Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.08G069100 Carya illinoinensis HOM05D006402 ORTHO05D008099 2.0e-83 312.4 156 100.0
Haze_22699 Corylus avellana HOM05D006402 ORTHO05D008099 8.4e-66 253.8 156 81.4
Cfa014004 Carpinus fangiana HOM05D006402 ORTHO05D008099 9.3e-65 250.4 156 80.8
Prupe.1G359800 Prunus persica HOM05D006402 ORTHO05D008099 1.6e-61 239.6 153 76.5
MD08G1008000 Malus domestica HOM05D006402 ORTHO05D008099 1.1e-57 226.9 153 77.1
Duzib093G1673 Durio zibethinus HOM05D006402 ORTHO05D008099 2.1e-56 222.6 144 77.1
Aa31LG4G6170 Aethionema arabicum HOM05D006402 ORTHO05D008099 1.8e-55 219.5 153 73.2
FAN27G3062 Fragaria x ananassa HOM05D006402 ORTHO05D008099 1.8e-55 219.5 150 74.0
QL02p012927 Quercus lobata HOM05D006402 ORTHO05D008099 5.1e-55 218.0 158 72.8
FvH4_2g37980 Fragaria vesca HOM05D006402 ORTHO05D008099 6.7e-55 217.6 150 73.3
Manes.05G142900 Manihot esculenta HOM05D006402 ORTHO05D008099 6.7e-55 217.6 157 72.6
COL.COLO4_26087 Corchorus olitorius HOM05D006402 ORTHO05D008099 8.7e-55 217.2 144 77.8
RcHm_v2.0_Chr6g0303641 Rosa chinensis HOM05D006402 ORTHO05D008099 8.7e-55 217.2 157 72.6
FAN20G3208 Fragaria x ananassa HOM05D006402 ORTHO05D008099 2.5e-54 215.7 150 74.0
AL2G36080 Arabidopsis lyrata HOM05D006402 ORTHO05D008099 7.4e-54 214.2 153 73.9
Cc10_g01150 Coffea canephora HOM05D006402 ORTHO05D008099 1.6e-53 213.0 128 82.8
PGR142G1353 Punica granatum HOM05D006402 ORTHO05D008099 2.1e-53 212.6 125 84.8
arahy.Tifrunner.gnm1.ann1.KWDT0T Arachis hypogaea HOM05D006402 ORTHO05D008099 2.8e-53 212.2 152 69.7
Sabra02G0013300 Salix brachista HOM05D006402 ORTHO05D008099 2.8e-53 212.2 156 70.5
TWI14G1330 Tripterygium wilfordii HOM05D006402 ORTHO05D008099 2.8e-53 212.2 156 69.2
TAR628G1405 Trochodendron aralioides HOM05D006402 ORTHO05D008099 4.8e-53 211.5 156 67.9
Potri.002G016600 Populus trichocarpa HOM05D006402 ORTHO05D008099 8.1e-53 210.7 157 68.2
Thecc.08G051300 Theobroma cacao HOM05D006402 ORTHO05D008099 8.1e-53 210.7 144 75.0
MELO3C011341.2 Cucumis melo HOM05D006402 ORTHO05D008099 1.1e-52 210.3 128 79.7
Ciclev10002722m.g Citrus clementina HOM05D006402 ORTHO05D008099 1.8e-52 209.5 152 71.7
Cpa.g.sc81.101 Carica papaya HOM05D006402 ORTHO05D008099 2.4e-52 209.1 154 66.9
Nn6g34597 Nelumbo nucifera HOM05D006402 ORTHO05D008099 2.4e-52 209.1 145 72.4
arahy.Tifrunner.gnm1.ann1.R93WT9 Arachis hypogaea HOM05D006402 ORTHO05D008099 3.1e-52 208.8 152 68.4
Nitab4.5_0003030g0100 Nicotiana tabacum HOM05D006402 ORTHO05D008099 3.1e-52 208.8 123 82.9
Sed0012705 Sechium edule HOM05D006402 ORTHO05D008099 4.0e-52 208.4 139 74.1
Gohir.A06G001000 Gossypium hirsutum HOM05D006402 ORTHO05D008099 5.3e-52 208.0 139 73.4
Sp5g31180 Schrenkiella parvula HOM05D006402 ORTHO05D008099 5.3e-52 208.0 155 70.3
BcaC08g47098 Brassica carinata HOM05D006402 ORTHO05D008099 6.9e-52 207.6 153 71.2
THA.LOC104811442 Tarenaya hassleriana HOM05D006402 ORTHO05D008099 6.9e-52 207.6 155 68.4
Hma1.2p1_0023F.1_g015780 Hydrangea macrophylla HOM05D006402 ORTHO05D008099 9.0e-52 207.2 131 78.6
Lj4C17T8 Lonicera japonica HOM05D006402 ORTHO05D008099 1.5e-51 206.5 127 78.7
A07p41620 Brassica napus HOM05D006402 ORTHO05D008099 2.0e-51 206.1 154 69.5
BraA07t31691Z Brassica rapa HOM05D006402 ORTHO05D008099 2.0e-51 206.1 154 69.5
CARHR069600 Cardamine hirsuta HOM05D006402 ORTHO05D008099 2.6e-51 205.7 153 68.6
Atru.chr13.220 Acer truncatum HOM05D006402 ORTHO05D008099 3.4e-51 205.3 141 73.8
CANSAT25G3089 Cannabis sativa HOM05D006402 ORTHO05D008099 3.4e-51 205.3 158 69.6
Thhalv10019271m.g Eutrema salsugineum HOM05D006402 ORTHO05D008099 4.5e-51 204.9 151 70.9
AT1G76060 Arabidopsis thaliana HOM05D006402 ORTHO05D008099 5.8e-51 204.5 156 70.5
Sc02g0008870 Simmondsia chinensis HOM05D006402 ORTHO05D008099 5.8e-51 204.5 128 81.2
Aqoxy6G00455 Aquilegia oxysepala HOM05D006402 ORTHO05D008099 1.3e-50 203.4 136 72.1
Rhsim07G0248600 Rhododendron simsii HOM05D006402 ORTHO05D008099 1.7e-50 203.0 130 76.9
BolC6t40039H Brassica oleracea HOM05D006402 ORTHO05D008099 2.2e-50 202.6 154 68.8
Carub.0002s2294 Capsella rubella HOM05D006402 ORTHO05D008099 2.9e-50 202.2 153 70.6
A02p20400 Brassica napus HOM05D006402 ORTHO05D008099 4.9e-50 201.4 149 70.5
AUR62016156 Chenopodium quinoa HOM05D006402 ORTHO05D008099 4.9e-50 201.4 149 69.8
Gorai.006G031900 Gossypium raimondii HOM05D006402 ORTHO05D008099 4.9e-50 201.4 139 74.8
Gorai.010G001200 Gossypium raimondii HOM05D006402 ORTHO05D008099 4.9e-50 201.4 133 75.2
SalBow7G2419 Salvia bowleyana HOM05D006402 ORTHO05D008099 4.9e-50 201.4 137 75.9
C06p50000 Brassica napus HOM05D006402 ORTHO05D008099 6.4e-50 201.1 154 68.2
Dinv18455 Davidia involucrata HOM05D006402 ORTHO05D008099 6.4e-50 201.1 130 78.5
Peaxi162Scf00174g00075 Petunia axillaris HOM05D006402 ORTHO05D008099 6.4e-50 201.1 124 79.0
SalBow6G2408 Salvia bowleyana HOM05D006402 ORTHO05D008099 8.4e-50 200.7 130 78.5
Sed0017306 Sechium edule HOM05D006402 ORTHO05D008099 1.1e-49 200.3 128 75.8
MSTRG.1145 Avicennia marina HOM05D006402 ORTHO05D008099 1.9e-49 199.5 135 76.3
AUR62036301 Chenopodium quinoa HOM05D006402 ORTHO05D008099 1.9e-49 199.5 127 78.0
HanXRQChr14g0429471 Helianthus annuus HOM05D006402 ORTHO05D008099 2.4e-49 199.1 130 75.4
SGA_v2.0_scaffold292G47394 Striga asiatica HOM05D006402 ORTHO05D008099 2.4e-49 199.1 125 80.0
ClCG08G014030 Citrullus lanatus HOM05D006402 ORTHO05D008099 4.2e-49 198.4 133 74.4
Sc02g0008830 Simmondsia chinensis HOM05D006402 ORTHO05D008099 4.2e-49 198.4 128 78.9
Sopen04g035580 Solanum pennellii HOM05D006402 ORTHO05D008099 4.2e-49 198.4 127 76.4
PGSC0003DMG400009954 Solanum tuberosum HOM05D006402 ORTHO05D008099 4.2e-49 198.4 127 76.4
Gohir.A09G028000 Gossypium hirsutum HOM05D006402 ORTHO05D008099 5.5e-49 198.0 139 71.9
Migut.C00897 Erythranthe guttata HOM05D006402 ORTHO05D008099 7.1e-49 197.6 130 78.5
PGSC0003DMG400012651 Solanum tuberosum HOM05D006402 ORTHO05D008099 7.1e-49 197.6 127 74.8
CAN.G311.71 Capsicum annuum HOM05D006402 ORTHO05D008099 1.2e-48 196.8 127 74.8
ECA238G1428 Erigeron canadensis HOM05D006402 ORTHO05D008099 1.6e-48 196.4 131 76.3
Solyc04g081940.3 Solanum lycopersicum HOM05D006402 ORTHO05D008099 1.6e-48 196.4 127 75.6
DCAR_007723 Daucus carota HOM05D006402 ORTHO05D008099 2.1e-48 196.1 129 72.9
EL10Ac1g02084 Beta vulgaris HOM05D006402 ORTHO05D008099 4.6e-48 194.9 127 74.8
unitig_32.g11245 Utricularia gibba HOM05D006402 ORTHO05D008099 4.6e-48 194.9 125 78.4
Solyc02g085937.1 Solanum lycopersicum HOM05D006402 ORTHO05D008099 1.0e-47 193.7 126 73.8
Sopen02g030620 Solanum pennellii HOM05D006402 ORTHO05D008099 1.3e-47 193.4 126 73.8
Lalb_Chr23g0266011 Lupinus albus HOM05D006402 ORTHO05D008099 3.0e-47 192.2 147 63.9
CSS0047659 Camellia sinensis var. sinensis HOM05D006402 ORTHO05D008099 3.9e-47 191.8 142 69.7
CsaV3_2G024420 Cucumis sativus L. HOM05D006402 ORTHO05D008099 1.6e-45 186.4 128 72.7
VMungo0647G0728 Vigna mungo HOM05D006402 ORTHO05D008099 2.1e-45 186.0 147 63.3
CDE05G2406 Ceratophyllum demersum HOM05D000228 ORTHO05D001122 6.2e-45 184.5 118 77.1
MBI03_g11314_MAGBIO Magnolia biondii HOM05D006402 ORTHO05D008099 1.1e-44 183.7 156 62.8
Lj5g0026723 Lotus japonicus HOM05D006402 ORTHO05D008099 3.1e-44 182.2 128 73.4
Ca_13483_v3 Cicer arietinum L. HOM05D006402 ORTHO05D008099 4.0e-44 181.8 137 67.2
Phvul.001G003000 Phaseolus vulgaris HOM05D006402 ORTHO05D008099 1.0e-42 177.2 144 61.8
Actinidia29765 Actinidia chinensis HOM05D006402 ORTHO05D008099 2.9e-42 175.6 131 68.7
Eucgr.F01698 Eucalyptus grandis HOM05D006402 ORTHO05D008099 6.5e-42 174.5 127 71.7
Gohir.D09G027401 Gossypium hirsutum HOM05D006402 ORTHO05D008099 8.4e-42 174.1 139 65.5
PSO675G2459 Papaver somniferum HOM05D006402 ORTHO05D008099 1.4e-41 173.3 124 69.4
Psat6g001160 Pisum sativum HOM05D006402 ORTHO05D008099 3.2e-41 172.2 131 67.2
HPP92_013449 Vanilla planifolia HOM05D006402 ORTHO05D008099 3.2e-41 172.2 124 69.4
Glyma.17G261100 Glycine max HOM05D006402 ORTHO05D008099 5.5e-41 171.4 118 71.2
TPR.G26406 Trifolium pratense HOM05D006402 ORTHO05D008099 1.2e-40 170.2 138 63.0
Lsat_1_v5_gn_2_6761 Lactuca sativa HOM05D006402 ORTHO05D008099 2.7e-40 169.1 131 67.9
ATR0580G246 Amborella trichopoda HOM05D006402 ORTHO05D008099 3.5e-40 168.7 126 68.3
SHI08020 Sapria himalayana HOM05D006402 ORTHO05D008099 4.6e-40 168.3 123 69.9
Glyma.09G042800 Glycine max HOM05D006402 ORTHO05D008099 6.0e-40 167.9 142 60.6
PSO541G5119 Papaver somniferum HOM05D006402 ORTHO05D008099 1.0e-39 167.2 123 68.3
BcaC03g15641 Brassica carinata HOM05D006402 ORTHO05D008099 1.8e-39 166.4 152 61.2
Os03g0136600 Oryza sativa ssp. japonica HOM05D006402 ORTHO05D008099 5.1e-39 164.9 134 64.9
Medtr1g026078 Medicago truncatula HOM05D006402 ORTHO05D008099 3.3e-38 162.2 128 64.8
ATR0680G026 Amborella trichopoda HOM05D006402 ORTHO05D008099 4.3e-38 161.8 126 65.9
SEGI_22650 Sequoiadendron giganteum HOM05D006402 ORTHO05D008099 2.2e-37 159.5 132 60.6
Zm00001eb002920 Zea mays HOM05D006402 ORTHO05D008099 8.2e-37 157.5 129 65.1
BolC2t09355H Brassica oleracea HOM05D006402 ORTHO05D008099 4.2e-33 145.2 152 53.3
C02p33500 Brassica napus HOM05D006402 ORTHO05D008099 5.5e-33 144.8 152 53.3
Pp3c14_25160 Physcomitrium patens HOM05D006402 ORTHO05D008099 1.7e-29 133.3 124 53.2
BcaC08g47099 Brassica carinata HOM05D006402 ORTHO05D008099 2.2e-29 132.9 103 68.9
BraA02t07072Z Brassica rapa HOM05D006402 ORTHO05D008099 4.8e-29 131.7 90 73.3
SMO358G0213 Selaginella moellendorffii HOM05D006402 ORTHO05D008099 6.3e-29 131.3 125 52.8
QL08p014343 Quercus lobata HOM05D006402 ORTHO05D008099 3.8e-26 122.1 144 50.0
AagrBONN_evm.TU.Sc2ySwM_228.4698 Anthoceros agrestis HOM05D006402 ORTHO05D008099 2.7e-24 115.9 118 53.4
CBR_g51533 Chara braunii HOM05D006402 ORTHO05D008099 3.6e-24 115.5 118 51.7
Mapoly0186s0006 Marchantia polymorpha HOM05D006402 ORTHO05D008099 2.3e-23 112.8 124 48.4
PRCOL_00001167 Prasinoderma coloniale HOM05D006402 ORTHO05D008099 9.7e-22 107.5 104 53.8
MD15G1006900 Malus domestica HOM05D006402 ORTHO05D008099 1.1e-20 104.0 91 62.6
Eucgr.F01697 Eucalyptus grandis HOM05D006402 ORTHO05D008099 1.4e-20 103.6 106 54.7
BcaC08g47297 Brassica carinata HOM05D006402 ORTHO05D008099 5.9e-19 98.2 158 39.2
Cre01.g028150 Chlamydomonas reinhardtii HOM05D006402 ORTHO05D008099 5.5e-17 91.7 110 42.7
MCO02G370 Micromonas commoda HOM05D006402 ORTHO05D008099 2.1e-16 89.7 81 49.4
Sed0026898 Sechium edule HOM05D006402 ORTHO05D008099 2.6e-14 82.8 119 43.7
Glyma.14G222200 Glycine max HOM05D006402 ORTHO05D008099 9.1e-12 74.3 57 71.9
BcaB05g24967 Brassica carinata HOM05D000901 ORTHO05D001160 5.0e-10 68.6 90 51.1
BcaC08g47102 Brassica carinata HOM05D006402 ORTHO05D008099 2.3e-07 59.7 60 51.7


User provided reference genes

Program Settings