Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.08G062700 Carya illinoinensis HOM05D004539 ORTHO05D005482 4.8e-294 1013.8 541 100.0
Cfa013903 Carpinus fangiana HOM05D004539 ORTHO05D005482 1.8e-192 676.4 544 73.0
Haze_22584 Corylus avellana HOM05D004539 ORTHO05D005482 1.7e-182 643.3 542 70.3
Manes.05G152500 Manihot esculenta HOM05D004539 ORTHO05D005482 2.6e-175 619.4 560 64.1
Thecc.04G277100 Theobroma cacao HOM05D004539 ORTHO05D005482 8.5e-174 614.4 548 68.1
Dinv31810 Davidia involucrata HOM05D004539 ORTHO05D005482 1.1e-173 614.0 549 61.7
Prupe.1G370700 Prunus persica HOM05D004539 ORTHO05D005482 7.9e-172 607.8 553 63.3
TAR629G0090 Trochodendron aralioides HOM05D004539 ORTHO05D005482 1.3e-169 600.5 563 61.3
COL.COLO4_16338 Corchorus olitorius HOM05D004539 ORTHO05D005482 2.5e-165 586.3 547 60.9
Dinv39486 Davidia involucrata HOM05D004539 ORTHO05D005482 7.2e-165 584.7 549 61.6
Atru.chr13.359 Acer truncatum HOM05D004539 ORTHO05D005482 3.6e-164 582.4 547 64.2
Duzib192G0399 Durio zibethinus HOM05D004539 ORTHO05D005482 7.9e-164 581.3 548 62.0
CANSAT54G2989 Cannabis sativa HOM05D004539 ORTHO05D005482 1.4e-163 580.5 547 59.6
COL.COLO4_38586 Corchorus olitorius HOM05D004539 ORTHO05D005482 3.9e-163 578.9 544 60.7
MD08G1018100 Malus domestica HOM05D004539 ORTHO05D005482 7.4e-162 574.7 546 61.7
Potri.005G234800 Populus trichocarpa HOM05D004539 ORTHO05D005482 9.7e-162 574.3 546 63.6
MD15G1017400 Malus domestica HOM05D004539 ORTHO05D005482 1.3e-161 573.9 551 61.3
Nn6g32243 Nelumbo nucifera HOM05D004539 ORTHO05D005482 2.8e-161 572.8 551 59.7
vmacro21700 Vaccinium macrocarpon HOM05D004539 ORTHO05D005482 1.8e-160 570.1 548 62.2
TWI60G0405 Tripterygium wilfordii HOM05D004539 ORTHO05D005482 5.9e-159 565.1 551 60.1
Rhsim06G0026400 Rhododendron simsii HOM05D004539 ORTHO05D005482 1.7e-158 563.5 545 60.9
Gorai.001G253500 Gossypium raimondii HOM05D004539 ORTHO05D005482 1.1e-157 560.8 546 59.9
Gohir.D07G219000 Gossypium hirsutum HOM05D004539 ORTHO05D005482 2.5e-157 559.7 546 59.7
Sabra05G0181000 Salix brachista HOM05D004539 ORTHO05D005482 2.5e-157 559.7 547 62.0
Cpa.g.sc147.12 Carica papaya HOM05D004539 ORTHO05D005482 4.2e-157 558.9 551 58.1
TAR628G0025 Trochodendron aralioides HOM05D004539 ORTHO05D005482 7.2e-157 558.1 557 58.2
Gohir.A07G212900 Gossypium hirsutum HOM05D004539 ORTHO05D005482 1.4e-155 553.9 546 59.5
Ciclev10004791m.g Citrus clementina HOM05D004539 ORTHO05D005482 3.7e-153 545.8 551 61.9
PGR031G2058 Punica granatum HOM05D004539 ORTHO05D005482 2.4e-152 543.1 552 59.4
Sed0017053 Sechium edule HOM05D004539 ORTHO05D005482 7.0e-152 541.6 546 59.5
GSVIVG01009825001 Vitis vinifera HOM05D004539 ORTHO05D005482 7.0e-152 541.6 540 60.2
Hma1.2p1_0773F.1_g216150 Hydrangea macrophylla HOM05D004539 ORTHO05D005482 1.6e-151 540.4 562 57.3
CsaV3_3G001200 Cucumis sativus L. HOM05D004539 ORTHO05D005482 2.0e-151 540.0 555 59.5
Sabra02G0022100 Salix brachista HOM05D004539 ORTHO05D005482 2.7e-151 539.7 547 60.0
Hund17219 Selenicereus undatus HOM05D004539 ORTHO05D005482 3.5e-151 539.3 545 57.2
Glyma.17G076700 Glycine max HOM05D004539 ORTHO05D005482 4.5e-151 538.9 550 60.2
Cpa.g.sc140.19 Carica papaya HOM05D004539 ORTHO05D005482 5.9e-151 538.5 559 59.2
DCAR_013849 Daucus carota HOM05D004539 ORTHO05D005482 5.9e-151 538.5 550 56.9
Glyma.05G023000 Glycine max HOM05D004539 ORTHO05D005482 8.5e-150 534.6 549 57.0
Sed0008828 Sechium edule HOM05D004539 ORTHO05D005482 1.9e-149 533.5 545 59.4
MELO3C013810.2 Cucumis melo HOM05D004539 ORTHO05D005482 4.7e-148 528.9 544 59.6
Lj4A486G10 Lonicera japonica HOM05D004539 ORTHO05D005482 6.1e-148 528.5 600 54.5
VMungo1215G0403 Vigna mungo HOM05D004539 ORTHO05D005482 1.8e-147 526.9 561 59.4
Lj1g0010849 Lotus japonicus HOM05D004539 ORTHO05D005482 5.2e-147 525.4 547 57.8
ClCG05G018590 Citrullus lanatus HOM05D004539 ORTHO05D005482 9.8e-146 521.2 624 54.2
Hund26867 Selenicereus undatus HOM05D004539 ORTHO05D005482 2.2e-145 520.0 542 55.0
Sc02g0002900 Simmondsia chinensis HOM05D004539 ORTHO05D005482 2.0e-143 513.5 543 58.0
Phvul.003G186400 Phaseolus vulgaris HOM05D004539 ORTHO05D005482 1.3e-142 510.8 558 58.2
Lj4C484T3 Lonicera japonica HOM05D004539 ORTHO05D005482 2.9e-142 509.6 502 58.4
Ciclev10011488m.g Citrus clementina HOM05D004539 ORTHO05D005482 5.5e-141 505.4 535 59.8
arahy.Tifrunner.gnm1.ann1.D3BLAG Arachis hypogaea HOM05D004539 ORTHO05D005482 3.6e-140 502.7 568 57.4
Lalb_Chr03g0033831 Lupinus albus HOM05D004539 ORTHO05D005482 3.1e-136 489.6 545 52.3
Actinidia29798 Actinidia chinensis HOM05D004539 ORTHO05D005482 5.4e-136 488.8 552 54.7
Lsat_1_v5_gn_4_116341 Lactuca sativa HOM05D004539 ORTHO05D005482 5.4e-136 488.8 548 52.6
Cc10_g02110 Coffea canephora HOM05D004539 ORTHO05D005482 3.5e-135 486.1 547 56.3
Lj2g0012026 Lotus japonicus HOM05D004539 ORTHO05D005482 5.0e-134 482.3 555 55.1
Ca_11952_v3 Cicer arietinum L. HOM05D004539 ORTHO05D005482 1.5e-133 480.7 555 54.6
Aqoxy7G01402 Aquilegia oxysepala HOM05D004539 ORTHO05D005482 9.5e-133 478.0 487 56.9
Oeu036929.3 Olea europaea HOM05D004539 ORTHO05D005482 4.0e-131 472.6 586 49.1
Ca_22519_v3 Cicer arietinum L. HOM05D004539 ORTHO05D005482 1.2e-130 471.1 555 54.1
ECA232G1826 Erigeron canadensis HOM05D004539 ORTHO05D005482 5.7e-130 468.8 548 54.4
THA.LOC104813189 Tarenaya hassleriana HOM05D004539 ORTHO05D005482 7.5e-130 468.4 557 52.6
SalBow6G1219 Salvia bowleyana HOM05D004539 ORTHO05D005482 9.8e-130 468.0 547 52.5
arahy.Tifrunner.gnm1.ann1.ME0SR7 Arachis hypogaea HOM05D004539 ORTHO05D005482 7.0e-128 461.8 558 53.6
SGA_v2.0_scaffold92G28288 Striga asiatica HOM05D004539 ORTHO05D005482 2.0e-127 460.3 568 51.2
Psat7g263720 Pisum sativum HOM05D004539 ORTHO05D005482 3.5e-127 459.5 557 53.9
SGA_v2.0_scaffold4G01895 Striga asiatica HOM05D004539 ORTHO05D005482 3.0e-126 456.4 574 50.3
AUR62034567 Chenopodium quinoa HOM05D004539 ORTHO05D005482 5.0e-126 455.7 543 54.7
Thhalv10010315m.g Eutrema salsugineum HOM05D004539 ORTHO05D005482 8.6e-126 454.9 542 52.6
AUR62042221 Chenopodium quinoa HOM05D004539 ORTHO05D005482 4.3e-125 452.6 543 55.2
Nitab4.5_0012730g0010 Nicotiana tabacum HOM05D004539 ORTHO05D005482 6.2e-124 448.7 553 54.8
MSTRG.25219 Avicennia marina HOM05D004539 ORTHO05D005482 8.0e-124 448.4 551 51.4
ATR0691G247 Amborella trichopoda HOM05D004539 ORTHO05D005482 1.8e-123 447.2 560 49.8
EL10Ac1g00555 Beta vulgaris HOM05D004539 ORTHO05D005482 4.0e-123 446.0 540 54.8
Medtr4g022890 Medicago truncatula HOM05D004539 ORTHO05D005482 4.0e-123 446.0 558 54.3
PSO675G8916 Papaver somniferum HOM05D004539 ORTHO05D005482 4.0e-123 446.0 560 50.7
TPR.G5561 Trifolium pratense HOM05D004539 ORTHO05D005482 5.2e-123 445.7 554 52.0
PSO541G3108 Papaver somniferum HOM05D004539 ORTHO05D005482 6.8e-123 445.3 559 51.2
RcHm_v2.0_Chr6g0302141 Rosa chinensis HOM05D004539 ORTHO05D005482 1.3e-121 441.0 562 52.5
AUR62014430 Chenopodium quinoa HOM05D004539 ORTHO05D005482 4.9e-121 439.1 549 53.6
Ah.02g124950 Amaranthus hybridus HOM05D004539 ORTHO05D005482 3.2e-120 436.4 543 55.2
Migut.C00791 Erythranthe guttata HOM05D004539 ORTHO05D005482 3.2e-120 436.4 544 47.2
CAN.G851.13 Capsicum annuum HOM05D004539 ORTHO05D005482 7.8e-119 431.8 557 54.4
FvH4_2g39030 Fragaria vesca HOM05D004539 ORTHO05D005482 8.1e-116 421.8 555 51.9
FAN20G1687 Fragaria x ananassa HOM05D004539 ORTHO05D005482 8.1e-116 421.8 554 50.4
Aa31LG4G18400 Aethionema arabicum HOM05D004539 ORTHO05D005482 6.8e-115 418.7 543 50.5
FAN27G2077 Fragaria x ananassa HOM05D004539 ORTHO05D005482 8.9e-115 418.3 556 50.7
Lj4C792T1 Lonicera japonica HOM05D004539 ORTHO05D005482 7.5e-114 415.2 561 49.0
HanXRQChr09g0269371 Helianthus annuus HOM05D004539 ORTHO05D005482 1.7e-113 414.1 441 54.4
Carub.0005s1635 Capsella rubella HOM05D004539 ORTHO05D005482 2.2e-113 413.7 540 50.7
FAN15G3183 Fragaria x ananassa HOM05D004539 ORTHO05D005482 1.4e-112 411.0 552 50.7
MBI05_g04844_MAGBIO Magnolia biondii HOM05D004539 ORTHO05D005482 1.4e-112 411.0 728 42.0
Solyc04g081030.3 Solanum lycopersicum HOM05D004539 ORTHO05D005482 3.2e-112 409.8 557 53.1
Sp5g12110 Schrenkiella parvula HOM05D004539 ORTHO05D005482 5.4e-112 409.1 550 49.8
AT3G49990 Arabidopsis thaliana HOM05D004539 ORTHO05D005482 1.3e-110 404.4 542 48.9
Sopen04g034650 Solanum pennellii HOM05D004539 ORTHO05D005482 3.3e-109 399.8 485 53.2
unitig_578.g16661 Utricularia gibba HOM05D004539 ORTHO05D005482 5.6e-109 399.1 546 46.2
HPP92_016110 Vanilla planifolia HOM05D004539 ORTHO05D005482 4.7e-108 396.0 557 45.8
BcaC06g33116 Brassica carinata HOM05D004539 ORTHO05D005482 1.4e-107 394.4 549 49.5
AL5G30050 Arabidopsis lyrata HOM05D004539 ORTHO05D005482 3.1e-107 393.3 542 45.8
A03p47640 Brassica napus HOM05D004539 ORTHO05D005482 6.8e-107 392.1 545 50.8
Peaxi162Scf00287g00122 Petunia axillaris HOM05D004539 ORTHO05D005482 6.8e-107 392.1 558 51.1
BraA03t13876Z Brassica rapa HOM05D004539 ORTHO05D005482 1.5e-106 391.0 548 50.2
CDE12G0120 Ceratophyllum demersum HOM05D004539 ORTHO05D005482 3.4e-106 389.8 562 43.8
PGSC0003DMG400003712 Solanum tuberosum HOM05D004539 ORTHO05D005482 1.7e-105 387.5 539 48.6
Oeu030391.1 Olea europaea HOM05D004539 ORTHO05D005482 2.9e-105 386.7 546 46.9
CARHR159060 Cardamine hirsuta HOM05D004539 ORTHO05D005482 3.8e-105 386.3 547 49.2
BolC7t45082H Brassica oleracea HOM05D004539 ORTHO05D005482 3.5e-103 379.8 545 50.1
BcaC06g33276 Brassica carinata HOM05D004539 ORTHO05D005482 1.1e-101 374.8 552 49.6
C07p45610 Brassica napus HOM05D004539 ORTHO05D005482 1.1e-101 374.8 552 49.6
QL02p010726 Quercus lobata HOM05D004539 ORTHO05D005482 1.1e-101 374.8 303 68.0
SEGI_17236 Sequoiadendron giganteum HOM05D004539 ORTHO05D005482 4.6e-87 326.2 591 39.8
Zm00001eb018110 Zea mays HOM05D004539 ORTHO05D005482 1.1e-80 305.1 542 44.3
CAN.G851.15 Capsicum annuum HOM05D004539 ORTHO05D005482 1.9e-80 304.3 367 51.8
Cpa.g.sc1191.1 Carica papaya HOM05D004539 ORTHO05D005482 1.6e-79 301.2 306 58.2
Eucgr.E04075 Eucalyptus grandis HOM05D004539 ORTHO05D005482 1.0e-78 298.5 320 54.1
Os03g0372700 Oryza sativa ssp. japonica HOM05D004539 ORTHO05D005482 1.8e-78 297.7 538 43.5
Zm00001eb394100 Zea mays HOM05D004539 ORTHO05D005482 5.6e-77 292.7 543 43.6
Zm00001eb394110 Zea mays HOM05D004539 ORTHO05D005482 5.6e-77 292.7 543 43.6
QL02p010735 Quercus lobata HOM05D004539 ORTHO05D005482 4.9e-73 279.6 250 71.2
FvH4_7g07450 Fragaria vesca HOM05D004539 ORTHO05D005482 8.4e-73 278.9 409 49.1
FAN10G3704 Fragaria x ananassa HOM05D004539 ORTHO05D005482 1.3e-65 255.0 404 48.0
Pp3c26_3100 Physcomitrium patens HOM05D004539 ORTHO05D005482 3.3e-61 240.4 589 36.5
Mapoly0079s0035 Marchantia polymorpha HOM05D004539 ORTHO05D005482 5.9e-58 229.6 599 34.1
CDE04G1317 Ceratophyllum demersum HOM05D004539 ORTHO05D009003 2.2e-52 211.1 532 36.3
SEGI_09517 Sequoiadendron giganteum HOM05D004539 ORTHO05D005482 2.8e-52 210.7 423 37.8
Nitab4.5_0006718g0010 Nicotiana tabacum HOM05D004539 ORTHO05D005482 3.0e-46 190.7 192 54.2
FAN06G2453 Fragaria x ananassa HOM05D004539 ORTHO05D005482 1.1e-45 188.7 255 53.7
TAR628G0156 Trochodendron aralioides HOM05D004539 ORTHO05D005482 5.7e-45 186.4 180 56.1
SHI27908 Sapria himalayana HOM05D004539 ORTHO05D005482 2.8e-44 184.1 298 40.3
FAN22G0834 Fragaria x ananassa HOM05D004539 ORTHO05D005482 4.1e-43 180.3 296 43.2
FAN01G2597 Fragaria x ananassa HOM05D004539 ORTHO05D005482 2.2e-41 174.5 217 55.3
CBR_g23809 Chara braunii HOM05D004539 ORTHO05D005482 3.2e-40 170.6 721 30.1
FAN05G0730 Fragaria x ananassa HOM05D000664 ORTHO05D000491 2.8e-28 131.0 245 39.6
Zm00001eb328540 Zea mays HOM05D004539 ORTHO05D005482 6.3e-28 129.8 467 28.7
AagrBONN_evm.TU.Sc2ySwM_344.1857 Anthoceros agrestis HOM05D004539 ORTHO05D005482 1.4e-27 128.6 556 29.9
MELO3C004859.2 Cucumis melo HOM05D004539 ORTHO05D005482 2.0e-21 108.2 94 56.4
Os07g0634300 Oryza sativa ssp. japonica HOM05D004539 ORTHO05D005482 5.7e-21 106.7 225 39.1
Potri.002G028100 Populus trichocarpa HOM05D004539 ORTHO05D005482 1.1e-19 102.4 131 52.7
MELO3C014949.2 Cucumis melo HOM05D004539 ORTHO05D005482 7.8e-18 96.3 122 45.9
TAR369G0231 Trochodendron aralioides HOM05D004539 ORTHO05D005482 7.8e-18 96.3 98 50.0
Rhsim06G0017000 Rhododendron simsii HOM05D004539 ORTHO05D005482 5.6e-16 90.1 157 43.9
PRCOL_00001157 Prasinoderma coloniale HOM05D004539 ORTHO05D005482 7.3e-16 89.7 401 28.7
Rhsim06G0016800 Rhododendron simsii HOM05D004539 ORTHO05D005482 2.1e-15 88.2 196 38.3
SMO367G1003 Selaginella moellendorffii HOM05D004539 ORTHO05D005482 1.4e-14 85.5 175 34.3
AagrBONN_evm.TU.Sc2ySwM_344.3799 Anthoceros agrestis HOM05D004539 ORTHO05D005482 1.4e-11 75.5 504 27.0
AagrBONN_evm.TU.Sc2ySwM_344.1880 Anthoceros agrestis HOM05D004539 ORTHO05D005482 1.2e-10 72.4 226 32.3
BcaB05g23177 Brassica carinata HOM05D004539 ORTHO05D005482 1.2e-10 72.4 107 49.5
MELO3C034665.2 Cucumis melo HOM05D004539 ORTHO05D005482 2.0e-10 71.6 180 36.1
RcHm_v2.0_Chr1g0360321 Rosa chinensis HOM05D004539 ORTHO05D005482 7.3e-08 63.2 55 60.0


User provided reference genes

Program Settings