Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.08G052300 Carya illinoinensis HOM05D005317 ORTHO05D005146 2.7e-85 318.5 152 100.0
COL.COLO4_28461 Corchorus olitorius HOM05D005317 ORTHO05D005146 9.1e-33 144.1 147 54.4
Manes.05G183500 Manihot esculenta HOM05D005317 ORTHO05D005146 5.0e-31 138.3 147 54.4
Thecc.08G084700 Theobroma cacao HOM05D005317 ORTHO05D005146 4.2e-30 135.2 144 54.2
TAR628G1097 Trochodendron aralioides HOM05D005317 ORTHO05D005146 9.4e-30 134.0 143 55.9
Haze_22391 Corylus avellana HOM05D005317 ORTHO05D005146 2.3e-28 129.4 177 46.9
TAR381G0867 Trochodendron aralioides HOM05D005317 ORTHO05D005146 1.2e-27 127.1 138 55.1
Sabra14G0007800 Salix brachista HOM05D005317 ORTHO05D005146 2.6e-27 125.9 152 48.7
TAR376G0587 Trochodendron aralioides HOM05D005317 ORTHO05D005146 3.4e-27 125.6 146 51.4
Potri.014G013000 Populus trichocarpa HOM05D005317 ORTHO05D005146 6.3e-26 121.3 148 48.6
Cfa013739 Carpinus fangiana HOM05D005317 ORTHO05D005146 1.8e-25 119.8 145 49.0
TPR.G13020 Trifolium pratense HOM05D005317 ORTHO05D005146 1.6e-24 116.7 147 49.7
Medtr1g017500 Medicago truncatula HOM05D005317 ORTHO05D005146 2.7e-24 115.9 146 51.4
Gohir.A06G025600 Gossypium hirsutum HOM05D005317 ORTHO05D005146 4.5e-24 115.2 145 46.2
Rhsim07G0217500 Rhododendron simsii HOM05D005317 ORTHO05D005146 1.0e-23 114.0 151 47.7
Gorai.010G027300 Gossypium raimondii HOM05D005317 ORTHO05D005146 2.2e-23 112.8 145 46.2
Oeu047228.1 Olea europaea HOM05D005317 ORTHO05D005146 2.2e-23 112.8 150 46.7
Gohir.D06G022700 Gossypium hirsutum HOM05D005317 ORTHO05D005146 6.5e-23 111.3 145 45.5
SalBow4G3082 Salvia bowleyana HOM05D005317 ORTHO05D005146 8.5e-23 110.9 152 47.4
VMungo0647G1960 Vigna mungo HOM05D005317 ORTHO05D005146 1.1e-22 110.5 142 47.2
Eucgr.F00095 Eucalyptus grandis HOM05D005317 ORTHO05D005146 1.5e-22 110.2 149 44.3
GSVIVG01009301001 Vitis vinifera HOM05D005317 ORTHO05D005146 2.5e-22 109.4 144 44.4
Cc10_g07630 Coffea canephora HOM05D005317 ORTHO05D005146 3.2e-22 109.0 160 43.8
Phvul.001G030800 Phaseolus vulgaris HOM05D005317 ORTHO05D005146 3.2e-22 109.0 142 47.9
Aqoxy6G02455 Aquilegia oxysepala HOM05D005317 ORTHO05D005146 7.2e-22 107.8 139 48.2
Oeu053645.1 Olea europaea HOM05D005317 ORTHO05D005146 7.2e-22 107.8 157 45.2
Potri.007G007000 Populus trichocarpa HOM05D005317 ORTHO05D005146 7.2e-22 107.8 155 46.5
CiPaw.07G172100 Carya illinoinensis HOM05D005317 ORTHO05D005146 1.2e-21 107.1 155 46.5
Thecc.01G076000 Theobroma cacao HOM05D005317 ORTHO05D005146 2.8e-21 105.9 145 47.6
Actinidia29632 Actinidia chinensis HOM05D005317 ORTHO05D005146 6.1e-21 104.8 116 51.7
Prupe.1G419300 Prunus persica HOM05D005317 ORTHO05D005146 6.1e-21 104.8 139 46.0
Nn5g30662 Nelumbo nucifera HOM05D005317 ORTHO05D005146 3.0e-20 102.4 144 44.4
Glyma.06G048700 Glycine max HOM05D005317 ORTHO05D005146 4.0e-20 102.1 139 46.0
COL.COLO4_28460 Corchorus olitorius HOM05D005317 ORTHO05D005146 6.8e-20 101.3 148 43.2
Glyma.14G089084 Glycine max HOM05D005317 ORTHO05D005146 6.8e-20 101.3 148 46.6
Cpa.g.c31093.6 Carica papaya HOM05D005317 ORTHO05D005146 8.8e-20 100.9 151 43.7
Lalb_Chr24g0399511 Lupinus albus HOM05D005317 ORTHO05D005146 1.2e-19 100.5 126 50.0
Actinidia10221 Actinidia chinensis HOM05D005317 ORTHO05D005146 3.4e-19 99.0 110 52.7
Hma1.2p1_1139F.1_g260880 Hydrangea macrophylla HOM05D005317 ORTHO05D005146 7.5e-19 97.8 146 42.5
Gohir.D05G215300 Gossypium hirsutum HOM05D005317 ORTHO05D005146 9.8e-19 97.4 144 42.4
Psat6g017280 Pisum sativum HOM05D005317 ORTHO05D005146 1.3e-18 97.1 135 48.1
VMungo1309G2313 Vigna mungo HOM05D005317 ORTHO05D005146 1.7e-18 96.7 134 44.8
Oeu014288.1 Olea europaea HOM05D005317 ORTHO05D005146 2.2e-18 96.3 157 41.4
DCAR_020064 Daucus carota HOM05D005317 ORTHO05D005146 2.8e-18 95.9 139 41.7
Lj5g0002019 Lotus japonicus HOM05D005317 ORTHO05D005146 2.8e-18 95.9 140 49.3
Glyma.17G232900 Glycine max HOM05D005317 ORTHO05D005146 6.3e-18 94.7 150 44.7
Sopen04g031150 Solanum pennellii HOM05D005317 ORTHO05D005146 8.3e-18 94.4 151 41.7
QL06p038960 Quercus lobata HOM05D005317 ORTHO05D005146 1.1e-17 94.0 154 42.2
Sabra07G0005300 Salix brachista HOM05D005317 ORTHO05D005146 1.1e-17 94.0 149 40.9
Aqoxy6G02509 Aquilegia oxysepala HOM05D005317 ORTHO05D005146 1.4e-17 93.6 109 51.4
CSS0048752 Camellia sinensis var. sinensis HOM05D005317 ORTHO05D005146 1.4e-17 93.6 136 43.4
Haze_15027 Corylus avellana HOM05D005317 ORTHO05D005146 1.4e-17 93.6 146 41.8
Ciclev10029376m.g Citrus clementina HOM05D005317 ORTHO05D005146 1.8e-17 93.2 173 35.3
Thecc.08G084600 Theobroma cacao HOM05D005317 ORTHO05D005146 1.8e-17 93.2 150 38.0
Ciclev10026641m.g Citrus clementina HOM05D005317 ORTHO05D005146 7.0e-17 91.3 156 42.9
Lj4C75G10 Lonicera japonica HOM05D002048 ORTHO05D002146 9.2e-17 90.9 107 50.5
Duzib187G1956 Durio zibethinus HOM05D005317 ORTHO05D005146 1.2e-16 90.5 155 39.4
Gohir.A05G212000 Gossypium hirsutum HOM05D005317 ORTHO05D005146 1.2e-16 90.5 145 39.3
Prupe.6G217200 Prunus persica HOM05D005317 ORTHO05D005146 2.7e-16 89.4 157 40.1
Migut.C00473 Erythranthe guttata HOM05D005317 ORTHO05D005146 7.8e-16 87.8 160 39.4
Gohir.A01G123600 Gossypium hirsutum HOM05D005317 ORTHO05D005146 2.3e-15 86.3 155 38.1
Gohir.D12G076800 Gossypium hirsutum HOM05D005317 ORTHO05D005146 3.8e-15 85.5 146 41.8
Gorai.008G085600 Gossypium raimondii HOM05D005317 ORTHO05D005146 3.8e-15 85.5 146 41.8
Manes.13G109200 Manihot esculenta HOM05D005317 ORTHO05D005146 5.0e-15 85.1 155 38.7
Dinv26957 Davidia involucrata HOM05D005317 ORTHO05D005146 6.6e-15 84.7 121 46.3
Manes.05G183600 Manihot esculenta HOM05D005317 ORTHO05D005146 8.6e-15 84.3 154 37.0
Gorai.009G222000 Gossypium raimondii HOM05D005317 ORTHO05D005146 1.1e-14 84.0 137 38.7
FAN23G2069 Fragaria x ananassa HOM05D005317 ORTHO05D005146 1.5e-14 83.6 173 36.4
Gohir.A12G080100 Gossypium hirsutum HOM05D005317 ORTHO05D005146 1.5e-14 83.6 152 38.8
Atru.chr13.870 Acer truncatum HOM05D005317 ORTHO05D005146 1.9e-14 83.2 148 39.2
RcHm_v2.0_Chr2g0108721 Rosa chinensis HOM05D005317 ORTHO05D005146 2.5e-14 82.8 172 34.9
Gorai.002G136200 Gossypium raimondii HOM05D005317 ORTHO05D005146 4.3e-14 82.0 145 39.3
Gohir.A02G149800 Gossypium hirsutum HOM05D005317 ORTHO05D005146 5.6e-14 81.6 148 41.2
FAN26G0581 Fragaria x ananassa HOM05D005317 ORTHO05D005146 7.3e-14 81.3 172 35.5
Cfa004386 Carpinus fangiana HOM05D005317 ORTHO05D005146 9.5e-14 80.9 144 38.2
DCAR_009867 Daucus carota HOM05D005317 ORTHO05D005146 9.5e-14 80.9 164 36.6
Dinv23042 Davidia involucrata HOM05D005317 ORTHO05D005146 1.2e-13 80.5 135 41.5
FAN19G1325 Fragaria x ananassa HOM05D005317 ORTHO05D005146 1.2e-13 80.5 174 33.9
FAN28G2997 Fragaria x ananassa HOM05D005317 ORTHO05D005146 1.2e-13 80.5 173 35.3
CiPaw.01G002200 Carya illinoinensis HOM05D005317 ORTHO05D005146 1.6e-13 80.1 161 39.8
FvH4_1g18210 Fragaria vesca HOM05D005317 ORTHO05D005146 1.6e-13 80.1 174 33.9
Lj4g0026806 Lotus japonicus HOM05D005317 ORTHO05D005146 1.6e-13 80.1 155 36.1
Actinidia16411 Actinidia chinensis HOM05D005317 ORTHO05D005146 3.6e-13 79.0 140 37.1
Gohir.D01G111432 Gossypium hirsutum HOM05D005317 ORTHO05D005146 6.1e-13 78.2 146 38.4
Gohir.A06G025700 Gossypium hirsutum HOM05D005317 ORTHO05D005146 1.0e-12 77.4 136 39.0
Phvul.003G233000 Phaseolus vulgaris HOM05D005317 ORTHO05D005146 1.0e-12 77.4 143 37.8
Gorai.010G027400 Gossypium raimondii HOM05D005317 ORTHO05D005146 1.4e-12 77.0 138 39.1
Medtr4g097480 Medicago truncatula HOM05D005317 ORTHO05D005146 1.4e-12 77.0 144 34.7
Gohir.D06G022800 Gossypium hirsutum HOM05D005317 ORTHO05D005146 1.8e-12 76.6 138 38.4
Gohir.D03G030600 Gossypium hirsutum HOM05D005317 ORTHO05D005146 3.0e-12 75.9 149 40.9
Eucgr.H02331 Eucalyptus grandis HOM05D005317 ORTHO05D005146 4.0e-12 75.5 145 36.6
MSTRG.25022 Avicennia marina HOM05D005317 ORTHO05D005146 6.8e-12 74.7 153 37.9
Gorai.003G032200 Gossypium raimondii HOM05D005317 ORTHO05D005146 1.5e-11 73.6 146 39.7
Psat0ss26165g0240 Pisum sativum HOM05D005317 ORTHO05D005146 2.6e-11 72.8 149 36.2
CiPaw.07G172000 Carya illinoinensis HOM05D005317 ORTHO05D005146 3.4e-11 72.4 142 38.0
COL.COLO4_11612 Corchorus olitorius HOM05D005317 ORTHO05D005146 3.4e-11 72.4 158 38.0
Sc24g0002340 Simmondsia chinensis HOM05D005317 ORTHO05D005146 4.4e-11 72.0 136 33.8
TPR.G3735 Trifolium pratense HOM05D005317 ORTHO05D005146 7.5e-11 71.2 146 34.9
Cfa013738 Carpinus fangiana HOM05D005317 ORTHO05D005146 9.8e-11 70.9 152 39.5
Glyma.05G108400 Glycine max HOM05D005317 ORTHO05D005146 9.8e-11 70.9 157 36.3
VMungo0251G0145 Vigna mungo HOM05D005317 ORTHO05D005146 9.8e-11 70.9 140 36.4
ATR0739G163 Amborella trichopoda HOM05D005317 ORTHO05D005146 1.3e-10 70.5 160 35.0
FAN15G0380 Fragaria x ananassa HOM05D030376 ORTHO05D005146 4.9e-10 68.6 168 32.7
Atru.chr3.1057 Acer truncatum HOM05D005317 ORTHO05D005146 8.3e-10 67.8 165 32.7
Gorai.002G136100 Gossypium raimondii HOM05D005317 ORTHO05D005146 8.3e-10 67.8 131 41.2
PGSC0003DMG400004968 Solanum tuberosum HOM05D005317 ORTHO05D005146 8.3e-10 67.8 151 35.1
FAN27G2237 Fragaria x ananassa HOM05D030376 ORTHO05D005146 1.1e-09 67.4 168 33.9
ClCG01G017790 Citrullus lanatus HOM05D005317 ORTHO05D005146 1.8e-09 66.6 144 34.0
MSTRG.23654 Avicennia marina HOM05D005317 ORTHO05D005146 3.2e-09 65.9 148 32.4
Haze_22390 Corylus avellana HOM05D000071 ORTHO05D000029 3.2e-09 65.9 147 34.7
Gohir.A11G212400 Gossypium hirsutum HOM05D005317 ORTHO05D005146 4.1e-09 65.5 145 34.5
MBI16_g41241_MAGBIO Magnolia biondii HOM05D005317 ORTHO05D005146 7.0e-09 64.7 127 35.4
Gohir.D01G111366 Gossypium hirsutum HOM05D005317 ORTHO05D005146 9.2e-09 64.3 82 53.7
Oeu021452.1 Olea europaea HOM05D005317 ORTHO05D005146 9.2e-09 64.3 142 34.5
SalBow3G0220 Salvia bowleyana HOM05D005317 ORTHO05D005146 9.2e-09 64.3 144 35.4
Lalb_Chr09g0335521 Lupinus albus HOM05D005317 ORTHO05D005146 1.2e-08 63.9 153 34.0
arahy.Tifrunner.gnm1.ann1.G8H34X Arachis hypogaea HOM05D005317 ORTHO05D005146 2.0e-08 63.2 107 45.8
CDE07G0499 Ceratophyllum demersum HOM05D000271 ORTHO05D009467 2.0e-08 63.2 146 31.5
FAN20G0770 Fragaria x ananassa HOM05D030376 ORTHO05D005146 2.7e-08 62.8 166 33.1
Glyma.17G158600 Glycine max HOM05D005317 ORTHO05D005146 2.7e-08 62.8 157 34.4
Carub.0001s0960 Capsella rubella HOM05D011270 ORTHO05D012905 3.5e-08 62.4 145 33.1
AUR62037856 Chenopodium quinoa HOM05D051035 ORTHO05D005146 3.5e-08 62.4 140 34.3
CARHR010290 Cardamine hirsuta HOM05D011270 ORTHO05D012905 5.9e-08 61.6 125 37.6
BcaC05g24800 Brassica carinata HOM05D011270 ORTHO05D012905 7.8e-08 61.2 99 39.4
Gohir.A01G123550 Gossypium hirsutum HOM05D005317 ORTHO05D005146 7.8e-08 61.2 131 39.7
arahy.Tifrunner.gnm1.ann1.K9IMQL Arachis hypogaea HOM05D005317 ORTHO05D005146 1.3e-07 60.5 105 42.9
Actinidia11964 Actinidia chinensis HOM05D031334 ORTHO05D026410 2.3e-07 59.7 101 41.6
Ah.02g129000 Amaranthus hybridus HOM05D005317 ORTHO05D005146 2.3e-07 59.7 87 39.1
A08p34120 Brassica napus HOM05D011270 ORTHO05D012905 2.3e-07 59.7 145 33.1
CDE04G2604 Ceratophyllum demersum HOM05D000375 ORTHO05D000240 2.3e-07 59.7 161 28.0
unitig_749.g13883 Utricularia gibba HOM05D005317 ORTHO05D005146 2.3e-07 59.7 122 34.4
C08p13500 Brassica napus HOM05D011270 ORTHO05D012905 3.0e-07 59.3 141 34.0
Potri.014G012900 Populus trichocarpa HOM05D005317 ORTHO05D005146 3.0e-07 59.3 164 32.3
BcaC07g38553 Brassica carinata HOM05D011270 ORTHO05D012905 3.9e-07 58.9 146 32.2
Gohir.D05G215433 Gossypium hirsutum HOM05D005317 ORTHO05D005146 3.9e-07 58.9 131 35.9
Sed0021979 Sechium edule HOM05D005317 ORTHO05D005146 3.9e-07 58.9 154 33.8
BcaC07g38545 Brassica carinata HOM05D011270 ORTHO05D012905 5.0e-07 58.5 142 33.1
BolC8t48985H Brassica oleracea HOM05D011270 ORTHO05D012905 5.0e-07 58.5 142 33.1
Sc03g0002520 Simmondsia chinensis HOM05D005317 ORTHO05D005146 5.0e-07 58.5 87 36.8
Phvul.009G074100 Phaseolus vulgaris HOM05D014755 ORTHO05D012905 6.6e-07 58.2 128 32.0
AUR62041096 Chenopodium quinoa HOM05D051035 ORTHO05D005146 8.6e-07 57.8 119 36.1
unitig_37.g13114 Utricularia gibba HOM05D005317 ORTHO05D005146 8.6e-07 57.8 117 34.2
Gorai.007G226200 Gossypium raimondii HOM05D005317 ORTHO05D005146 1.5e-06 57.0 154 30.5
EL10Ac6g13373 Beta vulgaris HOM05D005317 ORTHO05D005146 1.9e-06 56.6 92 42.4
Ciclev10027255m.g Citrus clementina HOM05D005317 ORTHO05D005146 1.9e-06 56.6 146 32.9
BcaC07g38551 Brassica carinata HOM05D011270 ORTHO05D012905 2.5e-06 56.2 142 32.4
Sed0025721 Sechium edule HOM05D005317 ORTHO05D005146 2.5e-06 56.2 97 39.2
SGA_v2.0_scaffold238G43910 Striga asiatica HOM05D005317 ORTHO05D005146 2.5e-06 56.2 141 35.5
BolC8t48976H Brassica oleracea HOM05D011270 ORTHO05D012905 3.3e-06 55.8 142 32.4
BraA08t35324Z Brassica rapa HOM05D011270 ORTHO05D012905 4.3e-06 55.5 146 30.1
MBI16_g06081_MAGBIO Magnolia biondii HOM05D005317 ORTHO05D005146 5.6e-06 55.1 87 40.2


User provided reference genes

Program Settings