Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.08G067400 Carya illinoinensis HOM05D007731 ORTHO05D008483 1.2e-105 386.7 234 100.0
CiPaw.07G147300 Carya illinoinensis HOM05D007731 ORTHO05D008483 2.2e-70 269.6 245 67.3
Cfa013976 Carpinus fangiana HOM05D007731 ORTHO05D008483 7.9e-60 234.6 241 71.8
Haze_22661 Corylus avellana HOM05D007731 ORTHO05D008483 7.9e-60 234.6 244 70.1
QL02p012129 Quercus lobata HOM05D007731 ORTHO05D008483 1.0e-59 234.2 243 63.0
Manes.05G145300 Manihot esculenta HOM05D007731 ORTHO05D008483 1.8e-43 180.3 247 47.8
Prupe.1G363100 Prunus persica HOM05D007731 ORTHO05D008483 1.1e-40 171.0 269 46.8
Thecc.08G047100 Theobroma cacao HOM05D007731 ORTHO05D008483 4.1e-40 169.1 254 49.2
Duzib093G0569 Durio zibethinus HOM05D007731 ORTHO05D008483 9.1e-40 167.9 250 44.8
TAR376G0482 Trochodendron aralioides HOM05D007731 ORTHO05D008483 4.5e-39 165.6 227 48.5
CSS0005102 Camellia sinensis var. sinensis HOM05D007731 ORTHO05D008483 3.8e-38 162.5 239 49.0
Ciclev10002425m.g Citrus clementina HOM05D007731 ORTHO05D008483 1.1e-37 161.0 217 52.1
RcHm_v2.0_Chr6g0303181 Rosa chinensis HOM05D007731 ORTHO05D008483 2.5e-37 159.8 237 45.1
Manes.18G011966 Manihot esculenta HOM05D007731 ORTHO05D008483 4.2e-37 159.1 258 46.1
Potri.005G241800 Populus trichocarpa HOM05D007731 ORTHO05D008483 4.2e-37 159.1 266 44.4
CSS0046256 Camellia sinensis var. sinensis HOM05D007731 ORTHO05D008483 4.7e-36 155.6 240 48.3
TAR628G0423 Trochodendron aralioides HOM05D007731 ORTHO05D008483 4.7e-36 155.6 239 43.9
Nn6g32002 Nelumbo nucifera HOM05D007731 ORTHO05D008483 3.9e-35 152.5 164 56.1
CANSAT25G3722 Cannabis sativa HOM05D007731 ORTHO05D008483 1.1e-34 151.0 221 52.0
COL.COLO4_26124 Corchorus olitorius HOM05D007731 ORTHO05D008483 1.5e-34 150.6 166 54.8
Hma1.2p1_0733F.1_g210180 Hydrangea macrophylla HOM05D007731 ORTHO05D008483 2.6e-34 149.8 231 47.2
Dinv39536 Davidia involucrata HOM05D007731 ORTHO05D008483 3.3e-34 149.4 154 57.8
Potri.002G019700 Populus trichocarpa HOM05D007731 ORTHO05D008483 3.3e-34 149.4 263 42.2
FvH4_2g38210 Fragaria vesca HOM05D007731 ORTHO05D008483 1.3e-33 147.5 237 50.2
Gohir.A05G185300 Gossypium hirsutum HOM05D007731 ORTHO05D008483 2.8e-33 146.4 247 43.3
FAN27G0472 Fragaria x ananassa HOM05D007731 ORTHO05D008483 3.7e-33 146.0 237 48.9
FAN20G0947 Fragaria x ananassa HOM05D007731 ORTHO05D008483 6.3e-33 145.2 238 49.2
Gohir.D05G188100 Gossypium hirsutum HOM05D007731 ORTHO05D008483 8.2e-33 144.8 164 56.1
CSS0037397 Camellia sinensis var. sinensis HOM05D007731 ORTHO05D008483 1.1e-32 144.4 227 46.3
Nn5g30769 Nelumbo nucifera HOM05D007731 ORTHO05D008483 1.4e-32 144.1 145 60.7
Sabra02G0016000 Salix brachista HOM05D007731 ORTHO05D008483 1.8e-32 143.7 263 42.6
Gorai.009G193400 Gossypium raimondii HOM05D007731 ORTHO05D008483 3.1e-32 142.9 166 55.4
FAN15G0282 Fragaria x ananassa HOM05D007731 ORTHO05D008483 7.0e-32 141.7 237 48.5
Sabra05G0187200 Salix brachista HOM05D007731 ORTHO05D008483 2.0e-31 140.2 179 52.0
Cpa.g.sc26.305 Carica papaya HOM05D007731 ORTHO05D008483 3.5e-31 139.4 219 42.5
Gohir.A01G110400 Gossypium hirsutum HOM05D007731 ORTHO05D008483 1.5e-29 134.0 240 43.3
Lj4P799T27 Lonicera japonica HOM05D007731 ORTHO05D008483 7.2e-29 131.7 275 40.7
Gohir.D01G097000 Gossypium hirsutum HOM05D007731 ORTHO05D008483 1.8e-27 127.1 230 41.3
CSS0031900 Camellia sinensis var. sinensis HOM05D007731 ORTHO05D008483 2.3e-27 126.7 226 44.7
Gorai.002G122700 Gossypium raimondii HOM05D007731 ORTHO05D008483 2.3e-27 126.7 230 41.3
TWI12G0892 Tripterygium wilfordii HOM05D007731 ORTHO05D008483 4.0e-27 125.9 226 42.9
ClCG08G014190 Citrullus lanatus HOM05D007731 ORTHO05D008483 2.2e-25 120.2 167 51.5
Actinidia16998 Actinidia chinensis HOM05D007731 ORTHO05D008483 1.8e-24 117.1 222 42.3
Sed0013309 Sechium edule HOM05D007731 ORTHO05D008483 3.1e-24 116.3 209 43.1
TWI56G0526 Tripterygium wilfordii HOM05D007731 ORTHO05D008483 4.1e-24 115.9 155 48.4
MSTRG.25262 Avicennia marina HOM05D007731 ORTHO05D008483 7.0e-24 115.2 176 44.3
PGR031G1853 Punica granatum HOM05D007731 ORTHO05D008483 1.6e-23 114.0 247 37.2
Cc00_g29330 Coffea canephora HOM05D007731 ORTHO05D008483 2.7e-23 113.2 183 41.0
Actinidia15437 Actinidia chinensis HOM05D007731 ORTHO05D008483 7.7e-23 111.7 214 42.1
CsaV3_2G024250 Cucumis sativus L. HOM05D007731 ORTHO05D008483 1.0e-22 111.3 205 42.0
Eucgr.H00961 Eucalyptus grandis HOM05D007731 ORTHO05D008483 8.5e-22 108.2 177 45.8
Aqoxy6G02285 Aquilegia oxysepala HOM05D007731 ORTHO05D008483 2.5e-21 106.7 254 44.5
PSO541G3821 Papaver somniferum HOM05D007731 ORTHO05D008483 1.6e-20 104.0 109 53.2
Lalb_Chr23g0266081 Lupinus albus HOM05D007731 ORTHO05D008483 2.3e-19 100.1 157 45.2
ECA233G0921 Erigeron canadensis HOM05D007731 ORTHO05D008483 4.0e-19 99.4 126 46.8
Lj1g0026139 Lotus japonicus HOM05D007731 ORTHO05D008483 4.0e-19 99.4 163 46.0
TPR.G34549 Trifolium pratense HOM05D007731 ORTHO05D008483 5.2e-19 99.0 240 36.7
Gohir.A02G083100 Gossypium hirsutum HOM05D007731 ORTHO05D008483 1.2e-18 97.8 168 44.6
Gohir.D02G098500 Gossypium hirsutum HOM05D007731 ORTHO05D008483 1.2e-18 97.8 168 44.6
Gorai.005G112400 Gossypium raimondii HOM05D007731 ORTHO05D008483 1.2e-18 97.8 168 44.6
Lsat_1_v5_gn_8_30081 Lactuca sativa HOM05D007731 ORTHO05D008483 4.4e-18 95.9 153 49.0
Glyma.04G023500 Glycine max HOM05D007731 ORTHO05D008483 5.7e-18 95.5 121 51.2
VMungo1309G0548 Vigna mungo HOM05D007731 ORTHO05D008483 1.3e-17 94.4 125 48.8
Phvul.009G009600 Phaseolus vulgaris HOM05D007731 ORTHO05D008483 1.7e-17 94.0 134 46.3
Rhsim06G0016400 Rhododendron simsii HOM05D007731 ORTHO05D008483 2.8e-17 93.2 225 38.7
Rhsim06G0019700 Rhododendron simsii HOM05D007731 ORTHO05D008483 1.8e-16 90.5 138 44.9
Ca_15482_v3 Cicer arietinum L. HOM05D007731 ORTHO05D008483 2.4e-16 90.1 120 51.7
arahy.Tifrunner.gnm1.ann1.3IU0NQ Arachis hypogaea HOM05D007731 ORTHO05D008483 1.6e-15 87.4 107 50.5
Psat0s2878g0040 Pisum sativum HOM05D007731 ORTHO05D008483 1.6e-15 87.4 163 42.9
Dinv31866 Davidia involucrata HOM05D000068 ORTHO05D000084 4.5e-15 85.9 186 40.3
arahy.Tifrunner.gnm1.ann1.WY2XWP Arachis hypogaea HOM05D007731 ORTHO05D008483 5.9e-15 85.5 105 50.5
PGSC0003DMG400009876 Solanum tuberosum HOM05D007731 ORTHO05D008483 1.0e-14 84.7 265 34.3
Sc15g0004830 Simmondsia chinensis HOM05D007731 ORTHO05D008483 1.3e-14 84.3 162 43.8
Medtr3g113660 Medicago truncatula HOM05D007731 ORTHO05D008483 5.0e-14 82.4 242 33.1
Sopen04g035340 Solanum pennellii HOM05D007731 ORTHO05D008483 2.5e-13 80.1 119 45.4
Glyma.06G023400 Glycine max HOM05D007731 ORTHO05D008483 4.2e-13 79.3 88 55.7
ClCG05G015580 Citrullus lanatus HOM05D007731 ORTHO05D008483 1.6e-12 77.4 61 70.5
DCAR_013881 Daucus carota HOM05D007731 ORTHO05D008483 1.6e-12 77.4 155 40.0
CsaV3_3G045970 Cucumis sativus L. HOM05D007731 ORTHO05D008483 1.4e-11 74.3 153 37.3
Migut.C00858 Erythranthe guttata HOM05D007731 ORTHO05D008483 3.0e-11 73.2 82 54.9
MELO3C003742.2 Cucumis melo HOM05D007731 ORTHO05D008483 2.0e-10 70.5 150 37.3
MBI18_g10965_MAGBIO Magnolia biondii HOM05D001921 ORTHO05D001784 5.7e-10 68.9 121 39.7
AUR62041477 Chenopodium quinoa HOM05D007731 ORTHO05D008483 7.5e-10 68.6 100 46.0
Carub.0001s1960 Capsella rubella HOM05D009961 ORTHO05D008483 1.3e-09 67.8 45 64.4
Cpa.g.sc16.79 Carica papaya HOM05D001921 ORTHO05D001784 2.2e-09 67.0 102 37.3
BcaB07g32022 Brassica carinata HOM05D009961 ORTHO05D008483 3.7e-09 66.2 45 64.4
QL06p006408 Quercus lobata HOM05D001921 ORTHO05D001784 3.7e-09 66.2 93 39.8
BraA06t24726Z Brassica rapa HOM05D009961 ORTHO05D008483 6.3e-09 65.5 45 64.4
VMungo0540G1436 Vigna mungo HOM05D001921 ORTHO05D001784 6.3e-09 65.5 89 39.3
BcaC05g25901 Brassica carinata HOM05D009961 ORTHO05D008483 8.3e-09 65.1 45 64.4
A06p16220 Brassica napus HOM05D009961 ORTHO05D008483 8.3e-09 65.1 45 64.4
C05p18560 Brassica napus HOM05D009961 ORTHO05D008483 8.3e-09 65.1 45 64.4
BolC5t30567H Brassica oleracea HOM05D009961 ORTHO05D008483 8.3e-09 65.1 45 64.4
Gohir.A10G105100 Gossypium hirsutum HOM05D001921 ORTHO05D001784 8.3e-09 65.1 87 42.5
Gohir.D10G163601 Gossypium hirsutum HOM05D001921 ORTHO05D001784 8.3e-09 65.1 87 42.5
Gorai.011G182400 Gossypium raimondii HOM05D001921 ORTHO05D001784 1.1e-08 64.7 87 42.5
Lalb_Chr19g0131461 Lupinus albus HOM05D007731 ORTHO05D008483 1.1e-08 64.7 46 65.2
THA.LOC104811421 Tarenaya hassleriana HOM05D009961 ORTHO05D008483 1.1e-08 64.7 43 69.8
AT1G20070 Arabidopsis thaliana HOM05D009961 ORTHO05D008483 1.4e-08 64.3 45 62.2
SGA_v2.0_scaffold92G28205 Striga asiatica HOM05D007731 ORTHO05D008483 1.4e-08 64.3 231 34.2
Potri.008G198000 Populus trichocarpa HOM05D001921 ORTHO05D001784 1.8e-08 63.9 87 41.4
ATR0712G013 Amborella trichopoda HOM05D007731 ORTHO05D008483 2.4e-08 63.5 124 36.3
BcaB03g14337 Brassica carinata HOM05D009961 ORTHO05D008483 3.1e-08 63.2 45 60.0
Sabra08G0162400 Salix brachista HOM05D001921 ORTHO05D001784 4.1e-08 62.8 87 43.7
TAR362G1200 Trochodendron aralioides HOM05D001921 ORTHO05D001784 4.1e-08 62.8 162 35.2
TAR365G0872 Trochodendron aralioides HOM05D001921 ORTHO05D001784 5.4e-08 62.4 155 32.3
A07p16020 Brassica napus HOM05D009961 ORTHO05D008483 7.0e-08 62.0 45 60.0
BraA07t29330Z Brassica rapa HOM05D009961 ORTHO05D008483 7.0e-08 62.0 45 60.0
Hma1.2p1_0511F.1_g169240 Hydrangea macrophylla HOM05D001921 ORTHO05D001784 9.2e-08 61.6 94 39.4
BolC7t42871H Brassica oleracea HOM05D009961 ORTHO05D008483 1.2e-07 61.2 45 57.8
Thecc.04G273300 Theobroma cacao HOM05D001921 ORTHO05D001784 1.2e-07 61.2 117 30.8
Duzib151G0850 Durio zibethinus HOM05D001921 ORTHO05D001784 1.6e-07 60.8 93 40.9
Manes.15G019800 Manihot esculenta HOM05D001921 ORTHO05D001784 1.6e-07 60.8 128 31.2
AL1G32880 Arabidopsis lyrata HOM05D009961 ORTHO05D008483 2.0e-07 60.5 45 57.8
Medtr2g020830 Medicago truncatula HOM05D001921 ORTHO05D001784 3.5e-07 59.7 89 37.1
ClCG06G005610 Citrullus lanatus HOM05D001921 ORTHO05D001784 4.5e-07 59.3 146 30.8
Potri.010G027500 Populus trichocarpa HOM05D001921 ORTHO05D001784 4.5e-07 59.3 86 39.5
unitig_749.g13899 Utricularia gibba HOM05D007731 ORTHO05D008483 5.9e-07 58.9 75 44.0
Nitab4.5_0009186g0010 Nicotiana tabacum HOM05D001921 ORTHO05D001784 7.8e-07 58.5 132 32.6
arahy.Tifrunner.gnm1.ann1.288BMH Arachis hypogaea HOM05D001921 ORTHO05D001784 1.0e-06 58.2 88 36.4
arahy.Tifrunner.gnm1.ann1.XA6I97 Arachis hypogaea HOM05D001921 ORTHO05D001784 1.0e-06 58.2 88 36.4
DCAR_023282 Daucus carota HOM05D001921 ORTHO05D001784 1.0e-06 58.2 160 31.9
Duzib212G0985 Durio zibethinus HOM05D001921 ORTHO05D001784 1.3e-06 57.8 123 31.7
Ah.11g039950 Amaranthus hybridus HOM05D047386 ORTHO05D008483 1.7e-06 57.4 88 45.5
Prupe.1G145900 Prunus persica HOM05D001921 ORTHO05D001784 1.7e-06 57.4 87 37.9
Aa31LG7G4510 Aethionema arabicum HOM05D009961 ORTHO05D008483 2.3e-06 57.0 46 56.5
ATR0580G129 Amborella trichopoda HOM05D001921 ORTHO05D001784 2.9e-06 56.6 86 38.4
Cfa015526 Carpinus fangiana HOM05D001921 ORTHO05D001784 2.9e-06 56.6 157 29.3
CsaV3_6G005540 Cucumis sativus L. HOM05D001921 ORTHO05D001784 2.9e-06 56.6 146 29.5
Lj6g0003156 Lotus japonicus HOM05D001921 ORTHO05D001784 2.9e-06 56.6 89 33.7
Lj6g0019677 Lotus japonicus HOM05D001921 ORTHO05D001784 2.9e-06 56.6 89 33.7
Nitab4.5_0002992g0090 Nicotiana tabacum HOM05D001921 ORTHO05D001784 2.9e-06 56.6 132 31.8
Sed0007577 Sechium edule HOM05D001921 ORTHO05D001784 2.9e-06 56.6 146 30.8
Haze_01021 Corylus avellana HOM05D001921 ORTHO05D001784 3.8e-06 56.2 157 29.3
Glyma.13G212500 Glycine max HOM05D001921 ORTHO05D001784 3.8e-06 56.2 142 31.7
Gohir.A09G060900 Gossypium hirsutum HOM05D001921 ORTHO05D001784 3.8e-06 56.2 89 38.2
Phvul.006G158900 Phaseolus vulgaris HOM05D001921 ORTHO05D001784 3.8e-06 56.2 147 34.0
CANSAT78G1722 Cannabis sativa HOM05D001921 ORTHO05D001784 5.0e-06 55.8 87 36.8
CiPaw.02G088800 Carya illinoinensis HOM05D001921 ORTHO05D001784 5.0e-06 55.8 185 27.6
Thhalv10008606m.g Eutrema salsugineum HOM05D009961 ORTHO05D008483 5.0e-06 55.8 46 56.5
CAN.G1045.40 Capsicum annuum HOM05D001921 ORTHO05D001784 6.6e-06 55.5 154 31.8
CARHR020550 Cardamine hirsuta HOM05D009961 ORTHO05D008483 6.6e-06 55.5 142 31.0
Gohir.D09G059900 Gossypium hirsutum HOM05D001921 ORTHO05D001784 6.6e-06 55.5 89 38.2
Gorai.006G074600 Gossypium raimondii HOM05D001921 ORTHO05D001784 6.6e-06 55.5 89 38.2
Sp1g17840 Schrenkiella parvula HOM05D009961 ORTHO05D008483 6.6e-06 55.5 46 54.3
Glyma.15G100300 Glycine max HOM05D001921 ORTHO05D001784 8.6e-06 55.1 89 36.0
Sabra10G0013000 Salix brachista HOM05D001921 ORTHO05D001784 8.6e-06 55.1 86 36.0


User provided reference genes

Program Settings