Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.08G064300 Carya illinoinensis HOM05D005344 ORTHO05D006444 6.3e-67 257.3 129 100.0
Duzib093G0333 Durio zibethinus HOM05D005344 ORTHO05D006444 6.1e-62 240.7 129 93.0
QL02p011006 Quercus lobata HOM05D005344 ORTHO05D006444 1.4e-61 239.6 128 93.0
GSVIVG01009861001 Vitis vinifera HOM05D005344 ORTHO05D006444 3.0e-61 238.4 129 92.2
Nn6g32300 Nelumbo nucifera HOM05D005344 ORTHO05D006444 6.7e-61 237.3 129 91.5
Thecc.08G040900 Theobroma cacao HOM05D005344 ORTHO05D006444 6.7e-61 237.3 129 91.5
QL03p018250 Quercus lobata HOM05D005344 ORTHO05D006444 1.1e-60 236.5 128 91.4
PGR083G0019 Punica granatum HOM05D005344 ORTHO05D006444 2.6e-60 235.3 129 90.7
Gohir.D05G218100 Gossypium hirsutum HOM05D005344 ORTHO05D006444 3.3e-60 235.0 129 89.9
Cfa013923 Carpinus fangiana HOM05D005344 ORTHO05D006444 4.4e-60 234.6 128 91.4
Gohir.A05G214800 Gossypium hirsutum HOM05D005344 ORTHO05D006444 5.7e-60 234.2 129 89.9
CANSAT56G2098 Cannabis sativa HOM05D005344 ORTHO05D006444 4.8e-59 231.1 129 87.6
CSS0034614 Camellia sinensis var. sinensis HOM05D005344 ORTHO05D006444 6.3e-59 230.7 129 89.1
Cc10_g01930 Coffea canephora HOM05D005344 ORTHO05D006444 6.3e-59 230.7 129 89.9
Potri.004G228566 Populus trichocarpa HOM05D005344 ORTHO05D006444 8.2e-59 230.3 129 89.1
Prupe.1G182400 Prunus persica HOM05D005344 ORTHO05D006444 1.1e-58 229.9 129 88.4
PGR102G3231 Punica granatum HOM05D005344 ORTHO05D006444 1.1e-58 229.9 127 89.0
Dinv39499 Davidia involucrata HOM05D005344 ORTHO05D006444 1.4e-58 229.6 129 89.1
Atru.chr12.1135 Acer truncatum HOM05D005344 ORTHO05D006444 1.8e-58 229.2 127 87.4
Manes.18G015800 Manihot esculenta HOM05D005344 ORTHO05D006444 1.8e-58 229.2 129 89.1
Prupe.1G368800 Prunus persica HOM05D005344 ORTHO05D006444 1.8e-58 229.2 129 88.4
TAR381G0484 Trochodendron aralioides HOM05D005344 ORTHO05D006444 2.4e-58 228.8 129 87.6
CANSAT56G2754 Cannabis sativa HOM05D005344 ORTHO05D006444 5.3e-58 227.6 129 87.6
FAN15G2308 Fragaria x ananassa HOM05D005344 ORTHO05D006444 6.9e-58 227.3 129 87.6
TWI75G1031 Tripterygium wilfordii HOM05D005344 ORTHO05D006444 9.1e-58 226.9 129 87.6
MD02G1241500 Malus domestica HOM05D005344 ORTHO05D006444 1.2e-57 226.5 129 86.0
Cpa.g.sc116.53 Carica papaya HOM05D005344 ORTHO05D006444 1.5e-57 226.1 127 88.2
Haze_22604 Corylus avellana HOM05D005344 ORTHO05D006444 1.5e-57 226.1 119 93.3
RcHm_v2.0_Chr6g0302491 Rosa chinensis HOM05D005344 ORTHO05D006444 1.5e-57 226.1 129 86.8
MD07G1075400 Malus domestica HOM05D005344 ORTHO05D006444 2.6e-57 225.3 129 86.0
ECA236G2959 Erigeron canadensis HOM05D005344 ORTHO05D006444 4.5e-57 224.6 129 85.3
FvH4_2g38800 Fragaria vesca HOM05D005344 ORTHO05D006444 7.7e-57 223.8 129 86.0
Sed0018322 Sechium edule HOM05D005344 ORTHO05D006444 7.7e-57 223.8 127 86.6
TWI31G0971 Tripterygium wilfordii HOM05D005344 ORTHO05D006444 1.0e-56 223.4 129 86.0
Psat5g014400 Pisum sativum HOM05D005344 ORTHO05D006444 1.7e-56 222.6 129 84.5
arahy.Tifrunner.gnm1.ann1.Y8FRL8 Arachis hypogaea HOM05D005344 ORTHO05D006444 2.2e-56 222.2 129 82.9
Actinidia15404 Actinidia chinensis HOM05D005344 ORTHO05D006444 2.9e-56 221.9 123 84.6
Lj1g0020845 Lotus japonicus HOM05D005344 ORTHO05D006444 2.9e-56 221.9 129 84.5
Medtr3g113260 Medicago truncatula HOM05D005344 ORTHO05D006444 3.8e-56 221.5 129 82.9
HanXRQChr15g0480961 Helianthus annuus HOM05D005344 ORTHO05D006444 5.0e-56 221.1 129 86.0
Lsat_1_v5_gn_7_29421 Lactuca sativa HOM05D005344 ORTHO05D006444 5.0e-56 221.1 129 85.3
Medtr1g013440 Medicago truncatula HOM05D005344 ORTHO05D006444 5.0e-56 221.1 129 83.7
HanXRQChr04g0119171 Helianthus annuus HOM05D005344 ORTHO05D006444 6.5e-56 220.7 129 84.5
Lalb_Chr11g0061991 Lupinus albus HOM05D005344 ORTHO05D006444 8.5e-56 220.3 129 84.5
COL.COLO4_32025 Corchorus olitorius HOM05D005344 ORTHO05D006444 1.4e-55 219.5 119 90.8
Gorai.009G225000 Gossypium raimondii HOM05D005344 ORTHO05D006444 2.5e-55 218.8 119 89.1
TPR.G38895 Trifolium pratense HOM05D005344 ORTHO05D006444 2.5e-55 218.8 129 82.9
Eucgr.F01631 Eucalyptus grandis HOM05D005344 ORTHO05D006444 3.2e-55 218.4 124 87.1
CSS0046670 Camellia sinensis var. sinensis HOM05D005344 ORTHO05D006444 5.5e-55 217.6 121 87.6
CsaV3_3G045650 Cucumis sativus L. HOM05D005344 ORTHO05D006444 7.2e-55 217.2 127 85.0
Rhsim07G0245900 Rhododendron simsii HOM05D005344 ORTHO05D006444 7.2e-55 217.2 119 85.7
CSS0046173 Camellia sinensis var. sinensis HOM05D005344 ORTHO05D006444 1.2e-54 216.5 119 89.1
Sabra01G0173600 Salix brachista HOM05D005344 ORTHO05D006444 1.2e-54 216.5 120 87.5
PSO541G4852 Papaver somniferum HOM05D005344 ORTHO05D006444 2.1e-54 215.7 129 82.2
PSO675G5369 Papaver somniferum HOM05D005344 ORTHO05D006444 2.1e-54 215.7 129 82.2
TPR.G5807 Trifolium pratense HOM05D005344 ORTHO05D006444 2.1e-54 215.7 130 82.3
Glyma.06G025600 Glycine max HOM05D005344 ORTHO05D006444 2.7e-54 215.3 129 82.9
Phvul.009G015400 Phaseolus vulgaris HOM05D005344 ORTHO05D006444 2.7e-54 215.3 129 84.5
Nitab4.5_0001988g0010 Nicotiana tabacum HOM05D005344 ORTHO05D006444 3.6e-54 214.9 129 82.2
Migut.N03145 Erythranthe guttata HOM05D005344 ORTHO05D006444 4.7e-54 214.5 129 81.4
Potri.012G106900 Populus trichocarpa HOM05D005344 ORTHO05D006444 4.7e-54 214.5 119 88.2
Solyc04g081220.3 Solanum lycopersicum HOM05D005344 ORTHO05D006444 4.7e-54 214.5 129 82.9
Sopen04g034830 Solanum pennellii HOM05D005344 ORTHO05D006444 4.7e-54 214.5 129 82.9
BcaB06g27347 Brassica carinata HOM05D005344 ORTHO05D006444 7.9e-54 213.8 129 81.4
BolC4t26183H Brassica oleracea HOM05D005344 ORTHO05D006444 7.9e-54 213.8 129 81.4
BraA04t16898Z Brassica rapa HOM05D005344 ORTHO05D006444 7.9e-54 213.8 129 81.4
Sc02g0008440 Simmondsia chinensis HOM05D005344 ORTHO05D006444 7.9e-54 213.8 129 79.1
PGSC0003DMG400003723 Solanum tuberosum HOM05D005344 ORTHO05D006444 7.9e-54 213.8 129 82.2
vmacro04337 Vaccinium macrocarpon HOM05D005344 ORTHO05D006444 1.0e-53 213.4 119 84.9
Nitab4.5_0006992g0020 Nicotiana tabacum HOM05D005344 ORTHO05D006444 1.4e-53 213.0 129 81.4
Thhalv10027992m.g Eutrema salsugineum HOM05D005344 ORTHO05D006444 2.3e-53 212.2 127 81.9
DCAR_013854 Daucus carota HOM05D005344 ORTHO05D006444 3.0e-53 211.8 119 84.0
Sp7g02390 Schrenkiella parvula HOM05D005344 ORTHO05D006444 3.0e-53 211.8 127 80.3
AT5G39600 Arabidopsis thaliana HOM05D005344 ORTHO05D006444 3.9e-53 211.5 127 81.9
Peaxi162Scf00287g01714 Petunia axillaris HOM05D005344 ORTHO05D006444 6.7e-53 210.7 129 80.6
SGA_v2.0_scaffold47G17494 Striga asiatica HOM05D005344 ORTHO05D006444 6.7e-53 210.7 129 80.6
Aa31LG9G16480 Aethionema arabicum HOM05D005344 ORTHO05D006444 8.8e-53 210.3 127 79.5
FAN20G2570 Fragaria x ananassa HOM05D005344 ORTHO05D006444 8.8e-53 210.3 119 85.7
TAR625G0974 Trochodendron aralioides HOM05D005344 ORTHO05D006444 1.1e-52 209.9 129 79.1
MSTRG.24255 Avicennia marina HOM05D005344 ORTHO05D006444 1.5e-52 209.5 129 81.4
Carub.0007s3634 Capsella rubella HOM05D005344 ORTHO05D006444 1.5e-52 209.5 127 80.3
ClCG05G018520 Citrullus lanatus HOM05D005344 ORTHO05D006444 1.5e-52 209.5 119 86.6
CDE05G1229 Ceratophyllum demersum HOM05D005344 ORTHO05D006444 4.4e-52 208.0 129 79.1
CARHR262690 Cardamine hirsuta HOM05D005344 ORTHO05D006444 7.4e-52 207.2 127 81.1
Glyma.04G025800 Glycine max HOM05D005344 ORTHO05D006444 9.7e-52 206.8 129 80.6
Oeu024518.1 Olea europaea HOM05D005344 ORTHO05D006444 1.3e-51 206.5 119 84.0
Oeu031192.1 Olea europaea HOM05D005344 ORTHO05D006444 3.7e-51 204.9 119 83.2
AL7G50710 Arabidopsis lyrata HOM05D005344 ORTHO05D006444 6.3e-51 204.1 127 78.7
arahy.Tifrunner.gnm1.ann1.0YI8WX Arachis hypogaea HOM05D005344 ORTHO05D006444 6.3e-51 204.1 119 80.7
Ciclev10002838m.g Citrus clementina HOM05D005344 ORTHO05D006444 1.4e-50 203.0 127 79.5
arahy.Tifrunner.gnm1.ann1.2J2T1L Arachis hypogaea HOM05D005344 ORTHO05D006444 3.1e-50 201.8 122 78.7
Ca_16814_v3 Cicer arietinum L. HOM05D005344 ORTHO05D006444 3.1e-50 201.8 119 81.5
Aqoxy6G02319 Aquilegia oxysepala HOM05D005344 ORTHO05D006444 7.0e-50 200.7 129 76.7
MELO3C003771.2 Cucumis melo HOM05D005344 ORTHO05D006444 9.1e-50 200.3 113 87.6
SalBow8G2912 Salvia bowleyana HOM05D005344 ORTHO05D006444 9.1e-50 200.3 119 82.4
A04p12340 Brassica napus HOM05D005344 ORTHO05D006444 1.2e-49 199.9 121 80.2
C04p46010 Brassica napus HOM05D005344 ORTHO05D006444 1.2e-49 199.9 121 80.2
VMungo1309G2030 Vigna mungo HOM05D005344 ORTHO05D006444 1.6e-49 199.5 122 82.0
FvH4_1g25620 Fragaria vesca HOM05D005344 ORTHO05D006444 4.5e-49 198.0 127 78.0
CAN.G1271.12 Capsicum annuum HOM05D005344 ORTHO05D006444 5.9e-49 197.6 119 80.7
CDE05G1331 Ceratophyllum demersum HOM05D005344 ORTHO05D006444 5.9e-49 197.6 119 79.8
Nitab4.5_0005425g0020 Nicotiana tabacum HOM05D005344 ORTHO05D006444 5.9e-49 197.6 119 79.8
arahy.Tifrunner.gnm1.ann1.NGB00B Arachis hypogaea HOM05D005344 ORTHO05D006444 1.3e-48 196.4 119 79.0
Aqoxy6G02944 Aquilegia oxysepala HOM05D005344 ORTHO05D006444 2.9e-48 195.3 119 80.7
TAR625G1223 Trochodendron aralioides HOM05D005344 ORTHO05D006444 8.5e-48 193.7 117 78.6
HPP92_014936 Vanilla planifolia HOM05D005344 ORTHO05D006444 1.5e-47 193.0 128 76.6
EL10Ac1g02258 Beta vulgaris HOM05D005344 ORTHO05D006444 3.2e-47 191.8 128 71.1
unitig_899.g15276 Utricularia gibba HOM05D005344 ORTHO05D006444 1.6e-46 189.5 148 67.6
FAN23G0736 Fragaria x ananassa HOM05D005344 ORTHO05D006444 6.1e-46 187.6 130 75.4
FAN26G0652 Fragaria x ananassa HOM05D005344 ORTHO05D006444 8.0e-46 187.2 122 75.4
AUR62035723 Chenopodium quinoa HOM05D005344 ORTHO05D006444 1.4e-45 186.4 146 64.4
MBI05_g26505_MAGBIO Magnolia biondii HOM05D005344 ORTHO05D006444 2.3e-45 185.7 107 86.0
SHI08085 Sapria himalayana HOM05D005344 ORTHO05D006444 4.0e-45 184.9 119 76.5
AUR62035436 Chenopodium quinoa HOM05D005344 ORTHO05D006444 2.6e-44 182.2 119 71.4
FAN19G0275 Fragaria x ananassa HOM05D005344 ORTHO05D006444 2.6e-44 182.2 121 75.2
arahy.Tifrunner.gnm1.ann1.3U1GZ3 Arachis hypogaea HOM05D005344 ORTHO05D006444 5.7e-44 181.0 107 81.3
Manes.09G054100 Manihot esculenta HOM05D005344 ORTHO05D006444 1.3e-43 179.9 119 74.8
arahy.Tifrunner.gnm1.ann1.IGJ8TG Arachis hypogaea HOM05D005344 ORTHO05D006444 3.7e-43 178.3 105 81.9
ATR0665G498 Amborella trichopoda HOM05D005344 ORTHO05D006444 7.0e-42 174.1 129 70.5
Atru.chr4.1572 Acer truncatum HOM05D005344 ORTHO05D006444 9.1e-42 173.7 133 69.9
arahy.Tifrunner.gnm1.ann1.Y1NSFR Arachis hypogaea HOM05D005344 ORTHO05D006444 1.2e-38 163.3 96 82.3
arahy.Tifrunner.gnm1.ann1.2QY3VR Arachis hypogaea HOM05D005344 ORTHO05D006444 3.6e-38 161.8 109 75.2
arahy.Tifrunner.gnm1.ann1.ZTTZ43 Arachis hypogaea HOM05D005344 ORTHO05D006444 6.1e-38 161.0 96 81.2
arahy.Tifrunner.gnm1.ann1.H9RICG Arachis hypogaea HOM05D005344 ORTHO05D006444 1.0e-37 160.2 95 81.1
Gorai.005G111500 Gossypium raimondii HOM05D005344 ORTHO05D006444 8.8e-37 157.1 100 78.0
MSTRG.22330 Avicennia marina HOM05D005344 ORTHO05D006444 4.8e-35 151.4 97 77.3
Pp3c9_11020 Physcomitrium patens HOM05D005344 ORTHO05D006444 2.7e-33 145.6 129 57.4
Mapoly0151s0020 Marchantia polymorpha HOM05D005344 ORTHO05D006444 2.9e-32 142.1 113 57.5
Os02g0282100 Oryza sativa ssp. japonica HOM05D005344 ORTHO05D006444 6.5e-32 141.0 143 51.7
MBI07_g11722_MAGBIO Magnolia biondii HOM05D005344 ORTHO05D006444 3.2e-31 138.7 85 81.2
ATR0605G109 Amborella trichopoda HOM05D005344 ORTHO05D006444 5.2e-29 131.3 92 72.8
Zm00001eb237200 Zea mays HOM05D005344 ORTHO05D006444 5.2e-29 131.3 141 48.2
AagrBONN_evm.TU.Sc2ySwM_117.1156 Anthoceros agrestis HOM05D005344 ORTHO05D006444 8.8e-29 130.6 99 58.6
Hund00462 Selenicereus undatus HOM05D005344 ORTHO05D006444 5.7e-28 127.9 113 54.9
arahy.Tifrunner.gnm1.ann1.3DP3ZG Arachis hypogaea HOM05D005344 ORTHO05D006444 4.3e-15 85.1 51 78.4
CSS0040415 Camellia sinensis var. sinensis HOM05D005344 ORTHO05D006444 5.4e-10 68.2 39 79.5
CSS0035037 Camellia sinensis var. sinensis HOM05D005344 ORTHO05D006444 3.9e-08 62.0 39 79.5
Nn5g29273 Nelumbo nucifera HOM05D005344 ORTHO05D006444 3.3e-07 58.9 32 84.4
CBR_g48744 Chara braunii HOM05D005344 ORTHO05D006444 1.2e-06 57.0 66 42.4


User provided reference genes

Program Settings