Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.08G059600 Carya illinoinensis HOM05D009764 ORTHO05D001632 2.7e-144 515.4 269 100.0
Haze_22534 Corylus avellana HOM05D009764 ORTHO05D001632 2.6e-59 233.0 266 50.8
CiPaw.07G158700 Carya illinoinensis HOM05D009764 ORTHO05D001632 3.3e-54 216.1 256 52.3
Cfa013859 Carpinus fangiana HOM05D009764 ORTHO05D001632 8.2e-53 211.5 267 49.1
CANSAT25G1766 Cannabis sativa HOM05D001749 ORTHO05D001632 3.4e-22 109.8 277 34.3
CSS0035839 Camellia sinensis var. sinensis HOM05D001749 ORTHO05D001632 9.2e-20 101.7 258 34.1
TAR628G1444 Trochodendron aralioides HOM05D001749 ORTHO05D001632 1.6e-19 100.9 262 32.8
MBI16_g30353_MAGBIO Magnolia biondii HOM05D001749 ORTHO05D001632 3.5e-19 99.8 257 32.3
Duzib093G0780 Durio zibethinus HOM05D009764 ORTHO05D012097 1.5e-17 94.4 304 31.6
Gorai.005G109100 Gossypium raimondii HOM05D009764 ORTHO05D012097 4.3e-17 92.8 280 33.9
Gohir.D02G095400 Gossypium hirsutum HOM05D009764 ORTHO05D012097 7.3e-17 92.0 280 33.9
Duzib041G0201 Durio zibethinus HOM05D009764 ORTHO05D012097 1.2e-16 91.3 295 31.5
Gohir.D05G260100 Gossypium hirsutum HOM05D009764 ORTHO05D012097 3.6e-16 89.7 284 32.4
Cpa.g.sc1139.1 Carica papaya HOM05D001749 ORTHO05D001632 6.2e-16 89.0 268 34.0
COL.COLO4_26261 Corchorus olitorius HOM05D009764 ORTHO05D012097 1.1e-15 88.2 285 33.0
Gorai.009G271900 Gossypium raimondii HOM05D009764 ORTHO05D012097 1.1e-15 88.2 285 31.6
MBI16_g08780_MAGBIO Magnolia biondii HOM05D001749 ORTHO05D001632 1.1e-15 88.2 259 31.3
TAR381G0807 Trochodendron aralioides HOM05D001749 ORTHO05D001632 1.1e-15 88.2 265 31.7
Nn5g29676 Nelumbo nucifera HOM05D001749 ORTHO05D001632 1.4e-15 87.8 262 31.7
Gohir.A05G258364 Gossypium hirsutum HOM05D009764 ORTHO05D012097 1.8e-15 87.4 296 30.7
Thecc.08G031300 Theobroma cacao HOM05D009764 ORTHO05D012097 1.8e-15 87.4 300 32.0
Rhsim08G0119900 Rhododendron simsii HOM05D001749 ORTHO05D001632 1.5e-14 84.3 258 33.3
COL.COLO4_22034 Corchorus olitorius HOM05D001749 ORTHO05D001632 2.6e-14 83.6 262 30.9
Gohir.A05G192100 Gossypium hirsutum HOM05D009764 ORTHO05D012097 3.4e-14 83.2 304 30.6
Manes.05G156600 Manihot esculenta HOM05D020394 ORTHO05D012097 3.4e-14 83.2 270 28.5
Nn1g04912 Nelumbo nucifera HOM05D001749 ORTHO05D001632 3.4e-14 83.2 264 31.1
RcHm_v2.0_Chr2g0100901 Rosa chinensis HOM05D001749 ORTHO05D001632 4.4e-14 82.8 278 31.7
CSS0042795 Camellia sinensis var. sinensis HOM05D001749 ORTHO05D001632 5.8e-14 82.4 262 32.8
MELO3C023313.2 Cucumis melo HOM05D001749 ORTHO05D001632 1.3e-13 81.3 255 28.6
Ciclev10004012m.g Citrus clementina HOM05D009764 ORTHO05D013404 2.9e-13 80.1 277 30.0
TAR625G0803 Trochodendron aralioides HOM05D001749 ORTHO05D001632 3.7e-13 79.7 261 35.2
Dinv40015 Davidia involucrata HOM05D001749 ORTHO05D001632 1.4e-12 77.8 253 29.2
CAN.G358.46 Capsicum annuum HOM05D001749 ORTHO05D001632 1.9e-12 77.4 233 30.9
ClCG11G004240 Citrullus lanatus HOM05D001749 ORTHO05D001632 2.4e-12 77.0 255 28.6
A09p44040 Brassica napus HOM05D001749 ORTHO05D001632 4.1e-12 76.3 256 29.7
BraA09t39862Z Brassica rapa HOM05D001749 ORTHO05D001632 4.1e-12 76.3 256 29.7
C08p26160 Brassica napus HOM05D001749 ORTHO05D001632 1.2e-11 74.7 266 28.2
Duzib147G1275 Durio zibethinus HOM05D001749 ORTHO05D001632 1.6e-11 74.3 259 29.3
Gohir.A12G063300 Gossypium hirsutum HOM05D001749 ORTHO05D001632 1.6e-11 74.3 259 32.0
Gohir.D12G063200 Gossypium hirsutum HOM05D001749 ORTHO05D001632 2.0e-11 73.9 259 30.5
BcaC07g39561 Brassica carinata HOM05D001749 ORTHO05D001632 3.5e-11 73.2 266 28.2
FAN28G1045 Fragaria x ananassa HOM05D001749 ORTHO05D001632 3.5e-11 73.2 275 30.5
Aa31LG1G14960 Aethionema arabicum HOM05D001749 ORTHO05D001632 4.6e-11 72.8 256 28.5
CARHR281310 Cardamine hirsuta HOM05D001749 ORTHO05D001632 4.6e-11 72.8 269 29.7
FAN19G1879 Fragaria x ananassa HOM05D001749 ORTHO05D001632 4.6e-11 72.8 260 30.0
Actinidia19200 Actinidia chinensis HOM05D001749 ORTHO05D001632 6.0e-11 72.4 254 31.1
Carub.0008s2808 Capsella rubella HOM05D001749 ORTHO05D001632 6.0e-11 72.4 256 28.9
FAN23G0952 Fragaria x ananassa HOM05D001749 ORTHO05D001632 6.0e-11 72.4 256 30.5
FAN26G1634 Fragaria x ananassa HOM05D001749 ORTHO05D001632 7.8e-11 72.0 254 29.1
CsaV3_2G014930 Cucumis sativus L. HOM05D001749 ORTHO05D001632 1.0e-10 71.6 252 29.0
Thhalv10010637m.g Eutrema salsugineum HOM05D001749 ORTHO05D001632 1.0e-10 71.6 270 29.3
Aa31LG4G19030 Aethionema arabicum HOM05D001749 ORTHO05D001632 1.3e-10 71.2 276 27.9
BcaB01g00565 Brassica carinata HOM05D001749 ORTHO05D001632 1.3e-10 71.2 258 31.4
Cfa004342 Carpinus fangiana HOM05D001749 ORTHO05D001632 1.3e-10 71.2 260 29.6
FvH4_1g12780 Fragaria vesca HOM05D001749 ORTHO05D001632 1.3e-10 71.2 277 29.2
Gorai.008G066400 Gossypium raimondii HOM05D001749 ORTHO05D001632 1.3e-10 71.2 259 30.1
Hma1.2p1_0469F.1_g159000 Hydrangea macrophylla HOM05D001749 ORTHO05D001632 1.7e-10 70.9 255 29.4
Manes.02G096700 Manihot esculenta HOM05D001749 ORTHO05D001632 1.7e-10 70.9 265 30.9
Sp5g11300 Schrenkiella parvula HOM05D001749 ORTHO05D001632 1.7e-10 70.9 268 29.1
Hma1.2p1_0224F.1_g094445 Hydrangea macrophylla HOM05D001749 ORTHO05D001632 2.3e-10 70.5 264 28.4
Hma1.2p1_2993F.1_g331370 Hydrangea macrophylla HOM05D001749 ORTHO05D001632 2.3e-10 70.5 264 28.4
BcaB05g23254 Brassica carinata HOM05D001749 ORTHO05D001632 3.0e-10 70.1 268 29.9
BcaB05g23255 Brassica carinata HOM05D001749 ORTHO05D001632 3.0e-10 70.1 268 29.9
Dinv36112 Davidia involucrata HOM05D003425 ORTHO05D003897 3.0e-10 70.1 248 29.8
Manes.11G085200 Manihot esculenta HOM05D001749 ORTHO05D001632 3.0e-10 70.1 262 28.2
BolC8t50232H Brassica oleracea HOM05D001749 ORTHO05D001632 3.9e-10 69.7 263 27.8
THA.LOC104826664 Tarenaya hassleriana HOM05D001749 ORTHO05D001632 3.9e-10 69.7 270 29.3
Gohir.A01G114500 Gossypium hirsutum HOM05D009764 ORTHO05D012097 5.0e-10 69.3 259 31.7
MBI10_g06727_MAGBIO Magnolia biondii HOM05D001749 ORTHO05D001632 6.6e-10 68.9 259 30.9
AT5G66440 Arabidopsis thaliana HOM05D001749 ORTHO05D001632 8.6e-10 68.6 265 26.8
CiPaw.01G045700 Carya illinoinensis HOM05D001749 ORTHO05D001632 1.5e-09 67.8 234 30.3
Duzib116G0736 Durio zibethinus HOM05D009764 ORTHO05D012097 1.5e-09 67.8 297 29.6
Nitab4.5_0003001g0010 Nicotiana tabacum HOM05D001749 ORTHO05D001632 1.5e-09 67.8 235 30.6
Sp2g30290 Schrenkiella parvula HOM05D001749 ORTHO05D001632 1.5e-09 67.8 257 28.8
Aqoxy5G01581 Aquilegia oxysepala HOM05D001749 ORTHO05D001632 1.9e-09 67.4 260 30.8
BcaC09g50057 Brassica carinata HOM05D001749 ORTHO05D001632 1.9e-09 67.4 264 28.0
C01p29520 Brassica napus HOM05D001749 ORTHO05D001632 1.9e-09 67.4 264 28.0
BolC1t02894H Brassica oleracea HOM05D001749 ORTHO05D001632 1.9e-09 67.4 264 28.0
DCAR_025960 Daucus carota HOM05D001749 ORTHO05D001632 1.9e-09 67.4 252 28.2
Duzib187G2007 Durio zibethinus HOM05D001749 ORTHO05D001632 1.9e-09 67.4 260 28.5
PGSC0003DMG400003523 Solanum tuberosum HOM05D001749 ORTHO05D001632 1.9e-09 67.4 235 28.5
THA.LOC104819200 Tarenaya hassleriana HOM05D001749 ORTHO05D001632 1.9e-09 67.4 256 30.1
Eucgr.F01877 Eucalyptus grandis HOM05D009764 ORTHO05D001632 2.5e-09 67.0 268 29.1
Gorai.009G200200 Gossypium raimondii HOM05D009764 ORTHO05D012097 2.5e-09 67.0 304 28.0
Sopen02g029630 Solanum pennellii HOM05D001749 ORTHO05D001632 2.5e-09 67.0 232 27.2
Atru.chr5.3055 Acer truncatum HOM05D001749 ORTHO05D001632 3.3e-09 66.6 255 28.2
AUR62014496 Chenopodium quinoa HOM05D001749 ORTHO05D001632 3.3e-09 66.6 255 29.8
AUR62038042 Chenopodium quinoa HOM05D001749 ORTHO05D001632 3.3e-09 66.6 244 29.9
Cc02_g17320 Coffea canephora HOM05D001749 ORTHO05D001632 3.3e-09 66.6 267 28.8
Gohir.D05G195300 Gossypium hirsutum HOM05D009764 ORTHO05D012097 3.3e-09 66.6 304 28.0
GSVIVG01018920001 Vitis vinifera HOM05D001749 ORTHO05D001632 3.3e-09 66.6 257 28.0
Manes.04G074762 Manihot esculenta HOM05D001749 ORTHO05D001632 4.3e-09 66.2 265 27.5
Manes.18G019775 Manihot esculenta HOM05D020394 ORTHO05D012097 4.3e-09 66.2 288 28.5
Gorai.002G126600 Gossypium raimondii HOM05D009764 ORTHO05D012097 7.3e-09 65.5 259 30.5
Sabra02G0026800 Salix brachista HOM05D020394 ORTHO05D012097 7.3e-09 65.5 278 30.2
MD02G1143400 Malus domestica HOM05D001749 ORTHO05D001632 9.5e-09 65.1 267 29.6
Gohir.D01G102900 Gossypium hirsutum HOM05D009764 ORTHO05D012097 1.2e-08 64.7 259 30.5
Potri.009G119000 Populus trichocarpa HOM05D001749 ORTHO05D001632 1.2e-08 64.7 262 27.1
Eucgr.I01283 Eucalyptus grandis HOM05D001749 ORTHO05D001632 1.6e-08 64.3 228 30.7
Sc02g0005800 Simmondsia chinensis HOM05D001749 ORTHO05D001632 1.6e-08 64.3 262 31.7
Dinv39444 Davidia involucrata HOM05D001749 ORTHO05D001632 2.1e-08 63.9 250 29.6
Thhalv10004766m.g Eutrema salsugineum HOM05D001749 ORTHO05D001632 2.1e-08 63.9 267 28.8
Gorai.007G201500 Gossypium raimondii HOM05D001749 ORTHO05D001632 2.1e-08 63.9 259 28.6
BraA01t02289Z Brassica rapa HOM05D001749 ORTHO05D001632 3.6e-08 63.2 265 27.9
Solyc02g084960.1 Solanum lycopersicum HOM05D001749 ORTHO05D001632 4.7e-08 62.8 232 27.2
A01p23800 Brassica napus HOM05D001749 ORTHO05D001632 6.2e-08 62.4 265 27.9
Nitab4.5_0001617g0020 Nicotiana tabacum HOM05D001749 ORTHO05D001632 6.2e-08 62.4 235 29.4
Thecc.01G031200 Theobroma cacao HOM05D001749 ORTHO05D001632 6.2e-08 62.4 250 29.6
Ah.05g177040 Amaranthus hybridus HOM05D001749 ORTHO05D001632 8.1e-08 62.0 257 28.0
Glyma.06G030300 Glycine max HOM05D016445 ORTHO05D019220 8.1e-08 62.0 252 30.2
ClCG08G014830 Citrullus lanatus HOM05D024629 ORTHO05D025095 1.1e-07 61.6 272 28.7
Oeu030425.2 Olea europaea HOM05D001749 ORTHO05D001632 1.1e-07 61.6 251 27.1
TWI36G0536 Tripterygium wilfordii HOM05D009764 ORTHO05D012097 1.1e-07 61.6 249 31.7
Aqoxy6G01165 Aquilegia oxysepala HOM05D001749 ORTHO05D001632 1.8e-07 60.8 258 27.9
Haze_02350 Corylus avellana HOM05D001749 ORTHO05D001632 2.3e-07 60.5 256 27.3
Gohir.D11G189200 Gossypium hirsutum HOM05D001749 ORTHO05D001632 2.3e-07 60.5 259 28.2
QL11p044367 Quercus lobata HOM05D001749 ORTHO05D001632 2.3e-07 60.5 256 26.2
AL8G45100 Arabidopsis lyrata HOM05D001749 ORTHO05D001632 3.1e-07 60.1 271 26.9
Ciclev10029211m.g Citrus clementina HOM05D001749 ORTHO05D001632 3.1e-07 60.1 258 26.7
Gorai.011G100900 Gossypium raimondii HOM05D001749 ORTHO05D001632 3.1e-07 60.1 261 29.1
Cpa.g.sc106.17 Carica papaya HOM05D001749 ORTHO05D001632 4.0e-07 59.7 258 28.3
Gohir.A11G182600 Gossypium hirsutum HOM05D001749 ORTHO05D001632 4.0e-07 59.7 261 28.7
Lj1g0002065 Lotus japonicus HOM05D016445 ORTHO05D019220 4.0e-07 59.7 290 27.9
Glyma.02G054400 Glycine max HOM05D001749 ORTHO05D001632 5.2e-07 59.3 255 29.4
Cfa005037 Carpinus fangiana HOM05D001749 ORTHO05D001632 6.8e-07 58.9 254 27.2
Gohir.D10G091900 Gossypium hirsutum HOM05D001749 ORTHO05D001632 6.8e-07 58.9 260 28.8
Potri.004G157300 Populus trichocarpa HOM05D001749 ORTHO05D001632 6.8e-07 58.9 262 26.0
MD05G1064000 Malus domestica HOM05D001749 ORTHO05D001632 8.9e-07 58.5 247 26.7
Nitab4.5_0011923g0020 Nicotiana tabacum HOM05D001749 ORTHO05D001632 1.2e-06 58.2 236 26.7
HanXRQChr09g0261391 Helianthus annuus HOM05D001749 ORTHO05D001632 1.5e-06 57.8 264 28.0
Oeu041631.1 Olea europaea HOM05D001749 ORTHO05D001632 1.5e-06 57.8 254 26.4
Eucgr.F01591 Eucalyptus grandis HOM05D009764 ORTHO05D001632 2.0e-06 57.4 280 31.8
Prupe.8G094100 Prunus persica HOM05D001749 ORTHO05D001632 2.0e-06 57.4 251 25.9
MSTRG.25190 Avicennia marina HOM05D001749 ORTHO05D001632 2.6e-06 57.0 267 28.1
BolC7t45123H Brassica oleracea HOM05D001749 ORTHO05D001632 2.6e-06 57.0 267 27.3
PSO541G5621 Papaver somniferum HOM05D001749 ORTHO05D001632 2.6e-06 57.0 267 27.3
C07p46070 Brassica napus HOM05D001749 ORTHO05D001632 3.4e-06 56.6 263 28.9
MD10G1072700 Malus domestica HOM05D001749 ORTHO05D001632 3.4e-06 56.6 246 26.4
Potri.005G229800 Populus trichocarpa HOM05D020394 ORTHO05D012097 3.4e-06 56.6 295 30.5
HanXRQChr11g0325491 Helianthus annuus HOM05D001749 ORTHO05D001632 4.4e-06 56.2 261 29.5
Potri.005G120300 Populus trichocarpa HOM05D001749 ORTHO05D001632 4.4e-06 56.2 270 27.0
VMungo0251G1101 Vigna mungo HOM05D001749 ORTHO05D001632 7.5e-06 55.5 250 28.8


User provided reference genes

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