 78.1
Sopen12g031670 Solanum pennellii HOM05D005558 ORTHO05D006832 1.9e-77 292.7 174 77.6
Solyc12g095770.2 Solanum lycopersicum HOM05D005558 ORTHO05D006832 4.2e-77 291.6 174 77.6
TWI12G1391 Tripterygium wilfordii HOM05D005558 ORTHO05D006832 4.2e-77 291.6 178 79.2
FvH4_5g26780 Fragaria vesca HOM05D005558 ORTHO05D006832 7.2e-77 290.8 184 76.6
FAN18G4437 Fragaria x ananassa HOM05D005558 ORTHO05D006832 7.2e-77 290.8 184 76.6
Glyma.15G161100 Glycine max HOM05D005558 ORTHO05D006832 1.2e-76 290.0 183 77.6
CANSAT25G0089 Cannabis sativa HOM05D005558 ORTHO05D006832 2.1e-76 289.3 182 76.4
Carub.0001s2052 Capsella rubella HOM05D005558 ORTHO05D006832 2.7e-76 288.9 183 77.0
Manes.18G000600 Manihot esculenta HOM05D005558 ORTHO05D006832 4.7e-76 288.1 188 76.6
arahy.Tifrunner.gnm1.ann1.GVHP98 Arachis hypogaea HOM05D005558 ORTHO05D006832 7.9e-76 287.3 185 77.8
CsaV3_4G037850 Cucumis sativus L. HOM05D005558 ORTHO05D006832 7.9e-76 287.3 184 73.9
Lsat_1_v5_gn_2_2740 Lactuca sativa HOM05D005558 ORTHO05D006832 7.9e-76 287.3 193 74.6
Nitab4.5_0003423g0040 Nicotiana tabacum HOM05D005558 ORTHO05D006832 7.9e-76 287.3 176 75.6
arahy.Tifrunner.gnm1.ann1.8D2970 Arachis hypogaea HOM05D005558 ORTHO05D006832 1.0e-75 287.0 183 77.0
Ah.08g212310 Amaranthus hybridus HOM05D005558 ORTHO05D006832 1.4e-75 286.6 179 76.0
BcaB03g12837 Brassica carinata HOM05D005558 ORTHO05D006832 2.3e-75 285.8 184 75.0
BraA06t24816Z Brassica rapa HOM05D005558 ORTHO05D006832 3.0e-75 285.4 181 74.6
CAN.G208.43 Capsicum annuum HOM05D005558 ORTHO05D006832 3.0e-75 285.4 175 75.4
ClCG11G019260 Citrullus lanatus HOM05D005558 ORTHO05D006832 3.0e-75 285.4 183 72.7
Potri.002G001500 Populus trichocarpa HOM05D005558 ORTHO05D006832 3.9e-75 285.0 149 86.6
BcaB07g32099 Brassica carinata HOM05D005558 ORTHO05D006832 5.1e-75 284.6 181 75.1
THA.LOC104813721 Tarenaya hassleriana HOM05D005558 ORTHO05D006832 6.7e-75 284.3 190 74.2
Gohir.A05G177400 Gossypium hirsutum HOM05D005558 ORTHO05D006832 8.8e-75 283.9 183 75.4
Thecc.08G097300 Theobroma cacao HOM05D005558 ORTHO05D006832 8.8e-75 283.9 183 75.4
Hund05339 Selenicereus undatus HOM05D005558 ORTHO05D006832 1.1e-74 283.5 184 74.5
GSVIVG01013466001 Vitis vinifera HOM05D005558 ORTHO05D006832 1.1e-74 283.5 144 88.9
EL10Ac7g17248 Beta vulgaris HOM05D005558 ORTHO05D006832 2.0e-74 282.7 182 72.5
A06p17130 Brassica napus HOM05D005558 ORTHO05D006832 2.0e-74 282.7 181 74.0
Ca_18758_v3 Cicer arietinum L. HOM05D005558 ORTHO05D006832 2.0e-74 282.7 182 75.8
Glyma.07G221200 Glycine max HOM05D005558 ORTHO05D006832 2.0e-74 282.7 181 74.6
MSTRG.24533 Avicennia marina HOM05D005558 ORTHO05D006832 2.6e-74 282.3 149 85.2
CARHR021510 Cardamine hirsuta HOM05D005558 ORTHO05D006832 2.6e-74 282.3 183 74.3
BcaC05g26014 Brassica carinata HOM05D005558 ORTHO05D006832 3.3e-74 282.0 181 73.5
Peaxi162Scf00064g01430 Petunia axillaris HOM05D005558 ORTHO05D006832 4.4e-74 281.6 173 76.3
Gorai.009G185800 Gossypium raimondii HOM05D005558 ORTHO05D006832 5.7e-74 281.2 183 74.9
Sc17g0004140 Simmondsia chinensis HOM05D005558 ORTHO05D006832 5.7e-74 281.2 186 74.7
AL1G34110 Arabidopsis lyrata HOM05D005558 ORTHO05D006832 7.4e-74 280.8 183 74.9
Cc10_g00070 Coffea canephora HOM05D005558 ORTHO05D006832 7.4e-74 280.8 147 85.7
Lj4g0004166 Lotus japonicus HOM05D005558 ORTHO05D006832 7.4e-74 280.8 181 75.7
Gohir.D05G180800 Gossypium hirsutum HOM05D005558 ORTHO05D006832 9.7e-74 280.4 183 74.3
MD06G1057400 Malus domestica HOM05D005558 ORTHO05D006832 1.3e-73 280.0 178 75.3
Psat7g129880 Pisum sativum HOM05D005558 ORTHO05D006832 1.7e-73 279.6 181 73.5
Sp1g18730 Schrenkiella parvula HOM05D005558 ORTHO05D006832 2.8e-73 278.9 182 74.2
PGSC0003DMG400029397 Solanum tuberosum HOM05D005558 ORTHO05D006832 2.8e-73 278.9 145 84.1
Thhalv10008709m.g Eutrema salsugineum HOM05D005558 ORTHO05D006832 3.7e-73 278.5 184 74.5
ATR0605G185 Amborella trichopoda HOM05D005558 ORTHO05D006832 4.8e-73 278.1 178 71.9
Rhsim06G0000500 Rhododendron simsii HOM05D005558 ORTHO05D006832 4.8e-73 278.1 233 63.1
TPR.G20977 Trifolium pratense HOM05D005558 ORTHO05D006832 4.8e-73 278.1 181 72.9
arahy.Tifrunner.gnm1.ann1.09GV4T Arachis hypogaea HOM05D005558 ORTHO05D006832 6.3e-73 277.7 181 73.5
arahy.Tifrunner.gnm1.ann1.H4MLSW Arachis hypogaea HOM05D005558 ORTHO05D006832 6.3e-73 277.7 181 73.5
Duzib116G0928 Durio zibethinus HOM05D005558 ORTHO05D006832 6.3e-73 277.7 184 74.5
Medtr4g084120 Medicago truncatula HOM05D005558 ORTHO05D006832 8.2e-73 277.3 181 73.5
MD07G1016000 Malus domestica HOM05D005558 ORTHO05D006832 1.1e-72 276.9 147 85.7
BcaC07g39074 Brassica carinata HOM05D005558 ORTHO05D006832 3.1e-72 275.4 169 78.7
AT1G21065 Arabidopsis thaliana HOM05D005558 ORTHO05D006832 7.0e-72 274.2 168 78.0
Aqoxy5G00965 Aquilegia oxysepala HOM05D005558 ORTHO05D006832 9.1e-72 273.9 161 78.3
BolC8t49687H Brassica oleracea HOM05D005558 ORTHO05D006832 9.1e-72 273.9 169 78.1
A08p29100 Brassica napus HOM05D005558 ORTHO05D006832 1.2e-71 273.5 169 78.1
BraA08t34846Z Brassica rapa HOM05D005558 ORTHO05D006832 1.2e-71 273.5 169 78.1
Lalb_Chr05g0219661 Lupinus albus HOM05D005558 ORTHO05D006832 1.5e-71 273.1 146 84.2
Phvul.002G097800 Phaseolus vulgaris HOM05D005558 ORTHO05D006832 2.6e-71 272.3 155 80.0
Migut.N03003 Erythranthe guttata HOM05D005558 ORTHO05D006832 7.7e-71 270.8 174 73.6
Lalb_Chr15g0083971 Lupinus albus HOM05D005558 ORTHO05D006832 1.0e-70 270.4 180 75.0
Os02g0187500 Oryza sativa ssp. japonica HOM05D005558 ORTHO05D006832 1.3e-70 270.0 144 84.0
TAR381G1539 Trochodendron aralioides HOM05D005558 ORTHO05D006832 3.2e-69 265.4 159 81.1
Zm00001eb387340 Zea mays HOM05D005558 ORTHO05D006832 5.5e-69 264.6 156 75.0
HPP92_021698 Vanilla planifolia HOM05D005558 ORTHO05D006832 2.7e-68 262.3 143 79.7
Zm00001eb234660 Zea mays HOM05D005558 ORTHO05D006832 6.1e-68 261.2 144 79.2
Atru.chr13.17 Acer truncatum HOM05D005558 ORTHO05D006832 1.8e-67 259.6 159 79.2
SGA_v2.0_scaffold19G08925 Striga asiatica HOM05D005558 ORTHO05D006832 5.2e-67 258.1 144 80.6
HPP92_017798 Vanilla planifolia HOM05D005558 ORTHO05D006832 2.6e-66 255.8 159 72.3
Mapoly0002s0034 Marchantia polymorpha HOM05D005558 ORTHO05D006832 5.3e-64 248.1 142 77.5
Ciclev10002303m.g Citrus clementina HOM05D005558 ORTHO05D006832 7.0e-64 247.7 177 70.6
SEGI_40156 Sequoiadendron giganteum HOM05D005558 ORTHO05D006832 1.2e-63 246.9 162 69.8
Pp3c1_31360 Physcomitrium patens HOM05D005558 ORTHO05D006832 2.6e-63 245.7 167 67.1
SMO259G0018 Selaginella moellendorffii HOM05D005558 ORTHO05D006832 1.3e-62 243.4 142 71.8
Actinidia15539 Actinidia chinensis HOM05D005558 ORTHO05D006832 2.9e-62 242.3 124 88.7
Sabra02G0001000 Salix brachista HOM05D005558 ORTHO05D006832 3.8e-62 241.9 172 68.0
HanXRQChr14g0427511 Helianthus annuus HOM05D005558 ORTHO05D006832 1.1e-61 240.4 139 81.3
Sed0017561 Sechium edule HOM05D005558 ORTHO05D006832 1.1e-61 240.4 162 73.5
Dinv05517 Davidia involucrata HOM05D005558 ORTHO05D006832 4.2e-61 238.4 150 78.0
AUR62041000 Chenopodium quinoa HOM05D005558 ORTHO05D006832 9.4e-61 237.3 170 67.6
Nitab4.5_0001309g0160 Nicotiana tabacum HOM05D005558 ORTHO05D006832 3.6e-60 235.3 127 81.9
Lj4C814G4 Lonicera japonica HOM05D005558 ORTHO05D006832 1.0e-59 233.8 166 69.9
C08p20580 Brassica napus HOM05D005558 ORTHO05D006832 2.3e-59 232.6 147 76.9
MELO3C017079.2 Cucumis melo HOM05D005558 ORTHO05D006832 1.2e-58 230.3 119 85.7
ECA238G0376 Erigeron canadensis HOM05D005558 ORTHO05D006832 3.3e-58 228.8 126 81.7
Haze_22894 Corylus avellana HOM05D005558 ORTHO05D006832 1.7e-57 226.5 184 65.2
BolC5t30678H Brassica oleracea HOM05D000370 ORTHO05D006832 2.4e-56 222.6 140 75.7
Cre17.g739300 Chlamydomonas reinhardtii HOM05D005558 ORTHO05D006832 1.7e-54 216.5 140 67.1
Phvul.009G240200 Phaseolus vulgaris HOM05D005558 ORTHO05D006832 8.5e-54 214.2 146 74.0
Prupe.5G000700 Prunus persica HOM05D005558 ORTHO05D006832 1.9e-53 213.0 120 82.5
SGA_v2.0_scaffold25G11031 Striga asiatica HOM05D005558 ORTHO05D006832 1.0e-51 207.2 153 66.7
VMungo0251G0776 Vigna mungo HOM05D005558 ORTHO05D006832 9.8e-50 200.7 126 77.0
Os06g0638200 Oryza sativa ssp. japonica HOM05D005558 ORTHO05D006832 2.0e-47 193.0 99 86.9
vmacro21735 Vaccinium macrocarpon HOM05D005558 ORTHO05D006832 1.2e-44 183.7 148 65.5
TAR376G0283 Trochodendron aralioides HOM05D005558 ORTHO05D006832 7.5e-42 174.5 91 89.0
Oeu000735.2 Olea europaea HOM05D005558 ORTHO05D006832 2.4e-40 169.5 91 84.6
SEGI_39286 Sequoiadendron giganteum HOM05D005558 ORTHO05D006832 3.1e-40 169.1 153 52.9
CDE04G3086 Ceratophyllum demersum HOM05D000433 ORTHO05D000443 5.4e-40 168.3 184 49.5
SMO203G0115 Selaginella moellendorffii HOM05D005558 ORTHO05D006832 1.2e-39 167.2 140 54.3
Pp3c2_25680 Physcomitrium patens HOM05D005558 ORTHO05D006832 7.8e-39 164.5 145 52.4
Mapoly0065s0101 Marchantia polymorpha HOM05D005558 ORTHO05D006832 1.0e-38 164.1 149 53.7
Peaxi162Scf00064g01422 Petunia axillaris HOM05D005558 ORTHO05D006832 1.9e-37 159.8 120 63.3
Cre01.g043100 Chlamydomonas reinhardtii HOM05D005558 ORTHO05D006832 4.7e-36 155.2 175 48.0
Cfa023908 Carpinus fangiana HOM05D005558 ORTHO05D006832 6.8e-35 151.4 169 44.4
SalBow6G6347 Salvia bowleyana HOM05D005558 ORTHO05D006832 1.7e-33 146.7 164 50.6
CBR_g570 Chara braunii HOM05D005558 ORTHO05D006832 1.7e-30 136.7 85 71.8
AL8G17720 Arabidopsis lyrata HOM05D005558 ORTHO05D006832 2.5e-29 132.9 72 87.5
AL5G16180 Arabidopsis lyrata HOM05D005558 ORTHO05D006832 2.3e-27 126.3 70 85.7
MCO09G054 Micromonas commoda HOM05D005558 ORTHO05D006832 1.5e-26 123.6 132 47.7
C05p19780 Brassica napus HOM05D005558 ORTHO05D006832 5.4e-24 115.2 59 83.1
HPP92_021704 Vanilla planifolia HOM05D005558 ORTHO05D006832 6.0e-23 111.7 120 46.7
Aa31LG7G5210 Aethionema arabicum HOM05D005558 ORTHO05D006832 4.3e-21 105.5 186 39.2
BcaC07g39073 Brassica carinata HOM05D005558 ORTHO05D006832 1.1e-19 100.9 53 83.0
Cpa.g.sc36.94 Carica papaya HOM05D005558 ORTHO05D006832 1.2e-15 87.4 120 46.7
AagrBONN_evm.TU.Sc2ySwM_344.2923 Anthoceros agrestis HOM05D005558 ORTHO05D006832 4.6e-15 85.5 77 55.8
Cre09.g396850 Chlamydomonas reinhardtii HOM05D005558 ORTHO05D034498 8.9e-11 71.2 176 29.5
Cpa.g.sc36.93 Carica papaya HOM05D005558 ORTHO05D006832 2.6e-10 69.7 31 90.3
DCAR_022964 Daucus carota HOM05D005558 ORTHO05D006832 4.4e-10 68.9 78 47.4
MCO09G751 Micromonas commoda HOM05D005558 ORTHO05D034498 2.4e-08 63.2 143 30.1
PRCOL_00001425 Prasinoderma coloniale HOM05D005558 ORTHO05D006832 2.7e-07 59.7 94 35.1
PRCOL_00001511 Prasinoderma coloniale HOM05D005558 ORTHO05D034498 1.3e-06 57.4 144 28.5
EL10Ac3g07438 Beta vulgaris HOM05D000371 ORTHO05D013217 1.7e-06 57.0 67 40.3


User provided reference genes

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