Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.08G053400 Carya illinoinensis HOM05D008077 ORTHO05D010221 2.3e-90 335.5 167 100.0
Cfa013722 Carpinus fangiana HOM05D008077 ORTHO05D010221 2.1e-70 269.2 167 77.2
Haze_22366 Corylus avellana HOM05D008077 ORTHO05D010221 1.3e-69 266.5 167 76.6
QL09p016211 Quercus lobata HOM05D008077 ORTHO05D010221 3.0e-61 238.8 166 71.1
Atru.chr13.887 Acer truncatum HOM05D008077 ORTHO05D010221 3.4e-57 225.3 165 66.1
Thecc.08G082700 Theobroma cacao HOM05D008077 ORTHO05D010221 4.2e-55 218.4 165 61.2
Hma1.2p1_4204F.1_g338450 Hydrangea macrophylla HOM05D008077 ORTHO05D010221 2.7e-54 215.7 163 62.6
TWI56G0834 Tripterygium wilfordii HOM05D008077 ORTHO05D010221 5.1e-53 211.5 165 60.6
GSVIVG01009281001 Vitis vinifera HOM05D008077 ORTHO05D010221 1.9e-52 209.5 163 60.7
Duzib116G0694 Durio zibethinus HOM05D008077 ORTHO05D010221 9.0e-50 200.7 169 58.6
Dinv39194 Davidia involucrata HOM05D008077 ORTHO05D010221 1.5e-49 199.9 163 57.7
Manes.18G051200 Manihot esculenta HOM05D008077 ORTHO05D010221 2.0e-49 199.5 165 57.6
TAR376G0563 Trochodendron aralioides HOM05D008077 ORTHO05D010221 3.8e-48 195.3 163 57.1
Eucgr.F02208 Eucalyptus grandis HOM05D008077 ORTHO05D010221 6.5e-48 194.5 163 59.5
Potri.005G149500 Populus trichocarpa HOM05D008077 ORTHO05D010221 3.2e-47 192.2 159 59.1
Sabra05G0118800 Salix brachista HOM05D008077 ORTHO05D010221 9.3e-47 190.7 159 57.9
arahy.Tifrunner.gnm1.ann1.PWM57A Arachis hypogaea HOM05D008077 ORTHO05D010221 2.1e-46 189.5 164 56.7
Dinv44921 Davidia involucrata HOM05D008077 ORTHO05D010221 2.1e-46 189.5 163 55.2
CSS0006446 Camellia sinensis var. sinensis HOM05D008077 ORTHO05D010221 2.7e-46 189.1 163 55.8
Phvul.001G032000 Phaseolus vulgaris HOM05D008077 ORTHO05D010221 2.7e-46 189.1 165 56.4
CSS0048473 Camellia sinensis var. sinensis HOM05D008077 ORTHO05D010221 3.5e-46 188.7 162 56.2
arahy.Tifrunner.gnm1.ann1.JS0EE0 Arachis hypogaea HOM05D008077 ORTHO05D010221 1.0e-45 187.2 164 56.1
Lalb_Chr14g0367971 Lupinus albus HOM05D008077 ORTHO05D010221 1.0e-45 187.2 161 55.9
RcHm_v2.0_Chr6g0310221 Rosa chinensis HOM05D008077 ORTHO05D010221 2.3e-45 186.0 163 56.4
Glyma.17G232225 Glycine max HOM05D008077 ORTHO05D010221 6.7e-45 184.5 165 57.0
Prupe.1G417600 Prunus persica HOM05D008077 ORTHO05D010221 8.7e-45 184.1 168 54.2
VMungo0647G0255 Vigna mungo HOM05D008077 ORTHO05D010221 8.7e-45 184.1 163 55.8
Ca_06992_v3 Cicer arietinum L. HOM05D008077 ORTHO05D010221 1.1e-44 183.7 166 57.2
Glyma.14G090800 Glycine max HOM05D008077 ORTHO05D010221 1.9e-44 183.0 157 58.0
CsaV3_4G035360 Cucumis sativus L. HOM05D008077 ORTHO05D010221 3.3e-44 182.2 166 51.8
ClCG05G017630 Citrullus lanatus HOM05D008077 ORTHO05D010221 4.3e-44 181.8 166 52.4
CANSAT25G0587 Cannabis sativa HOM05D008077 ORTHO05D010221 5.7e-44 181.4 162 53.7
Gohir.D01G112200 Gossypium hirsutum HOM05D008077 ORTHO05D010221 5.7e-44 181.4 163 54.0
Nn6g34549 Nelumbo nucifera HOM05D008077 ORTHO05D010221 2.2e-43 179.5 156 53.8
Gorai.002G137100 Gossypium raimondii HOM05D008077 ORTHO05D010221 2.8e-43 179.1 163 53.4
TPR.G13063 Trifolium pratense HOM05D008077 ORTHO05D010221 4.8e-43 178.3 172 53.5
AUR62039341 Chenopodium quinoa HOM05D008077 ORTHO05D010221 6.3e-43 177.9 161 50.3
Medtr1g017160 Medicago truncatula HOM05D008077 ORTHO05D010221 8.2e-43 177.6 165 54.5
Ciclev10002390m.g Citrus clementina HOM05D008077 ORTHO05D010221 4.1e-42 175.3 156 55.8
Actinidia19284 Actinidia chinensis HOM05D008077 ORTHO05D010221 5.3e-42 174.9 163 52.1
PSO541G6554 Papaver somniferum HOM05D008077 ORTHO05D010221 6.9e-42 174.5 161 50.9
MBI16_g09811_MAGBIO Magnolia biondii HOM05D008077 ORTHO05D010221 9.0e-42 174.1 158 53.8
FvH4_2g32450 Fragaria vesca HOM05D008077 ORTHO05D010221 1.2e-41 173.7 163 53.4
FAN20G1346 Fragaria x ananassa HOM05D008077 ORTHO05D010221 1.2e-41 173.7 163 54.6
FAN24G1375 Fragaria x ananassa HOM05D008077 ORTHO05D010221 1.2e-41 173.7 163 53.4
AUR62034975 Chenopodium quinoa HOM05D008077 ORTHO05D010221 3.4e-41 172.2 161 49.1
Gohir.A01G124500 Gossypium hirsutum HOM05D008077 ORTHO05D010221 5.9e-41 171.4 167 52.1
MD08G1076300 Malus domestica HOM05D008077 ORTHO05D010221 5.9e-41 171.4 170 53.5
PGR031G0263 Punica granatum HOM05D008077 ORTHO05D010221 5.0e-40 168.3 161 50.9
Cc10_g07800 Coffea canephora HOM05D008077 ORTHO05D010221 6.5e-40 167.9 157 52.2
EL10Ac1g02339 Beta vulgaris HOM05D008077 ORTHO05D010221 1.4e-39 166.8 155 51.0
Sc02g0008240 Simmondsia chinensis HOM05D008077 ORTHO05D010221 1.9e-39 166.4 160 48.8
FAN27G3028 Fragaria x ananassa HOM05D008077 ORTHO05D010221 1.6e-38 163.3 163 52.8
Actinidia10235 Actinidia chinensis HOM05D008077 ORTHO05D010221 6.1e-38 161.4 161 49.1
MSTRG.22201 Avicennia marina HOM05D008077 ORTHO05D010221 7.9e-38 161.0 160 45.6
Oeu048561.1 Olea europaea HOM05D008077 ORTHO05D010221 1.4e-37 160.2 150 49.3
Psat6g018560 Pisum sativum HOM05D008077 ORTHO05D010221 2.3e-37 159.5 150 52.7
Hund05263 Selenicereus undatus HOM05D008077 ORTHO05D010221 8.8e-37 157.5 160 46.9
PSO675G3170 Papaver somniferum HOM05D008077 ORTHO05D010221 4.3e-36 155.2 165 46.1
FAN15G0649 Fragaria x ananassa HOM05D008077 ORTHO05D010221 6.3e-35 151.4 163 49.1
CDE06G2465 Ceratophyllum demersum HOM05D008077 ORTHO05D010221 6.9e-34 147.9 158 50.6
Lj5g0022198 Lotus japonicus HOM05D008077 ORTHO05D010221 4.5e-33 145.2 111 64.0
Sed0028055 Sechium edule HOM05D008077 ORTHO05D010221 1.2e-30 137.1 128 51.6
THA.LOC104806984 Tarenaya hassleriana HOM05D008077 ORTHO05D010221 1.2e-30 137.1 154 42.9
COL.COLO4_28429 Corchorus olitorius HOM05D008077 ORTHO05D010221 1.8e-29 133.3 110 56.4
MELO3C016846.2 Cucumis melo HOM05D008077 ORTHO05D010221 2.8e-27 125.9 126 47.6
Migut.N02805 Erythranthe guttata HOM05D008077 ORTHO05D010221 2.6e-25 119.4 162 38.9
TPR.G13160 Trifolium pratense HOM05D008077 ORTHO05D010221 9.7e-20 100.9 166 39.8
unitig_578.g16165 Utricularia gibba HOM05D008077 ORTHO05D010221 1.7e-19 100.1 96 44.8
HPP92_006033 Vanilla planifolia HOM05D008077 ORTHO05D010221 6.3e-19 98.2 112 41.1
SGA_v2.0_scaffold152G36867 Striga asiatica HOM05D008077 ORTHO05D010221 1.6e-17 93.6 105 42.9
SEGI_41084 Sequoiadendron giganteum HOM05D007054 ORTHO05D008888 9.4e-15 84.3 158 34.2
ATR0767G176 Amborella trichopoda HOM05D007054 ORTHO05D008888 8.0e-14 81.3 169 30.8
GSVIVG01031807001 Vitis vinifera HOM05D007054 ORTHO05D008888 8.0e-14 81.3 171 28.7
Gohir.A12G026500 Gossypium hirsutum HOM05D007054 ORTHO05D008888 4.0e-13 79.0 165 31.5
Ciclev10029145m.g Citrus clementina HOM05D007054 ORTHO05D008888 5.2e-13 78.6 169 28.4
Gohir.D12G026100 Gossypium hirsutum HOM05D007054 ORTHO05D008888 6.7e-13 78.2 165 31.5
Gorai.008G026400 Gossypium raimondii HOM05D007054 ORTHO05D008888 6.7e-13 78.2 165 31.5
PGR142G2758 Punica granatum HOM05D007054 ORTHO05D008888 1.5e-12 77.0 158 29.1
MD15G1063400 Malus domestica HOM05D008077 ORTHO05D010221 2.0e-12 76.6 105 43.8
Lj9C361T14 Lonicera japonica HOM05D007054 ORTHO05D008888 2.6e-12 76.3 146 30.1
Oeu021925.1 Olea europaea HOM05D007054 ORTHO05D008888 4.4e-12 75.5 167 27.5
Atru.chr5.2831 Acer truncatum HOM05D007054 ORTHO05D008888 1.3e-11 73.9 168 28.0
CSS0047307 Camellia sinensis var. sinensis HOM05D007054 ORTHO05D008888 1.3e-11 73.9 169 28.4
Dinv42118 Davidia involucrata HOM05D007054 ORTHO05D008888 1.7e-11 73.6 170 28.2
Duzib132G1179 Durio zibethinus HOM05D007054 ORTHO05D008888 2.2e-11 73.2 168 29.8
CANSAT25G2549 Cannabis sativa HOM05D007054 ORTHO05D008888 3.7e-11 72.4 146 29.5
Prupe.8G115700 Prunus persica HOM05D007054 ORTHO05D008888 6.3e-11 71.6 168 26.8
QL11p038609 Quercus lobata HOM05D007054 ORTHO05D008888 6.3e-11 71.6 145 29.7
Ca_12472_v3 Cicer arietinum L. HOM05D007054 ORTHO05D008888 1.8e-10 70.1 170 27.1
Hma1.2p1_1543F.1_g289790 Hydrangea macrophylla HOM05D007054 ORTHO05D008888 1.8e-10 70.1 149 30.9
Phvul.003G012100 Phaseolus vulgaris HOM05D007054 ORTHO05D008888 1.8e-10 70.1 168 28.0
Sc26g0004390 Simmondsia chinensis HOM05D007054 ORTHO05D008888 2.4e-10 69.7 177 26.6
CsaV3_7G008860 Cucumis sativus L. HOM05D007054 ORTHO05D008888 3.1e-10 69.3 146 27.4
MELO3C018427.2 Cucumis melo HOM05D007054 ORTHO05D008888 5.3e-10 68.6 146 26.7
RcHm_v2.0_Chr6g0259351 Rosa chinensis HOM05D007054 ORTHO05D008888 5.3e-10 68.6 169 24.9
Lj2g0019135 Lotus japonicus HOM05D007054 ORTHO05D008888 7.0e-10 68.2 169 25.4
arahy.Tifrunner.gnm1.ann1.M7JB84 Arachis hypogaea HOM05D007054 ORTHO05D008888 1.2e-09 67.4 167 25.1
MD00G1050600 Malus domestica HOM05D007054 ORTHO05D008888 1.6e-09 67.0 170 26.5
arahy.Tifrunner.gnm1.ann1.LAP5IF Arachis hypogaea HOM05D007054 ORTHO05D008888 2.0e-09 66.6 146 26.7
CDE02G0602 Ceratophyllum demersum HOM05D007054 ORTHO05D008888 2.7e-09 66.2 140 29.3
CARHR039530 Cardamine hirsuta HOM05D007054 ORTHO05D008888 3.5e-09 65.9 150 27.3
TPR.G11147 Trifolium pratense HOM05D007054 ORTHO05D008888 3.5e-09 65.9 156 26.3
Lalb_Chr01g0013331 Lupinus albus HOM05D007054 ORTHO05D008888 5.9e-09 65.1 169 27.2
SalBow3G3466 Salvia bowleyana HOM05D007054 ORTHO05D008888 7.7e-09 64.7 170 24.7
AL1G56860 Arabidopsis lyrata HOM05D007054 ORTHO05D008888 1.3e-08 63.9 152 27.6
Pp3c23_6910 Physcomitrium patens HOM05D007054 ORTHO05D008888 1.3e-08 63.9 140 29.3
Carub.0001s3870 Capsella rubella HOM05D007054 ORTHO05D008888 1.7e-08 63.5 150 26.0
Thhalv10011746m.g Eutrema salsugineum HOM05D007054 ORTHO05D008888 2.2e-08 63.2 150 27.3
Potri.004G145600 Populus trichocarpa HOM05D007054 ORTHO05D008888 2.2e-08 63.2 163 25.8
FAN15G2151 Fragaria x ananassa HOM05D007054 ORTHO05D008888 3.8e-08 62.4 167 24.0
Sabra04G0096600 Salix brachista HOM05D007054 ORTHO05D008888 5.0e-08 62.0 163 25.8
FvH4_2g07010 Fragaria vesca HOM05D007054 ORTHO05D008888 6.5e-08 61.6 158 24.1
Medtr1g034050 Medicago truncatula HOM05D007054 ORTHO05D008888 6.5e-08 61.6 169 24.3
AT1G49510 Arabidopsis thaliana HOM05D007054 ORTHO05D008888 8.5e-08 61.2 149 26.2
Aa31LG8G5880 Aethionema arabicum HOM05D007054 ORTHO05D008888 1.1e-07 60.8 159 24.5
BcaC05g27487 Brassica carinata HOM05D007054 ORTHO05D008888 4.2e-07 58.9 133 26.3
C05p34530 Brassica napus HOM05D007054 ORTHO05D008888 4.2e-07 58.9 133 26.3


User provided reference genes

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