Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.08G075400 Carya illinoinensis HOM05D006240 ORTHO05D007709 3.1e-114 415.2 221 100.0
QL02p015120 Quercus lobata HOM05D006240 ORTHO05D007709 5.0e-72 275.0 220 73.6
Cfa014112 Carpinus fangiana HOM05D006240 ORTHO05D007709 2.7e-62 242.7 168 78.0
Haze_22830 Corylus avellana HOM05D006240 ORTHO05D007709 4.7e-62 241.9 194 72.2
TAR376G0245 Trochodendron aralioides HOM05D006240 ORTHO05D007709 4.7e-62 241.9 201 65.7
TAR628G0625 Trochodendron aralioides HOM05D006240 ORTHO05D007709 9.7e-60 234.2 220 63.2
Dinv31964 Davidia involucrata HOM05D006240 ORTHO05D007709 2.8e-59 232.6 226 62.8
GSVIVG01013393001 Vitis vinifera HOM05D006240 ORTHO05D007709 4.5e-57 225.3 230 60.0
Potri.005G253101 Populus trichocarpa HOM05D006240 ORTHO05D007709 2.2e-56 223.0 211 63.5
MBI05_g33294_MAGBIO Magnolia biondii HOM05D006240 ORTHO05D007709 8.5e-56 221.1 205 61.0
Sabra05G0196300 Salix brachista HOM05D006240 ORTHO05D007709 6.1e-54 214.9 211 61.1
Hma1.2p1_0612F.1_g188890 Hydrangea macrophylla HOM05D006240 ORTHO05D007709 8.0e-54 214.5 224 57.6
CSS0005151 Camellia sinensis var. sinensis HOM05D006240 ORTHO05D007709 1.4e-53 213.8 203 60.1
CANSAT56G3734 Cannabis sativa HOM05D006240 ORTHO05D007709 3.0e-53 212.6 223 56.5
Ciclev10002499m.g Citrus clementina HOM05D006240 ORTHO05D007709 5.2e-53 211.8 218 59.6
Actinidia15507 Actinidia chinensis HOM05D006240 ORTHO05D007709 2.2e-51 206.5 223 56.5
Actinidia17059 Actinidia chinensis HOM05D006240 ORTHO05D007709 3.7e-51 205.7 225 56.4
Manes.13G069200 Manihot esculenta HOM05D006240 ORTHO05D007709 4.8e-51 205.3 222 58.1
vmacro21788 Vaccinium macrocarpon HOM05D006240 ORTHO05D007709 1.8e-50 203.4 228 54.8
MSTRG.24503 Avicennia marina HOM05D006240 ORTHO05D007709 7.0e-50 201.4 200 58.5
Thecc.08G062400 Theobroma cacao HOM05D006240 ORTHO05D007709 1.6e-49 200.3 241 53.1
TWI36G0187 Tripterygium wilfordii HOM05D006240 ORTHO05D007709 4.5e-49 198.7 232 55.2
Rhsim06G0005200 Rhododendron simsii HOM05D006240 ORTHO05D007709 5.0e-48 195.3 222 52.7
COL.COLO4_07215 Corchorus olitorius HOM05D006240 ORTHO05D007709 1.1e-47 194.1 187 61.0
Gorai.002G114700 Gossypium raimondii HOM05D006240 ORTHO05D007709 1.5e-47 193.7 221 55.2
Gohir.D01G089000 Gossypium hirsutum HOM05D006240 ORTHO05D007709 5.5e-47 191.8 221 54.8
Duzib041G0618 Durio zibethinus HOM05D006240 ORTHO05D007709 9.5e-47 191.0 228 55.7
MELO3C017040.2 Cucumis melo HOM05D006240 ORTHO05D007709 2.7e-46 189.5 196 58.2
Peaxi162Scf00129g00239 Petunia axillaris HOM05D006240 ORTHO05D007709 2.7e-46 189.5 190 57.4
PGR031G1135 Punica granatum HOM05D006240 ORTHO05D007709 4.7e-46 188.7 209 53.6
Nitab4.5_0006318g0100 Nicotiana tabacum HOM05D006240 ORTHO05D007709 8.0e-46 188.0 209 54.5
CsaV3_4G037430 Cucumis sativus L. HOM05D006240 ORTHO05D007709 1.0e-45 187.6 196 58.2
Aqoxy5G00997 Aquilegia oxysepala HOM05D006240 ORTHO05D007709 1.8e-45 186.8 202 55.4
FAN03G2060 Fragaria x ananassa HOM05D006240 ORTHO05D007709 2.3e-45 186.4 198 57.1
Lj4C7G6 Lonicera japonica HOM05D006240 ORTHO05D007709 6.8e-45 184.9 242 51.7
THA.LOC104811476 Tarenaya hassleriana HOM05D006240 ORTHO05D007709 8.8e-45 184.5 201 53.7
PSO210G3458 Papaver somniferum HOM05D006240 ORTHO05D007709 4.4e-44 182.2 198 53.0
Nitab4.5_0000564g0070 Nicotiana tabacum HOM05D006240 ORTHO05D007709 5.7e-44 181.8 209 53.6
RcHm_v2.0_Chr7g0215611 Rosa chinensis HOM05D006240 ORTHO05D007709 5.7e-44 181.8 198 55.6
AL1G33760 Arabidopsis lyrata HOM05D006240 ORTHO05D007709 7.5e-44 181.4 222 52.7
FvH4_7g11300 Fragaria vesca HOM05D006240 ORTHO05D007709 9.8e-44 181.0 216 53.7
MD07G1117600 Malus domestica HOM05D006240 ORTHO05D007709 1.7e-43 180.3 191 58.1
EL10Ac4g09545 Beta vulgaris HOM05D006240 ORTHO05D007709 2.8e-43 179.5 190 55.8
Cc04_g09300 Coffea canephora HOM05D006240 ORTHO05D007709 3.7e-43 179.1 224 50.0
FAN10G2738 Fragaria x ananassa HOM05D006240 ORTHO05D007709 3.7e-43 179.1 216 53.2
RcHm_v2.0_Chr1g0349471 Rosa chinensis HOM05D006240 ORTHO05D007709 3.7e-43 179.1 198 55.6
FAN01G0923 Fragaria x ananassa HOM05D006240 ORTHO05D007709 4.9e-43 178.7 223 51.6
PGSC0003DMG400001324 Solanum tuberosum HOM05D006240 ORTHO05D007709 4.9e-43 178.7 211 51.2
Sed0018366 Sechium edule HOM05D006240 ORTHO05D007709 6.3e-43 178.3 225 50.7
BcaC06g34834 Brassica carinata HOM05D006240 ORTHO05D007709 1.1e-42 177.6 213 53.1
C07p22820 Brassica napus HOM05D006240 ORTHO05D007709 1.1e-42 177.6 213 53.1
AUR62035138 Chenopodium quinoa HOM05D006240 ORTHO05D007709 1.1e-42 177.6 199 52.8
Migut.M00585 Erythranthe guttata HOM05D006240 ORTHO05D007709 1.8e-42 176.8 189 53.4
Atru.chr9.2231 Acer truncatum HOM05D006240 ORTHO05D007709 2.4e-42 176.4 216 50.9
CAN.G206.149 Capsicum annuum HOM05D006240 ORTHO05D007709 2.4e-42 176.4 204 51.5
FAN06G3720 Fragaria x ananassa HOM05D006240 ORTHO05D007709 3.1e-42 176.0 211 53.6
Nn5g31000 Nelumbo nucifera HOM05D006240 ORTHO05D007709 4.1e-42 175.6 229 49.8
Sc15g0004230 Simmondsia chinensis HOM05D006240 ORTHO05D007709 5.4e-42 175.3 164 59.8
AT1G20770 Arabidopsis thaliana HOM05D006240 ORTHO05D007709 9.2e-42 174.5 220 49.5
unitig_578.g16237 Utricularia gibba HOM05D006240 ORTHO05D007709 9.2e-42 174.5 199 52.3
SGA_v2.0_scaffold54G19646 Striga asiatica HOM05D006240 ORTHO05D007709 1.2e-41 174.1 214 50.5
AUR62042908 Chenopodium quinoa HOM05D006240 ORTHO05D007709 2.0e-41 173.3 199 52.3
CARHR021210 Cardamine hirsuta HOM05D006240 ORTHO05D007709 2.7e-41 172.9 215 51.2
Sopen02g032680 Solanum pennellii HOM05D006240 ORTHO05D007709 2.7e-41 172.9 202 48.5
DCAR_020858 Daucus carota HOM05D001217 ORTHO05D007709 3.5e-41 172.6 222 46.8
BolC7t42820H Brassica oleracea HOM05D006240 ORTHO05D007709 4.5e-41 172.2 222 50.5
BraA08t34862Z Brassica rapa HOM05D006240 ORTHO05D007709 5.9e-41 171.8 212 51.4
Migut.M00223 Erythranthe guttata HOM05D006240 ORTHO05D007709 7.7e-41 171.4 188 50.0
Migut.N02969 Erythranthe guttata HOM05D006240 ORTHO05D007709 1.3e-40 170.6 193 51.3
Carub.0001s2022 Capsella rubella HOM05D006240 ORTHO05D007709 1.7e-40 170.2 217 49.3
BcaB03g12855 Brassica carinata HOM05D006240 ORTHO05D007709 2.3e-40 169.9 223 50.7
SalBow6G2548 Salvia bowleyana HOM05D006240 ORTHO05D007709 2.3e-40 169.9 208 48.1
Thhalv10008759m.g Eutrema salsugineum HOM05D006240 ORTHO05D007709 2.9e-40 169.5 220 50.9
C08p20350 Brassica napus HOM05D006240 ORTHO05D007709 3.8e-40 169.1 209 52.6
ClCG11G018840 Citrullus lanatus HOM05D006240 ORTHO05D007709 3.8e-40 169.1 270 44.1
BcaB03g14301 Brassica carinata HOM05D006240 ORTHO05D007709 5.0e-40 168.7 216 50.5
BraA07t29290Z Brassica rapa HOM05D006240 ORTHO05D007709 5.0e-40 168.7 222 51.8
MD02G1098700 Malus domestica HOM05D006240 ORTHO05D007709 5.0e-40 168.7 191 55.0
Gohir.A01G103700 Gossypium hirsutum HOM05D006240 ORTHO05D007709 6.6e-40 168.3 175 57.1
A07p15490 Brassica napus HOM05D006240 ORTHO05D007709 8.6e-40 167.9 220 51.8
Medtr3g115650 Medicago truncatula HOM05D006240 ORTHO05D007709 8.6e-40 167.9 233 47.2
Nn4g24539 Nelumbo nucifera HOM05D006240 ORTHO05D007709 8.6e-40 167.9 220 50.5
Aa31LG7G4930 Aethionema arabicum HOM05D006240 ORTHO05D007709 1.1e-39 167.5 206 51.0
BcaC07g39051 Brassica carinata HOM05D006240 ORTHO05D007709 1.1e-39 167.5 207 52.2
A08p29270 Brassica napus HOM05D006240 ORTHO05D007709 1.1e-39 167.5 204 52.5
Sp1g18470 Schrenkiella parvula HOM05D006240 ORTHO05D007709 4.3e-39 165.6 219 49.8
HPP92_012646 Vanilla planifolia HOM05D006240 ORTHO05D007709 5.6e-39 165.2 210 47.6
BolC8t49663H Brassica oleracea HOM05D006240 ORTHO05D007709 7.3e-39 164.9 215 50.2
Ah.00g001020 Amaranthus hybridus HOM05D006240 ORTHO05D007709 1.2e-38 164.1 193 48.7
Psat5g009800 Pisum sativum HOM05D006240 ORTHO05D007709 1.2e-38 164.1 208 49.0
Eucgr.K03289 Eucalyptus grandis HOM05D006240 ORTHO05D007709 4.7e-38 162.2 261 43.7
TPR.G38126 Trifolium pratense HOM05D006240 ORTHO05D007709 6.1e-38 161.8 205 47.3
Glyma.19G151500 Glycine max HOM05D006240 ORTHO05D007709 1.0e-37 161.0 221 46.6
Prupe.2G140800 Prunus persica HOM05D006240 ORTHO05D007709 1.0e-37 161.0 191 51.8
PSO170G2591 Papaver somniferum HOM05D006240 ORTHO05D007709 1.4e-37 160.6 194 51.0
Lalb_Chr11g0061501 Lupinus albus HOM05D006240 ORTHO05D007709 4.0e-37 159.1 208 47.1
CDE04G0018 Ceratophyllum demersum HOM05D006240 ORTHO05D007709 5.2e-37 158.7 195 45.6
Lj1g0026125 Lotus japonicus HOM05D006240 ORTHO05D007709 1.2e-36 157.5 217 46.1
ECA232G5059 Erigeron canadensis HOM05D006240 ORTHO05D007709 4.4e-36 155.6 228 44.7
HanXRQChr16g0516421 Helianthus annuus HOM05D006240 ORTHO05D007709 5.7e-36 155.2 227 47.6
Ca_15403_v3 Cicer arietinum L. HOM05D006240 ORTHO05D007709 1.3e-35 154.1 208 44.7
Ca_29886_v3 Cicer arietinum L. HOM05D006240 ORTHO05D007709 1.3e-35 154.1 208 44.7
Glyma.03G148200 Glycine max HOM05D006240 ORTHO05D007709 1.3e-35 154.1 212 45.8
Lsat_1_v5_gn_2_1920 Lactuca sativa HOM05D006240 ORTHO05D007709 1.3e-35 154.1 204 48.5
VMungo1383G1920 Vigna mungo HOM05D006240 ORTHO05D007709 3.7e-35 152.5 221 46.6
Hund05091 Selenicereus undatus HOM05D006240 ORTHO05D007709 4.9e-35 152.1 223 47.1
Phvul.001G146200 Phaseolus vulgaris HOM05D006240 ORTHO05D007709 4.6e-33 145.6 212 44.3
Os04g0509200 Oryza sativa ssp. japonica HOM05D006240 ORTHO05D007709 1.3e-32 144.1 229 43.2
arahy.Tifrunner.gnm1.ann1.MR2FC0 Arachis hypogaea HOM05D006240 ORTHO05D007709 1.1e-31 141.0 224 45.5
arahy.Tifrunner.gnm1.ann1.W2HKS7 Arachis hypogaea HOM05D006240 ORTHO05D007709 4.7e-22 109.0 186 40.3
Atru.chr3.2559 Acer truncatum HOM05D006240 ORTHO05D007709 1.4e-21 107.5 223 38.1
SGA_v2.0_scaffold54G19644 Striga asiatica HOM05D006240 ORTHO05D007709 2.3e-21 106.7 278 33.5
Solyc02g087940.4 Solanum lycopersicum HOM05D006240 ORTHO05D007709 4.4e-20 102.4 130 46.2
Zm00001eb077760 Zea mays HOM05D006240 ORTHO05D007709 4.9e-19 99.0 137 44.5
Phvul.009G075200 Phaseolus vulgaris HOM05D006240 ORTHO05D007709 6.4e-19 98.6 131 48.1
Atru.chr9.2243 Acer truncatum HOM05D006240 ORTHO05D007709 8.3e-19 98.2 77 67.5
FAN10G3076 Fragaria x ananassa HOM05D006240 ORTHO05D007709 1.6e-17 94.0 115 49.6
ATR0807G014 Amborella trichopoda HOM05D006240 ORTHO05D007709 8.6e-16 88.2 96 50.0
Pp3c17_23460 Physcomitrium patens HOM05D006240 ORTHO05D007709 4.7e-14 82.4 209 30.6
SEGI_13318 Sequoiadendron giganteum HOM05D006240 ORTHO05D007709 1.7e-11 73.9 58 67.2
Atru.chr9.2228 Acer truncatum HOM05D000343 ORTHO05D000975 9.2e-10 68.2 47 70.2
SEGI_19917 Sequoiadendron giganteum HOM05D006240 ORTHO05D007709 6.0e-09 65.5 143 35.7
SGA_v2.0_scaffold54G19641 Striga asiatica HOM05D005561 ORTHO05D006834 2.3e-08 63.5 86 44.2
Mapoly0189s0009 Marchantia polymorpha HOM05D006240 ORTHO05D007709 1.9e-07 60.5 226 28.8


User provided reference genes

Program Settings