Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.08G064600 Carya illinoinensis HOM05D004951 ORTHO05D005840 1.6e-121 439.5 227 100.0
Cfa013928 Carpinus fangiana HOM05D004951 ORTHO05D005840 6.9e-93 344.4 231 80.1
QL02p011069 Quercus lobata HOM05D004951 ORTHO05D005840 3.3e-87 325.5 227 75.8
CSS0031211 Camellia sinensis var. sinensis HOM05D004951 ORTHO05D005840 1.9e-79 299.7 228 68.4
GSVIVG01009867001 Vitis vinifera HOM05D004951 ORTHO05D005840 4.3e-79 298.5 231 69.3
Atru.chr2.1521 Acer truncatum HOM05D004951 ORTHO05D005840 6.2e-78 294.7 231 69.7
TAR381G0914 Trochodendron aralioides HOM05D004951 ORTHO05D005840 2.4e-77 292.7 230 69.1
Ciclev10002352m.g Citrus clementina HOM05D004951 ORTHO05D005840 4.5e-76 288.5 231 67.5
Dinv39502 Davidia involucrata HOM05D004951 ORTHO05D005840 1.0e-75 287.3 229 65.9
Ca_08030_v3 Cicer arietinum L. HOM05D004951 ORTHO05D005840 1.3e-75 287.0 230 66.1
Hma1.2p1_0638F.1_g193670 Hydrangea macrophylla HOM05D004951 ORTHO05D005840 2.2e-75 286.2 235 66.8
Eucgr.E00855 Eucalyptus grandis HOM05D004951 ORTHO05D005840 3.8e-75 285.4 229 68.1
Haze_22610 Corylus avellana HOM05D004951 ORTHO05D005840 1.1e-74 283.9 250 66.4
CANSAT78G0251 Cannabis sativa HOM05D004951 ORTHO05D005840 1.9e-74 283.1 231 63.2
Rhsim06G0023300 Rhododendron simsii HOM05D004951 ORTHO05D005840 5.5e-74 281.6 223 66.4
vmacro21713 Vaccinium macrocarpon HOM05D004951 ORTHO05D005840 7.1e-74 281.2 196 73.0
Gorai.005G111600 Gossypium raimondii HOM05D004951 ORTHO05D005840 9.3e-74 280.8 229 65.5
Actinidia15407 Actinidia chinensis HOM05D004951 ORTHO05D005840 1.6e-73 280.0 228 66.7
Gohir.A09G014000 Gossypium hirsutum HOM05D004951 ORTHO05D005840 1.6e-73 280.0 229 65.5
Gohir.D02G097900 Gossypium hirsutum HOM05D004951 ORTHO05D005840 1.6e-73 280.0 229 65.5
PGR031G1064 Punica granatum HOM05D004951 ORTHO05D005840 1.6e-73 280.0 226 67.7
COL.COLO4_26170 Corchorus olitorius HOM05D004951 ORTHO05D005840 2.7e-73 279.3 227 64.8
Gohir.A07G207200 Gossypium hirsutum HOM05D004951 ORTHO05D005840 3.5e-73 278.9 229 65.1
ClCG11G002570 Citrullus lanatus HOM05D004951 ORTHO05D005840 7.9e-73 277.7 225 65.8
Actinidia37925 Actinidia chinensis HOM05D004951 ORTHO05D005840 1.0e-72 277.3 230 65.7
Thecc.08G041400 Theobroma cacao HOM05D004951 ORTHO05D005840 1.3e-72 276.9 226 65.0
Duzib116G0591 Durio zibethinus HOM05D004951 ORTHO05D005840 2.3e-72 276.2 227 64.3
vmacro14381 Vaccinium macrocarpon HOM05D004951 ORTHO05D005840 2.3e-72 276.2 196 71.4
COL.COLO4_20267 Corchorus olitorius HOM05D004951 ORTHO05D005840 5.1e-72 275.0 199 70.4
MD10G1149500 Malus domestica HOM05D004951 ORTHO05D005840 5.1e-72 275.0 228 63.6
Nn5g29279 Nelumbo nucifera HOM05D004951 ORTHO05D005840 1.1e-71 273.9 231 61.5
Cpa.g.sc26.26 Carica papaya HOM05D004951 ORTHO05D005840 1.5e-71 273.5 226 63.3
THA.LOC104809415 Tarenaya hassleriana HOM05D004951 ORTHO05D005840 1.9e-71 273.1 200 68.5
PGR031G3408 Punica granatum HOM05D004951 ORTHO05D005840 3.3e-71 272.3 189 74.1
Lalb_Chr03g0040521 Lupinus albus HOM05D004951 ORTHO05D005840 5.7e-71 271.6 229 63.8
Manes.05G149800 Manihot esculenta HOM05D004951 ORTHO05D005840 9.6e-71 270.8 227 65.2
Psat6g222440 Pisum sativum HOM05D004951 ORTHO05D005840 9.6e-71 270.8 231 61.5
Potri.005G236800 Populus trichocarpa HOM05D004951 ORTHO05D005840 9.6e-71 270.8 225 63.1
Glyma.18G246500 Glycine max HOM05D004951 ORTHO05D005840 1.6e-70 270.0 228 65.4
Prupe.8G188100 Prunus persica HOM05D004951 ORTHO05D005840 2.1e-70 269.6 227 65.2
Glyma.09G246500 Glycine max HOM05D004951 ORTHO05D005840 3.7e-70 268.9 225 64.4
MD05G1155200 Malus domestica HOM05D004951 ORTHO05D005840 3.7e-70 268.9 231 61.0
Gohir.A07G207300 Gossypium hirsutum HOM05D004951 ORTHO05D005840 4.8e-70 268.5 227 63.9
Sc02g0008460 Simmondsia chinensis HOM05D004951 ORTHO05D005840 4.8e-70 268.5 230 61.7
Phvul.008G050600 Phaseolus vulgaris HOM05D004951 ORTHO05D005840 6.2e-70 268.1 227 65.2
PSO675G8856 Papaver somniferum HOM05D004951 ORTHO05D005840 1.1e-69 267.3 226 59.3
CsaV3_3G045700 Cucumis sativus L. HOM05D004951 ORTHO05D005840 1.8e-69 266.5 227 63.4
Eucgr.F02088 Eucalyptus grandis HOM05D004951 ORTHO05D005840 1.8e-69 266.5 230 63.5
VMungo1383G3289 Vigna mungo HOM05D004951 ORTHO05D005840 3.1e-69 265.8 227 64.3
Sabra05G0183100 Salix brachista HOM05D004951 ORTHO05D005840 5.3e-69 265.0 225 61.3
arahy.Tifrunner.gnm1.ann1.T7R5G6 Arachis hypogaea HOM05D004951 ORTHO05D005840 6.9e-69 264.6 232 62.5
Sed0001853 Sechium edule HOM05D004951 ORTHO05D005840 9.0e-69 264.2 227 61.2
ClCG05G018480 Citrullus lanatus HOM05D004951 ORTHO05D005840 1.2e-68 263.8 188 71.8
arahy.Tifrunner.gnm1.ann1.1I2LZG Arachis hypogaea HOM05D004951 ORTHO05D005840 5.8e-68 261.5 232 61.6
arahy.Tifrunner.gnm1.ann1.5C4441 Arachis hypogaea HOM05D004951 ORTHO05D005840 1.7e-67 260.0 228 62.7
Lsat_1_v5_gn_8_80440 Lactuca sativa HOM05D004951 ORTHO05D005840 1.7e-67 260.0 223 59.6
TPR.G15148 Trifolium pratense HOM05D004951 ORTHO05D005840 2.9e-67 259.2 232 58.6
PSO541G0679 Papaver somniferum HOM05D004951 ORTHO05D005840 6.5e-67 258.1 196 64.3
Lj1g0015493 Lotus japonicus HOM05D004951 ORTHO05D005840 8.4e-67 257.7 231 58.0
MSTRG.1208 Avicennia marina HOM05D004951 ORTHO05D005840 1.1e-66 257.3 230 58.3
Potri.002G024601 Populus trichocarpa HOM05D004951 ORTHO05D005840 3.2e-66 255.8 228 59.6
Oeu056857.1 Olea europaea HOM05D004951 ORTHO05D005840 5.5e-66 255.0 192 66.7
PSO675G7262 Papaver somniferum HOM05D004951 ORTHO05D005840 5.5e-66 255.0 227 57.7
TWI34G1799 Tripterygium wilfordii HOM05D004951 ORTHO05D005840 5.5e-66 255.0 228 60.1
TWI56G1488 Tripterygium wilfordii HOM05D004951 ORTHO05D005840 2.1e-65 253.1 228 60.5
ECA236G4786 Erigeron canadensis HOM05D004951 ORTHO05D005840 3.5e-65 252.3 221 60.2
HanXRQChr02g0039471 Helianthus annuus HOM05D004951 ORTHO05D005840 7.9e-65 251.1 223 57.8
Dinv31828 Davidia involucrata HOM05D004951 ORTHO05D005840 1.3e-64 250.4 196 68.4
Oeu024529.1 Olea europaea HOM05D004951 ORTHO05D005840 5.1e-64 248.4 232 56.9
HanXRQChr10g0300951 Helianthus annuus HOM05D004951 ORTHO05D005840 6.7e-64 248.1 204 60.8
CARHR069060 Cardamine hirsuta HOM05D004951 ORTHO05D005840 1.9e-63 246.5 192 62.0
Cc10_g01890 Coffea canephora HOM05D004951 ORTHO05D005840 2.5e-63 246.1 232 53.4
Aa31LG4G5890 Aethionema arabicum HOM05D004951 ORTHO05D005840 4.3e-63 245.4 224 56.2
Thhalv10019169m.g Eutrema salsugineum HOM05D004951 ORTHO05D005840 4.3e-63 245.4 192 62.0
CAN.G103.3 Capsicum annuum HOM05D004951 ORTHO05D005840 5.7e-63 245.0 230 58.3
TAR625G0428 Trochodendron aralioides HOM05D004951 ORTHO05D005840 1.3e-62 243.8 194 66.5
Carub.0002s2250 Capsella rubella HOM05D004951 ORTHO05D005840 1.6e-62 243.4 196 60.2
AL2G35650 Arabidopsis lyrata HOM05D004951 ORTHO05D005840 3.7e-62 242.3 192 60.4
Actinidia28598 Actinidia chinensis HOM05D004951 ORTHO05D005840 1.1e-61 240.7 227 59.9
FAN24G1417 Fragaria x ananassa HOM05D004951 ORTHO05D005840 2.4e-61 239.6 246 56.9
Atru.chr13.322 Acer truncatum HOM05D004951 ORTHO05D005840 3.1e-61 239.2 199 64.8
Sopen05g032630 Solanum pennellii HOM05D004951 ORTHO05D005840 3.1e-61 239.2 230 56.5
AT1G75670 Arabidopsis thaliana HOM05D004951 ORTHO05D005840 4.1e-61 238.8 192 59.4
FvH4_2g17590 Fragaria vesca HOM05D004951 ORTHO05D005840 4.1e-61 238.8 246 56.9
RcHm_v2.0_Chr6g0282531 Rosa chinensis HOM05D004951 ORTHO05D005840 4.1e-61 238.8 244 54.5
Sp5g30770 Schrenkiella parvula HOM05D004951 ORTHO05D005840 5.3e-61 238.4 192 58.9
Medtr7g080860 Medicago truncatula HOM05D004951 ORTHO05D005840 6.9e-61 238.0 234 56.4
Solyc05g054140.3 Solanum lycopersicum HOM05D004951 ORTHO05D005840 6.9e-61 238.0 230 55.2
FAN15G2157 Fragaria x ananassa HOM05D004951 ORTHO05D005840 9.0e-61 237.7 246 56.5
EL10Ac1g02264 Beta vulgaris HOM05D004951 ORTHO05D005840 1.5e-60 236.9 229 55.5
BcaC03g15607 Brassica carinata HOM05D004951 ORTHO05D005840 1.5e-60 236.9 195 57.9
BolC2t09323H Brassica oleracea HOM05D004951 ORTHO05D005840 1.5e-60 236.9 195 57.9
PGSC0003DMG400008458 Solanum tuberosum HOM05D004951 ORTHO05D005840 3.4e-60 235.7 230 56.5
BraA02t07047Z Brassica rapa HOM05D004951 ORTHO05D005840 7.7e-60 234.6 195 57.4
C02p33810 Brassica napus HOM05D004951 ORTHO05D005840 1.0e-59 234.2 188 59.0
Nitab4.5_0001242g0070 Nicotiana tabacum HOM05D004951 ORTHO05D005840 1.3e-59 233.8 231 55.4
A02p20120 Brassica napus HOM05D004951 ORTHO05D005840 1.7e-59 233.4 188 59.0
SGA_v2.0_scaffold11G05895 Striga asiatica HOM05D004951 ORTHO05D005840 2.2e-59 233.0 230 53.0
SalBow8G2430 Salvia bowleyana HOM05D004951 ORTHO05D005840 6.5e-59 231.5 227 55.9
Sed0010580 Sechium edule HOM05D004951 ORTHO05D005840 6.5e-59 231.5 200 60.5
Peaxi162Scf00186g00023 Petunia axillaris HOM05D004951 ORTHO05D005840 8.5e-59 231.1 246 52.8
Ah.02g126690 Amaranthus hybridus HOM05D004951 ORTHO05D005840 5.5e-58 228.4 230 55.7
FAN27G0910 Fragaria x ananassa HOM05D004951 ORTHO05D005840 1.6e-57 226.9 264 52.3
Migut.G00984 Erythranthe guttata HOM05D004951 ORTHO05D005840 7.9e-57 224.6 201 54.2
Aqoxy3G00621 Aquilegia oxysepala HOM05D004951 ORTHO05D005840 1.0e-56 224.2 215 58.1
FAN15G3167 Fragaria x ananassa HOM05D004951 ORTHO05D005840 3.0e-56 222.6 187 62.6
Nn1g08637 Nelumbo nucifera HOM05D004951 ORTHO05D005840 3.9e-56 222.2 152 73.7
Nitab4.5_0014171g0010 Nicotiana tabacum HOM05D004951 ORTHO05D005840 8.8e-56 221.1 258 50.4
BcaC08g47055 Brassica carinata HOM05D004951 ORTHO05D005840 2.0e-55 219.9 185 56.8
AUR62035728 Chenopodium quinoa HOM05D004951 ORTHO05D005840 7.4e-55 218.0 176 63.6
Migut.C00815 Erythranthe guttata HOM05D004951 ORTHO05D005840 7.4e-55 218.0 199 54.3
AUR62035440 Chenopodium quinoa HOM05D004951 ORTHO05D005840 1.3e-54 217.2 176 63.6
Lalb_Chr01g0021631 Lupinus albus HOM05D004951 ORTHO05D005840 1.3e-54 217.2 230 54.8
HPP92_017328 Vanilla planifolia HOM05D004951 ORTHO05D005840 3.7e-54 215.7 232 50.0
DCAR_008455 Daucus carota HOM05D004951 ORTHO05D005840 4.2e-50 202.2 161 62.7
Gohir.A02G093500 Gossypium hirsutum HOM05D004951 ORTHO05D005840 7.9e-49 198.0 142 71.1
CDE05G3598 Ceratophyllum demersum HOM05D004951 ORTHO05D005840 1.4e-48 197.2 184 53.3
CDE12G0586 Ceratophyllum demersum HOM05D004951 ORTHO05D005840 1.8e-48 196.8 184 53.8
BcaB05g24929 Brassica carinata HOM05D000120 ORTHO05D000068 6.7e-48 194.9 159 59.7
unitig_8.g4914 Utricularia gibba HOM05D004951 ORTHO05D005840 7.4e-47 191.4 196 51.5
Lj4A795G31 Lonicera japonica HOM05D004951 ORTHO05D005840 4.8e-46 188.7 123 77.2
MBI05_g38365_MAGBIO Magnolia biondii HOM05D004951 ORTHO05D005840 7.0e-45 184.9 231 48.5
Oeu024522.1 Olea europaea HOM05D004951 ORTHO05D005840 1.2e-44 184.1 149 63.8
ATR0068G029 Amborella trichopoda HOM05D004951 ORTHO05D005840 4.2e-42 175.6 201 52.2
SEGI_29847 Sequoiadendron giganteum HOM05D004951 ORTHO05D005840 1.8e-40 170.2 208 46.2
Os12g0533600 Oryza sativa ssp. japonica HOM05D004951 ORTHO05D005840 3.0e-40 169.5 194 48.5
CAN.G230.10 Capsicum annuum HOM05D004951 ORTHO05D005840 7.0e-37 158.3 130 63.1
Zm00001eb410680 Zea mays HOM05D004951 ORTHO05D005840 4.2e-34 149.1 232 40.9
Os06g0168400 Oryza sativa ssp. japonica HOM05D004951 ORTHO05D005840 7.2e-34 148.3 155 52.3
Pp3c15_23380 Physcomitrium patens HOM05D004951 ORTHO05D005840 1.2e-33 147.5 226 41.2
Mapoly0115s0026 Marchantia polymorpha HOM05D004951 ORTHO05D005840 3.0e-32 142.9 200 43.5
AagrBONN_evm.TU.Sc2ySwM_344.4244 Anthoceros agrestis HOM05D004951 ORTHO05D005840 6.3e-30 135.2 193 42.5
AagrBONN_evm.TU.Sc2ySwM_368.3390 Anthoceros agrestis HOM05D004951 ORTHO05D005840 1.4e-29 134.0 235 38.7
SMO356G0424 Selaginella moellendorffii HOM05D004951 ORTHO05D005840 2.7e-28 129.8 185 43.2
PGSC0003DMG400019052 Solanum tuberosum HOM05D004951 ORTHO05D005840 8.0e-25 118.2 116 52.6
Sed0021847 Sechium edule HOM05D004951 ORTHO05D005840 5.2e-24 115.5 143 47.6
Hma1.2p1_2299F.1_g319190 Hydrangea macrophylla HOM05D004951 ORTHO05D005840 2.2e-22 110.2 76 76.3
ATR0585G020 Amborella trichopoda HOM05D004951 ORTHO05D005840 4.1e-21 105.9 88 61.4
SEGI_15858 Sequoiadendron giganteum HOM05D004951 ORTHO05D005840 7.2e-18 95.1 99 51.5
BolC6t40000H Brassica oleracea HOM05D004951 ORTHO05D005840 5.4e-13 79.0 76 48.7
CBR_g74690 Chara braunii HOM05D004951 ORTHO05D005840 1.0e-08 64.7 162 30.9
Cre02.g086750 Chlamydomonas reinhardtii HOM05D004951 ORTHO05D005840 3.4e-07 59.7 177 27.7
Hma1.2p1_0386F.1_g141900 Hydrangea macrophylla HOM05D004951 ORTHO05D005840 9.8e-07 58.2 77 46.8
MELO3C003766.2 Cucumis melo HOM05D004951 ORTHO05D005840 1.3e-06 57.8 51 62.7
Hma1.2p1_0312F.1_g121470 Hydrangea macrophylla HOM05D004951 ORTHO05D005840 2.2e-06 57.0 77 45.5
GSVIVG01010657001 Vitis vinifera HOM05D002399 ORTHO05D005840 2.9e-06 56.6 36 77.8


User provided reference genes

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