Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.08G058900 Carya illinoinensis HOM05D005760 ORTHO05D007113 0.0e+00 2822.7 1457 100.0
Cfa013846 Carpinus fangiana HOM05D005760 ORTHO05D007113 0.0e+00 2297.3 1458 81.4
Haze_22520 Corylus avellana HOM05D005760 ORTHO05D007113 0.0e+00 2288.8 1491 79.7
QL02p033685 Quercus lobata HOM05D005760 ORTHO05D007113 0.0e+00 2149.8 1463 77.4
Prupe.8G057200 Prunus persica HOM05D005760 ORTHO05D007113 0.0e+00 1956.8 1462 70.1
Dinv41715 Davidia involucrata HOM05D005760 ORTHO05D007113 0.0e+00 1941.0 1483 68.6
Thecc.08G184000 Theobroma cacao HOM05D005760 ORTHO05D007113 0.0e+00 1899.0 1454 67.9
Ciclev10000028m.g Citrus clementina HOM05D005760 ORTHO05D007113 0.0e+00 1897.5 1461 68.7
MD05G1041500 Malus domestica HOM05D005760 ORTHO05D007113 0.0e+00 1897.1 1459 69.6
MD10G1047900 Malus domestica HOM05D005760 ORTHO05D007113 0.0e+00 1894.0 1460 69.0
Manes.18G101200 Manihot esculenta HOM05D005760 ORTHO05D007113 0.0e+00 1888.6 1458 68.2
COL.COLO4_04233 Corchorus olitorius HOM05D005760 ORTHO05D007113 0.0e+00 1879.8 1462 67.3
TAR628G1581 Trochodendron aralioides HOM05D005760 ORTHO05D007113 0.0e+00 1861.3 1478 66.2
Atru.chr13.1758 Acer truncatum HOM05D005760 ORTHO05D007113 0.0e+00 1855.5 1458 67.8
Sabra19G0094600 Salix brachista HOM05D005760 ORTHO05D007113 0.0e+00 1854.7 1455 66.9
Glyma.02G158100 Glycine max HOM05D005760 ORTHO05D007113 0.0e+00 1850.5 1467 67.0
Actinidia23335 Actinidia chinensis HOM05D005760 ORTHO05D007113 0.0e+00 1848.9 1476 65.2
CANSAT78G0610 Cannabis sativa HOM05D005760 ORTHO05D007113 0.0e+00 1835.5 1458 66.3
Gohir.D05G253200 Gossypium hirsutum HOM05D005760 ORTHO05D007113 0.0e+00 1825.8 1460 65.8
Gorai.009G263800 Gossypium raimondii HOM05D005760 ORTHO05D007113 0.0e+00 1822.0 1460 65.7
Lj5g0008525 Lotus japonicus HOM05D005760 ORTHO05D007113 0.0e+00 1817.4 1462 65.4
Phvul.007G245600 Phaseolus vulgaris HOM05D005760 ORTHO05D007113 0.0e+00 1813.1 1470 65.8
TWI34G1956 Tripterygium wilfordii HOM05D005760 ORTHO05D007113 0.0e+00 1809.3 1455 66.7
Psat6g094080 Pisum sativum HOM05D005760 ORTHO05D007113 0.0e+00 1798.9 1465 65.3
Ca_11749_v3 Cicer arietinum L. HOM05D005760 ORTHO05D007113 0.0e+00 1795.8 1465 65.3
RcHm_v2.0_Chr6g0272031 Rosa chinensis HOM05D005760 ORTHO05D007113 0.0e+00 1791.9 1467 66.3
ClCG11G008140 Citrullus lanatus HOM05D005760 ORTHO05D007113 0.0e+00 1791.5 1457 65.1
arahy.Tifrunner.gnm1.ann1.H1JXTH Arachis hypogaea HOM05D005760 ORTHO05D007113 0.0e+00 1778.1 1500 63.8
arahy.Tifrunner.gnm1.ann1.BNJ0D6 Arachis hypogaea HOM05D005760 ORTHO05D007113 0.0e+00 1776.1 1498 64.2
GSVIVG01034473001 Vitis vinifera HOM05D005760 ORTHO05D007113 0.0e+00 1773.4 1459 64.9
CsaV3_2G033490 Cucumis sativus L. HOM05D005760 ORTHO05D007113 0.0e+00 1763.4 1456 64.1
Medtr1g050670 Medicago truncatula HOM05D005760 ORTHO05D007113 0.0e+00 1754.2 1453 64.3
TPR.G22709 Trifolium pratense HOM05D005760 ORTHO05D007113 0.0e+00 1753.4 1534 62.0
Nn1g08372 Nelumbo nucifera HOM05D005760 ORTHO05D007113 0.0e+00 1750.3 1473 62.8
Rhsim06G0094000 Rhododendron simsii HOM05D005760 ORTHO05D007113 0.0e+00 1730.3 1473 62.9
Duzib116G0663 Durio zibethinus HOM05D005760 ORTHO05D007113 0.0e+00 1728.4 1461 62.2
PGR102G0553 Punica granatum HOM05D005760 ORTHO05D007113 0.0e+00 1704.9 1459 62.7
Hma1.2p1_0004F.1_g004045 Hydrangea macrophylla HOM05D005760 ORTHO05D007113 0.0e+00 1681.0 1503 63.2
FvH4_2g11773 Fragaria vesca HOM05D005760 ORTHO05D007113 0.0e+00 1639.8 1472 62.0
FAN15G1969 Fragaria x ananassa HOM05D005760 ORTHO05D007113 0.0e+00 1625.5 1475 62.2
FAN24G1577 Fragaria x ananassa HOM05D005760 ORTHO05D007113 0.0e+00 1624.4 1497 61.3
MSTRG.25441 Avicennia marina HOM05D005760 ORTHO05D007113 0.0e+00 1617.1 1476 59.6
MELO3C008121.2 Cucumis melo HOM05D005760 ORTHO05D007113 0.0e+00 1603.2 1466 59.9
Potri.019G083100 Populus trichocarpa HOM05D005760 ORTHO05D007113 0.0e+00 1602.4 1270 66.7
vmacro12489 Vaccinium macrocarpon HOM05D005760 ORTHO05D007113 0.0e+00 1585.1 1532 58.0
SalBow7G4130 Salvia bowleyana HOM05D005760 ORTHO05D007113 0.0e+00 1581.2 1473 58.2
Aqoxy6G00127 Aquilegia oxysepala HOM05D005760 ORTHO05D007113 0.0e+00 1572.4 1492 58.6
Hund27088 Selenicereus undatus HOM05D005760 ORTHO05D007113 0.0e+00 1571.2 1485 58.2
Sc23g0001270 Simmondsia chinensis HOM05D005760 ORTHO05D007113 0.0e+00 1565.1 1485 58.5
CAN.G199.9 Capsicum annuum HOM05D005760 ORTHO05D007113 0.0e+00 1564.3 1467 58.2
Sopen06g023840 Solanum pennellii HOM05D005760 ORTHO05D007113 0.0e+00 1563.1 1466 59.5
THA.LOC104806788 Tarenaya hassleriana HOM05D005760 ORTHO05D007113 0.0e+00 1561.6 1449 59.6
Nitab4.5_0000303g0150 Nicotiana tabacum HOM05D005760 ORTHO05D007113 0.0e+00 1557.7 1501 58.8
CSS0014231 Camellia sinensis var. sinensis HOM05D005760 ORTHO05D007113 0.0e+00 1549.3 1257 66.0
VMungo0720G1167 Vigna mungo HOM05D005760 ORTHO05D007113 0.0e+00 1544.3 1273 64.7
Lj4C503G3 Lonicera japonica HOM05D005760 ORTHO05D007113 0.0e+00 1542.3 1370 62.0
Cc10_g10700 Coffea canephora HOM05D005760 ORTHO05D007113 0.0e+00 1535.4 1385 60.9
Migut.C01256 Erythranthe guttata HOM05D005760 ORTHO05D007113 0.0e+00 1531.9 1462 57.0
EL10Ac1g00088 Beta vulgaris HOM05D005760 ORTHO05D007113 0.0e+00 1523.1 1466 57.2
AUR62004640 Chenopodium quinoa HOM05D005760 ORTHO05D007113 0.0e+00 1522.7 1464 58.2
DCAR_001048 Daucus carota HOM05D005760 ORTHO05D007113 0.0e+00 1515.4 1471 57.4
PSO170G3854 Papaver somniferum HOM05D005760 ORTHO05D007113 0.0e+00 1510.7 1490 57.1
PSO782G3241 Papaver somniferum HOM05D005760 ORTHO05D007113 0.0e+00 1492.6 1484 56.8
Sp1g30370 Schrenkiella parvula HOM05D005760 ORTHO05D007113 0.0e+00 1478.8 1474 56.6
Thhalv10001809m.g Eutrema salsugineum HOM05D005760 ORTHO05D007113 0.0e+00 1463.4 1468 56.0
Aa31LG6G8840 Aethionema arabicum HOM05D005760 ORTHO05D007113 0.0e+00 1462.6 1460 56.2
AUR62022696 Chenopodium quinoa HOM05D005760 ORTHO05D007113 0.0e+00 1460.7 1464 56.6
AT1G35660 Arabidopsis thaliana HOM05D005760 ORTHO05D007113 0.0e+00 1453.3 1461 56.3
AL1G50540 Arabidopsis lyrata HOM05D005760 ORTHO05D007113 0.0e+00 1449.5 1459 56.0
CARHR034440 Cardamine hirsuta HOM05D005760 ORTHO05D007113 0.0e+00 1441.0 1467 56.4
Carub.0001s3325 Capsella rubella HOM05D005760 ORTHO05D007113 0.0e+00 1440.2 1460 56.5
SGA_v2.0_scaffold118G32485 Striga asiatica HOM05D005760 ORTHO05D007113 0.0e+00 1434.5 1424 56.0
Ah.05g178160 Amaranthus hybridus HOM05D005760 ORTHO05D007113 0.0e+00 1415.2 1471 55.1
BcaB07g33624 Brassica carinata HOM05D005760 ORTHO05D007113 0.0e+00 1396.3 1466 54.7
Lsat_1_v5_gn_1_10440 Lactuca sativa HOM05D005760 ORTHO05D007113 0.0e+00 1387.9 1458 54.1
BcaC08g43328 Brassica carinata HOM05D005760 ORTHO05D007113 0.0e+00 1373.6 1467 53.9
BolC6t35790H Brassica oleracea HOM05D005760 ORTHO05D007113 0.0e+00 1372.5 1470 53.7
A06p02320 Brassica napus HOM05D005760 ORTHO05D007113 0.0e+00 1371.7 1470 54.0
BraA06t23439Z Brassica rapa HOM05D005760 ORTHO05D007113 0.0e+00 1371.3 1470 54.0
C06p06840 Brassica napus HOM05D005760 ORTHO05D007113 0.0e+00 1367.1 1470 53.5
ATR0003G012 Amborella trichopoda HOM05D005760 ORTHO05D007113 0.0e+00 1343.9 1392 53.2
Nitab4.5_0002500g0010 Nicotiana tabacum HOM05D005760 ORTHO05D007113 0.0e+00 1343.2 1317 58.2
ECA152G0004 Erigeron canadensis HOM05D005760 ORTHO05D007113 0.0e+00 1322.0 1465 53.0
Zm00001eb146280 Zea mays HOM05D005760 ORTHO05D007113 0.0e+00 1306.6 1462 51.0
Os01g0873800 Oryza sativa ssp. japonica HOM05D005760 ORTHO05D007113 0.0e+00 1303.5 1473 50.4
HanXRQChr04g0107521 Helianthus annuus HOM05D005760 ORTHO05D007113 0.0e+00 1302.3 1451 51.6
Gohir.A05G250600 Gossypium hirsutum HOM05D005760 ORTHO05D007113 0.0e+00 1298.9 1114 63.3
Sed0013995 Sechium edule HOM05D005760 ORTHO05D007113 0.0e+00 1261.9 1109 61.7
Hma1.2p1_0004F.1_g004050 Hydrangea macrophylla HOM05D005760 ORTHO05D007113 0.0e+00 1247.6 1090 63.5
Oeu000547.3 Olea europaea HOM05D005760 ORTHO05D007113 0.0e+00 1224.9 1175 58.1
SpUn0216_0010 Schrenkiella parvula HOM05D005760 ORTHO05D007113 0.0e+00 1203.3 1322 53.9
Solyc06g065360.3 Solanum lycopersicum HOM05D005760 ORTHO05D007113 0.0e+00 1192.2 1151 58.4
Lj4C496G3 Lonicera japonica HOM05D005760 ORTHO05D007113 0.0e+00 1160.2 910 66.9
Lalb_Chr03g0036151 Lupinus albus HOM05D005760 ORTHO05D007113 0.0e+00 1117.8 1052 60.3
SEGI_03904 Sequoiadendron giganteum HOM05D005760 ORTHO05D007113 0.0e+00 1100.9 1354 48.9
SHI09011 Sapria himalayana HOM05D005760 ORTHO05D007113 1.8e-287 993.4 1342 45.2
Eucgr.F04123 Eucalyptus grandis HOM05D005760 ORTHO05D007113 4.2e-252 875.9 1016 49.9
Peaxi162Scf00268g01123 Petunia axillaris HOM05D005760 ORTHO05D007113 1.0e-250 871.3 952 53.7
Mapoly0036s0148 Marchantia polymorpha HOM05D005760 ORTHO05D007113 7.4e-249 865.1 1524 39.2
Pp3c15_6380 Physcomitrium patens HOM05D005760 ORTHO05D007113 5.0e-245 852.4 1540 39.0
Pp3c15_6360 Physcomitrium patens HOM05D005760 ORTHO05D007113 6.1e-243 845.5 1502 39.5
AagrBONN_evm.TU.Sc2ySwM_117.2253 Anthoceros agrestis HOM05D005760 ORTHO05D007113 3.7e-232 809.7 1540 35.8
unitig_0.g276 Utricularia gibba HOM05D005760 ORTHO05D007113 7.3e-212 742.3 830 51.4
Peaxi162Scf00268g01128 Petunia axillaris HOM05D005760 ORTHO05D007113 9.5e-212 741.9 519 71.1
QL02p033674 Quercus lobata HOM05D005760 ORTHO05D007113 1.6e-190 671.4 677 56.9
Lalb_Chr03g0036141 Lupinus albus HOM05D005760 ORTHO05D007113 8.4e-176 622.5 429 72.3
CBR_g40969 Chara braunii HOM05D005760 ORTHO05D007113 6.2e-163 579.7 1934 29.7
CDE08G1571 Ceratophyllum demersum HOM05D005760 ORTHO05D007113 3.2e-151 540.8 870 43.1
Cpa.g.sc66.38 Carica papaya HOM05D005760 ORTHO05D007113 1.2e-150 538.9 581 55.4
Lj4A496G12 Lonicera japonica HOM05D005760 ORTHO05D007113 6.7e-141 506.5 450 63.3
SEGI_16135 Sequoiadendron giganteum HOM05D005760 ORTHO05D007113 2.2e-128 464.9 441 59.6
unitig_0.g275 Utricularia gibba HOM05D005760 ORTHO05D007113 1.4e-125 455.7 593 46.9
Carub.0001s0936 Capsella rubella HOM05D005760 ORTHO05D007113 1.0e-117 429.5 1359 29.2
QL02p033652 Quercus lobata HOM05D005760 ORTHO05D007113 1.0e-104 386.3 798 38.2
Cpa.g.sc66.39 Carica papaya HOM05D005760 ORTHO05D007113 3.3e-95 354.8 399 51.4
Gohir.A05G250551 Gossypium hirsutum HOM05D005760 ORTHO05D007113 2.7e-89 335.1 217 74.2
BolC6t35788H Brassica oleracea HOM05D005760 ORTHO05D007113 3.3e-87 328.2 347 52.4
C06p06800 Brassica napus HOM05D005760 ORTHO05D007113 2.2e-75 288.9 267 57.3
CDE08G0174 Ceratophyllum demersum HOM05D003774 ORTHO05D009174 1.0e-64 253.4 260 55.4
AL1G47130 Arabidopsis lyrata HOM05D005760 ORTHO05D007113 1.1e-63 250.0 1159 26.3
FAN02G3326 Fragaria x ananassa HOM05D005760 ORTHO05D007113 3.0e-40 172.2 165 57.6
Cc10_g10690 Coffea canephora HOM05D005760 ORTHO05D007113 4.2e-26 125.2 88 65.9
SHI09012 Sapria himalayana HOM05D005760 ORTHO05D007113 4.6e-25 121.7 93 64.5
Hma1.2p1_0004F.1_g004040 Hydrangea macrophylla HOM05D005760 ORTHO05D007113 7.9e-25 120.9 83 69.9
VMungo0720G0756 Vigna mungo HOM05D005760 ORTHO05D007113 1.8e-24 119.8 94 60.6
Cpa.g.sc66.41 Carica papaya HOM05D005760 ORTHO05D007113 1.5e-20 106.7 84 64.3
Hma1.2p1_0004F.1_g004060 Hydrangea macrophylla HOM05D005760 ORTHO05D007113 5.0e-19 101.7 103 56.3
ATR1101G015 Amborella trichopoda HOM05D005760 ORTHO05D007113 1.6e-17 96.7 67 67.2
HPP92_025156 Vanilla planifolia HOM05D005760 ORTHO05D007113 2.7e-17 95.9 67 67.2
CDE08G0048 Ceratophyllum demersum HOM05D005760 ORTHO05D007113 1.0e-16 94.0 65 64.6
ATR0003G024 Amborella trichopoda HOM05D005760 ORTHO05D007113 3.9e-16 92.0 85 54.1
Lj4C503T2 Lonicera japonica HOM05D005760 ORTHO05D007113 5.3e-13 81.6 104 51.0
Cpa.g.sc66.40 Carica papaya HOM05D005760 ORTHO05D007113 7.2e-10 71.2 48 68.8
SEGI_08751 Sequoiadendron giganteum HOM05D005760 ORTHO05D007113 3.3e-07 62.4 72 48.6
SHI09014 Sapria himalayana HOM05D005760 ORTHO05D007113 4.4e-07 62.0 42 69.0
Zm00001eb324780 Zea mays HOM05D005760 ORTHO05D000367 3.7e-06 58.9 71 42.3


User provided reference genes

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