Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.08G073000 Carya illinoinensis HOM05D005125 ORTHO05D006777 4.0e-276 954.1 475 100.0
CiPaw.07G138900 Carya illinoinensis HOM05D005125 ORTHO05D006777 1.1e-217 760.0 441 85.9
Cfa014076 Carpinus fangiana HOM05D005125 ORTHO05D006777 8.7e-207 723.8 443 81.9
Prupe.1G354500 Prunus persica HOM05D005125 ORTHO05D006777 6.3e-197 691.0 438 77.2
QL02p014036 Quercus lobata HOM05D005125 ORTHO05D006777 5.3e-196 688.0 430 78.8
Haze_22773 Corylus avellana HOM05D005125 ORTHO05D006777 1.3e-194 683.3 391 85.4
MD15G1002000 Malus domestica HOM05D005125 ORTHO05D006777 1.7e-194 682.9 438 76.5
MD08G1002400 Malus domestica HOM05D005125 ORTHO05D006777 2.2e-194 682.6 438 76.9
RcHm_v2.0_Chr6g0304271 Rosa chinensis HOM05D005125 ORTHO05D006777 3.0e-191 672.2 437 76.2
Duzib093G0577 Durio zibethinus HOM05D005125 ORTHO05D006777 2.5e-190 669.1 453 74.4
FAN27G2626 Fragaria x ananassa HOM05D005125 ORTHO05D006777 4.3e-190 668.3 435 74.7
Cpa.g.sc26.198 Carica papaya HOM05D005125 ORTHO05D006777 2.2e-189 666.0 449 72.4
FvH4_2g37450 Fragaria vesca HOM05D005125 ORTHO05D006777 6.3e-189 664.5 435 74.5
GSVIVG01013360001 Vitis vinifera HOM05D005125 ORTHO05D006777 5.3e-188 661.4 438 74.4
FAN20G1306 Fragaria x ananassa HOM05D005125 ORTHO05D006777 6.9e-188 661.0 435 74.5
Manes.05G134400 Manihot esculenta HOM05D005125 ORTHO05D006777 1.2e-187 660.2 416 77.4
Potri.005G250300 Populus trichocarpa HOM05D005125 ORTHO05D006777 5.9e-187 657.9 415 76.4
Manes.18G005400 Manihot esculenta HOM05D005125 ORTHO05D006777 1.3e-186 656.8 438 74.7
FAN15G0126 Fragaria x ananassa HOM05D005125 ORTHO05D006777 2.5e-185 652.5 449 72.2
Dinv31939 Davidia involucrata HOM05D005125 ORTHO05D006777 4.2e-185 651.7 446 72.9
Lalb_Chr11g0061631 Lupinus albus HOM05D005125 ORTHO05D006777 5.5e-185 651.4 439 74.5
Sabra05G0193900 Salix brachista HOM05D005125 ORTHO05D006777 5.5e-185 651.4 429 73.9
Ca_15433_v3 Cicer arietinum L. HOM05D005125 ORTHO05D006777 1.2e-184 650.2 438 74.0
Potri.002G010800 Populus trichocarpa HOM05D005125 ORTHO05D006777 1.6e-184 649.8 435 73.3
TWI56G0714 Tripterygium wilfordii HOM05D005125 ORTHO05D006777 2.7e-184 649.0 407 77.9
THA.LOC104813172 Tarenaya hassleriana HOM05D005125 ORTHO05D006777 3.6e-184 648.7 428 74.3
Duzib116G0840 Durio zibethinus HOM05D005125 ORTHO05D006777 2.3e-183 646.0 434 74.0
Thecc.08G058900 Theobroma cacao HOM05D005125 ORTHO05D006777 2.3e-183 646.0 441 73.7
Ciclev10003241m.g Citrus clementina HOM05D005125 ORTHO05D006777 6.7e-183 644.4 405 77.3
Medtr3g115290 Medicago truncatula HOM05D005125 ORTHO05D006777 1.1e-182 643.7 435 74.7
ClCG08G009440 Citrullus lanatus HOM05D005125 ORTHO05D006777 2.6e-182 642.5 442 74.0
CANSAT25G1708 Cannabis sativa HOM05D005125 ORTHO05D006777 4.4e-182 641.7 444 73.0
CSS0022218 Camellia sinensis var. sinensis HOM05D005125 ORTHO05D006777 7.4e-182 641.0 436 72.7
Glyma.06G018200 Glycine max HOM05D005125 ORTHO05D006777 9.7e-182 640.6 431 73.8
Gohir.A01G105600 Gossypium hirsutum HOM05D005125 ORTHO05D006777 1.3e-181 640.2 432 72.9
Glyma.04G017900 Glycine max HOM05D005125 ORTHO05D006777 1.7e-181 639.8 431 74.2
Gorai.002G117000 Gossypium raimondii HOM05D005125 ORTHO05D006777 2.2e-181 639.4 433 73.2
Eucgr.L00923 Eucalyptus grandis HOM05D005125 ORTHO05D006777 3.7e-181 638.6 435 72.4
Gohir.D01G091900 Gossypium hirsutum HOM05D005125 ORTHO05D006777 6.3e-181 637.9 433 73.0
Aa31LG9G12440 Aethionema arabicum HOM05D005125 ORTHO05D006777 1.4e-180 636.7 437 71.6
Hma1.2p1_0507F.1_g168460 Hydrangea macrophylla HOM05D005125 ORTHO05D006777 1.8e-180 636.3 427 73.3
TPR.G38202 Trifolium pratense HOM05D005125 ORTHO05D006777 9.1e-180 634.0 440 72.5
BcaC04g22006 Brassica carinata HOM05D005125 ORTHO05D006777 3.4e-179 632.1 427 73.3
C09p24930 Brassica napus HOM05D005125 ORTHO05D006777 3.4e-179 632.1 427 73.3
MD12G1003300 Malus domestica HOM05D005125 ORTHO05D006777 4.5e-179 631.7 485 67.8
BcaB07g31085 Brassica carinata HOM05D005125 ORTHO05D006777 5.9e-179 631.3 433 72.1
A09p19570 Brassica napus HOM05D005125 ORTHO05D006777 7.7e-179 630.9 427 73.1
Actinidia37922 Actinidia chinensis HOM05D005125 ORTHO05D006777 1.0e-178 630.6 431 71.9
BraA09t37570Z Brassica rapa HOM05D005125 ORTHO05D006777 1.3e-178 630.2 427 73.1
Lalb_Chr23g0265791 Lupinus albus HOM05D005125 ORTHO05D006777 1.3e-178 630.2 439 72.2
Lj1g0005535 Lotus japonicus HOM05D005125 ORTHO05D006777 2.2e-178 629.4 438 72.1
TAR625G0173 Trochodendron aralioides HOM05D005125 ORTHO05D006777 2.9e-178 629.0 434 71.7
AL8G19280 Arabidopsis lyrata HOM05D005125 ORTHO05D006777 1.4e-177 626.7 421 72.7
EL10Ac1g01960 Beta vulgaris HOM05D005125 ORTHO05D006777 1.2e-176 623.6 430 70.7
Sp7g08250 Schrenkiella parvula HOM05D005125 ORTHO05D006777 1.6e-176 623.2 420 72.4
Phvul.009G010800 Phaseolus vulgaris HOM05D005125 ORTHO05D006777 2.1e-176 622.9 438 72.1
AT5G42320 Arabidopsis thaliana HOM05D005125 ORTHO05D006777 4.7e-176 621.7 424 71.5
Rhsim06G0007400 Rhododendron simsii HOM05D005125 ORTHO05D006777 4.7e-176 621.7 434 71.0
CARHR284930 Cardamine hirsuta HOM05D005125 ORTHO05D006777 1.8e-175 619.8 424 71.0
PGR083G1107 Punica granatum HOM05D005125 ORTHO05D006777 2.3e-175 619.4 400 75.5
CsaV3_6G031580 Cucumis sativus L. HOM05D005125 ORTHO05D006777 3.9e-175 618.6 436 72.0
Solyc04g082340.3 Solanum lycopersicum HOM05D005125 ORTHO05D006777 5.2e-175 618.2 442 69.0
Sopen04g035960 Solanum pennellii HOM05D005125 ORTHO05D006777 5.2e-175 618.2 444 68.7
Atru.chr13.135 Acer truncatum HOM05D005125 ORTHO05D006777 1.1e-174 617.1 407 74.0
Carub.0008s0686 Capsella rubella HOM05D005125 ORTHO05D006777 1.5e-174 616.7 419 71.8
Cc10_g00670 Coffea canephora HOM05D005125 ORTHO05D006777 1.3e-173 613.6 451 68.1
arahy.Tifrunner.gnm1.ann1.1X7ZBM Arachis hypogaea HOM05D005125 ORTHO05D006777 6.3e-173 611.3 437 71.9
PSO675G8084 Papaver somniferum HOM05D005125 ORTHO05D006777 6.3e-173 611.3 412 73.5
PSO541G3228 Papaver somniferum HOM05D005125 ORTHO05D006777 1.4e-172 610.1 412 73.5
Migut.C00961 Erythranthe guttata HOM05D005125 ORTHO05D006777 1.8e-172 609.8 444 66.7
arahy.Tifrunner.gnm1.ann1.VXG7Z6 Arachis hypogaea HOM05D005125 ORTHO05D006777 3.1e-172 609.0 449 70.6
Aqoxy6G01728 Aquilegia oxysepala HOM05D005125 ORTHO05D006777 1.2e-171 607.1 427 70.0
Ah.00g000800 Amaranthus hybridus HOM05D005125 ORTHO05D006777 2.0e-171 606.3 442 68.6
Duzib041G0467 Durio zibethinus HOM05D005125 ORTHO05D006777 1.3e-170 603.6 464 67.0
Nitab4.5_0000588g0110 Nicotiana tabacum HOM05D005125 ORTHO05D006777 1.7e-170 603.2 410 71.7
PGSC0003DMG400009979 Solanum tuberosum HOM05D005125 ORTHO05D006777 2.2e-170 602.8 439 67.7
Peaxi162Scf00893g00037 Petunia axillaris HOM05D005125 ORTHO05D006777 1.5e-169 600.1 413 70.2
EL10Ac7g16836 Beta vulgaris HOM05D005125 ORTHO05D006777 9.4e-169 597.4 427 69.8
AUR62036871 Chenopodium quinoa HOM05D005125 ORTHO05D006777 9.4e-169 597.4 385 74.5
Lj4A11T69 Lonicera japonica HOM05D005125 ORTHO05D006777 8.0e-168 594.3 402 71.9
Sed0024407 Sechium edule HOM05D005125 ORTHO05D006777 8.0e-168 594.3 409 73.3
vmacro21811 Vaccinium macrocarpon HOM05D005125 ORTHO05D006777 6.7e-167 591.3 479 63.5
SalBow7G1095 Salvia bowleyana HOM05D005125 ORTHO05D006777 1.5e-166 590.1 423 67.4
Actinidia28601 Actinidia chinensis HOM05D005125 ORTHO05D006777 9.7e-166 587.4 421 68.4
Rhsim07G0254900 Rhododendron simsii HOM05D005125 ORTHO05D006777 2.2e-165 586.3 390 72.3
HanXRQChr06g0183991 Helianthus annuus HOM05D005125 ORTHO05D006777 8.2e-165 584.3 427 66.7
CAN.G311.115 Capsicum annuum HOM05D005125 ORTHO05D006777 9.1e-164 580.9 397 71.0
Lsat_1_v5_gn_2_5181 Lactuca sativa HOM05D005125 ORTHO05D006777 5.9e-163 578.2 387 71.1
SGA_v2.0_scaffold108G30863 Striga asiatica HOM05D005125 ORTHO05D006777 1.9e-161 573.2 440 64.8
ECA238G0848 Erigeron canadensis HOM05D005125 ORTHO05D006777 1.6e-160 570.1 374 72.5
Hund05112 Selenicereus undatus HOM05D005125 ORTHO05D006777 2.6e-158 562.8 385 71.7
vmacro04403 Vaccinium macrocarpon HOM05D005125 ORTHO05D006777 3.4e-158 562.4 424 66.5
Nn5g30942 Nelumbo nucifera HOM05D005125 ORTHO05D006777 8.3e-157 557.8 400 69.8
Ca_15458_v3 Cicer arietinum L. HOM05D005125 ORTHO05D006777 2.4e-156 556.2 346 77.2
VMungo1309G1587 Vigna mungo HOM05D005125 ORTHO05D006777 3.1e-156 555.8 392 71.2
Lsat_1_v5_gn_8_26201 Lactuca sativa HOM05D005125 ORTHO05D006777 9.5e-153 544.3 394 66.5
Eucgr.E03516 Eucalyptus grandis HOM05D005125 ORTHO05D006777 3.6e-152 542.3 432 64.6
Thhalv10027780m.g Eutrema salsugineum HOM05D005125 ORTHO05D006777 8.3e-149 531.2 336 76.2
MBI08_g41521_MAGBIO Magnolia biondii HOM05D005125 ORTHO05D006777 1.1e-145 520.8 402 64.2
unitig_747.g21516 Utricularia gibba HOM05D005125 ORTHO05D006777 3.6e-144 515.8 405 59.8
MELO3C026539.2 Cucumis melo HOM05D005125 ORTHO05D006777 3.0e-143 512.7 359 71.6
HPP92_007117 Vanilla planifolia HOM05D005125 ORTHO05D006777 7.5e-142 508.1 421 61.3
Zm00001eb209310 Zea mays HOM05D005125 ORTHO05D006777 1.1e-140 504.2 391 62.9
Os02g0119300 Oryza sativa ssp. japonica HOM05D005125 ORTHO05D006777 4.1e-140 502.3 392 61.7
ATR0661G305 Amborella trichopoda HOM05D005125 ORTHO05D006777 3.9e-138 495.7 416 59.1
DCAR_016769 Daucus carota HOM05D005125 ORTHO05D006777 1.5e-137 493.8 398 60.3
CSS0019336 Camellia sinensis var. sinensis HOM05D005125 ORTHO05D006777 1.9e-137 493.4 303 76.6
CDE05G1644 Ceratophyllum demersum HOM05D005125 ORTHO05D006777 5.2e-135 485.3 416 60.3
Sc15g0004430 Simmondsia chinensis HOM05D005125 ORTHO05D006777 3.5e-131 472.6 340 68.8
Gorai.009G188100 Gossypium raimondii HOM05D005125 ORTHO05D006777 4.3e-129 465.7 323 67.5
SHI07997 Sapria himalayana HOM05D005125 ORTHO05D006777 9.5e-129 464.5 427 56.7
Gohir.D05G182800 Gossypium hirsutum HOM05D005125 ORTHO05D006777 1.1e-127 461.1 323 66.6
COL.COLO4_06662 Corchorus olitorius HOM05D005125 ORTHO05D006777 2.2e-125 453.4 284 77.5
Gohir.A05G179600 Gossypium hirsutum HOM05D005125 ORTHO05D006777 1.1e-124 451.1 323 65.6
Dinv05534 Davidia involucrata HOM05D005125 ORTHO05D006777 1.9e-116 423.7 290 73.8
Psat5g159120 Pisum sativum HOM05D005125 ORTHO05D006777 4.3e-113 412.5 285 74.4
Mapoly0045s0063 Marchantia polymorpha HOM05D005125 ORTHO05D006777 5.6e-105 385.6 353 54.4
AagrBONN_evm.TU.Sc2ySwM_362.2863 Anthoceros agrestis HOM05D005125 ORTHO05D006777 8.1e-104 381.7 398 50.3
Pp3c20_16570 Physcomitrium patens HOM05D005125 ORTHO05D006777 3.4e-94 349.7 406 45.6
SMO358G0159 Selaginella moellendorffii HOM05D005125 ORTHO05D006777 2.9e-93 346.7 277 59.9
ECA238G3411 Erigeron canadensis HOM05D005125 ORTHO05D006777 4.6e-91 339.3 199 76.9
BcaNung05255 Brassica carinata HOM05D005125 ORTHO05D006777 4.9e-85 319.3 234 70.1
SGA_v2.0_scaffold195G40773 Striga asiatica HOM05D005125 ORTHO05D006777 5.1e-74 282.7 192 69.3
Cre11.g467631 Chlamydomonas reinhardtii HOM05D005125 ORTHO05D006777 6.7e-74 282.3 317 44.5
MD00G1076900 Malus domestica HOM05D005125 ORTHO05D006777 1.3e-72 278.1 230 62.6
PRCOL_00006814 Prasinoderma coloniale HOM05D005125 ORTHO05D006777 1.1e-68 265.0 235 54.5
SEGI_03459 Sequoiadendron giganteum HOM05D005125 ORTHO05D006777 5.1e-66 256.1 236 55.1
BcaNung05254 Brassica carinata HOM05D005125 ORTHO05D006777 3.3e-65 253.4 174 69.5
Oeu056206.2 Olea europaea HOM05D005125 ORTHO05D006777 1.8e-55 221.1 145 73.1
BolC9t55384H Brassica oleracea HOM05D005125 ORTHO05D006777 2.0e-54 217.6 170 68.8
ECA233G3085 Erigeron canadensis HOM05D000006 ORTHO05D000001 2.7e-43 180.6 120 65.8
SEGI_37631 Sequoiadendron giganteum HOM05D005125 ORTHO05D006777 1.8e-39 167.9 114 61.4
SGA_v2.0_scaffold83G26467 Striga asiatica HOM05D005125 ORTHO05D006777 1.5e-36 158.3 130 63.8
MCO16G405 Micromonas commoda HOM05D005125 ORTHO05D006777 3.0e-34 150.6 127 52.8
Cc00_g07920 Coffea canephora HOM05D005125 ORTHO05D006777 1.7e-32 144.8 157 56.7
Sc15g0004440 Simmondsia chinensis HOM05D005125 ORTHO05D006777 3.7e-32 143.7 123 58.5
ECA238G2450 Erigeron canadensis HOM05D000240 ORTHO05D002721 2.3e-29 134.4 75 76.0
Cre16.g668950 Chlamydomonas reinhardtii HOM05D005125 ORTHO05D034490 2.1e-27 127.9 292 31.2
PRCOL_00005708 Prasinoderma coloniale HOM05D005125 ORTHO05D034490 9.2e-23 112.5 388 25.5
Oeu035185.1 Olea europaea HOM05D005125 ORTHO05D006777 2.0e-22 111.3 95 58.9
Lsat_1_v5_gn_1_87521 Lactuca sativa HOM05D005125 ORTHO05D007904 6.2e-19 99.8 63 66.7
Cc10_g14360 Coffea canephora HOM05D005125 ORTHO05D006777 2.9e-16 90.9 58 72.4
TPR.G33884 Trifolium pratense HOM05D005125 ORTHO05D006777 1.4e-15 88.6 52 75.0
ECA233G5321 Erigeron canadensis HOM05D000003 ORTHO05D000004 2.3e-10 71.2 54 63.0
C04p25390 Brassica napus HOM05D005125 ORTHO05D041222 2.9e-08 64.3 91 41.8
BolC4t24047H Brassica oleracea HOM05D005125 ORTHO05D041222 2.9e-08 64.3 91 41.8


User provided reference genes

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