Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.08G040800 Carya illinoinensis HOM05D002866 ORTHO05D008706 1.1e-215 753.1 388 100.0
CiPaw.07G185900 Carya illinoinensis HOM05D002866 ORTHO05D008706 3.0e-181 638.6 388 85.3
QL09p028565 Quercus lobata HOM05D002866 ORTHO05D008706 1.3e-176 623.2 387 83.7
Cfa013555 Carpinus fangiana HOM05D002866 ORTHO05D008706 1.2e-169 600.1 388 80.4
Haze_22176 Corylus avellana HOM05D002866 ORTHO05D008706 2.6e-164 582.4 388 78.9
CANSAT56G0863 Cannabis sativa HOM05D002866 ORTHO05D008706 2.9e-160 568.9 389 76.6
TWI39G0340 Tripterygium wilfordii HOM05D002866 ORTHO05D008706 2.9e-160 568.9 389 76.9
Potri.004G233400 Populus trichocarpa HOM05D002866 ORTHO05D008706 1.1e-159 567.0 389 75.8
Duzib205G1859 Durio zibethinus HOM05D002866 ORTHO05D008706 4.2e-159 565.1 389 76.6
RcHm_v2.0_Chr1g0373901 Rosa chinensis HOM05D002866 ORTHO05D008706 4.2e-159 565.1 389 75.8
TAR636G1476 Trochodendron aralioides HOM05D002866 ORTHO05D008706 4.7e-158 561.6 392 76.3
Gohir.D12G199800 Gossypium hirsutum HOM05D002866 ORTHO05D008706 1.0e-157 560.5 389 76.1
TAR629G0107 Trochodendron aralioides HOM05D002866 ORTHO05D008706 1.4e-157 560.1 393 76.3
Gohir.A12G197200 Gossypium hirsutum HOM05D002866 ORTHO05D008706 1.8e-157 559.7 389 75.8
CSS0049284 Camellia sinensis var. sinensis HOM05D002866 ORTHO05D008706 2.3e-157 559.3 390 76.2
CSS0019630 Camellia sinensis var. sinensis HOM05D002866 ORTHO05D008706 3.0e-157 558.9 391 76.0
COL.COLO4_14065 Corchorus olitorius HOM05D002866 ORTHO05D008706 3.0e-157 558.9 389 74.8
VMungo1127G0600 Vigna mungo HOM05D002866 ORTHO05D008706 6.7e-157 557.8 390 75.1
HanXRQChr05g0139511 Helianthus annuus HOM05D002866 ORTHO05D008706 2.6e-156 555.8 390 74.9
Glyma.12G241300 Glycine max HOM05D002866 ORTHO05D008706 3.3e-156 555.4 390 76.2
Glyma.09G001400 Glycine max HOM05D002866 ORTHO05D008706 4.4e-156 555.1 390 75.9
Thecc.03G150500 Theobroma cacao HOM05D002866 ORTHO05D008706 5.7e-156 554.7 387 75.7
Eucgr.K00134 Eucalyptus grandis HOM05D002866 ORTHO05D008706 1.7e-155 553.1 388 75.0
Dinv16857 Davidia involucrata HOM05D002866 ORTHO05D000096 2.8e-155 552.4 389 75.6
Atru.chr1.857 Acer truncatum HOM05D002866 ORTHO05D008706 4.8e-155 551.6 389 75.6
Psat7g229240 Pisum sativum HOM05D002866 ORTHO05D008706 8.2e-155 550.8 389 74.3
CsaV3_4G004120 Cucumis sativus L. HOM05D002866 ORTHO05D008706 3.1e-154 548.9 391 74.4
Ca_19791_v3 Cicer arietinum L. HOM05D002866 ORTHO05D008706 2.7e-153 545.8 389 74.3
MELO3C017654.2 Cucumis melo HOM05D002866 ORTHO05D008706 3.5e-153 545.4 391 73.7
Gorai.008G215000 Gossypium raimondii HOM05D002866 ORTHO05D008706 3.5e-153 545.4 417 71.0
MD07G1250400 Malus domestica HOM05D002866 ORTHO05D008706 4.5e-153 545.0 389 74.3
Lj3g0011743 Lotus japonicus HOM05D002866 ORTHO05D008706 5.9e-153 544.7 390 74.6
arahy.Tifrunner.gnm1.ann1.E5894Z Arachis hypogaea HOM05D002866 ORTHO05D008706 7.7e-153 544.3 419 69.5
arahy.Tifrunner.gnm1.ann1.J95VX3 Arachis hypogaea HOM05D002866 ORTHO05D008706 7.7e-153 544.3 413 70.2
Medtr4g029530 Medicago truncatula HOM05D002866 ORTHO05D008706 1.7e-152 543.1 389 73.3
MD01G1178200 Malus domestica HOM05D002866 ORTHO05D008706 2.2e-152 542.7 384 73.7
Ciclev10005197m.g Citrus clementina HOM05D002866 ORTHO05D008706 2.9e-152 542.3 388 74.2
Lsat_1_v5_gn_8_9940 Lactuca sativa HOM05D002866 ORTHO05D008706 2.9e-152 542.3 389 72.8
Sed0026429 Sechium edule HOM05D002866 ORTHO05D008706 2.9e-152 542.3 392 73.0
ClCG07G016890 Citrullus lanatus HOM05D002866 ORTHO05D008706 8.5e-152 540.8 410 71.5
TPR.G4977 Trifolium pratense HOM05D002866 ORTHO05D008706 8.5e-152 540.8 389 73.8
MSTRG.135 Avicennia marina HOM05D002866 ORTHO05D008706 1.5e-151 540.0 389 72.0
Oeu021695.1 Olea europaea HOM05D002866 ORTHO05D008706 1.9e-151 539.7 389 72.8
Lalb_Chr01g0008171 Lupinus albus HOM05D002866 ORTHO05D008706 5.5e-151 538.1 390 72.8
FvH4_7g27080 Fragaria vesca HOM05D002866 ORTHO05D008706 4.7e-150 535.0 389 72.0
Aqoxy3G02809 Aquilegia oxysepala HOM05D002866 ORTHO05D008706 4.0e-149 531.9 394 71.8
FAN06G0893 Fragaria x ananassa HOM05D002866 ORTHO05D008706 6.8e-149 531.2 399 70.7
THA.LOC104819416 Tarenaya hassleriana HOM05D002866 ORTHO05D008706 8.8e-149 530.8 388 70.4
Nitab4.5_0002346g0030 Nicotiana tabacum HOM05D002866 ORTHO05D008706 2.0e-148 529.6 389 71.2
Rhsim03G0163000 Rhododendron simsii HOM05D002866 ORTHO05D008706 2.6e-148 529.3 442 66.1
Solyc03g093430.3 Solanum lycopersicum HOM05D002866 ORTHO05D008706 2.6e-148 529.3 388 70.9
Dinv06581 Davidia involucrata HOM05D002866 ORTHO05D008706 2.2e-147 526.2 359 77.7
FAN10G3812 Fragaria x ananassa HOM05D002866 ORTHO05D008706 3.7e-147 525.4 389 71.5
Nn6g33864 Nelumbo nucifera HOM05D002866 ORTHO05D008706 4.8e-147 525.0 393 71.0
CAN.G485.11 Capsicum annuum HOM05D002866 ORTHO05D008706 1.1e-146 523.9 390 70.5
Lalb_Chr03g0033851 Lupinus albus HOM05D002866 ORTHO05D008706 1.8e-146 523.1 390 71.0
Sabra01G0178500 Salix brachista HOM05D002866 ORTHO05D008706 1.8e-146 523.1 444 65.3
PGSC0003DMG400018852 Solanum tuberosum HOM05D002866 ORTHO05D008706 3.1e-146 522.3 389 70.4
BraA03t13839Z Brassica rapa HOM05D002866 ORTHO05D008706 5.4e-146 521.5 388 70.4
vmacro22347 Vaccinium macrocarpon HOM05D002866 ORTHO05D008706 5.4e-146 521.5 387 72.1
AL8G38230 Arabidopsis lyrata HOM05D002866 ORTHO05D008706 9.1e-146 520.8 388 70.6
Thhalv10005440m.g Eutrema salsugineum HOM05D002866 ORTHO05D008706 9.1e-146 520.8 388 70.1
A03p47120 Brassica napus HOM05D002866 ORTHO05D008929 1.6e-145 520.0 386 70.5
Migut.F00510 Erythranthe guttata HOM05D002866 ORTHO05D008706 2.0e-145 519.6 387 70.3
Cc02_g04580 Coffea canephora HOM05D002866 ORTHO05D008706 3.5e-145 518.8 388 70.6
CARHR275300 Cardamine hirsuta HOM05D002866 ORTHO05D008706 4.5e-145 518.5 388 70.1
Peaxi162Scf00271g00837 Petunia axillaris HOM05D002866 ORTHO05D008706 4.5e-145 518.5 388 70.1
C07p45230 Brassica napus HOM05D002866 ORTHO05D008929 6.6e-144 514.6 384 70.1
Carub.0008s2222 Capsella rubella HOM05D002866 ORTHO05D008706 6.6e-144 514.6 388 69.3
Cpa.g.sc13.273 Carica papaya HOM05D002866 ORTHO05D008706 6.6e-144 514.6 354 76.0
Sp2g24730 Schrenkiella parvula HOM05D002866 ORTHO05D008706 1.1e-143 513.8 388 70.1
Manes.06G132500 Manihot esculenta HOM05D002866 ORTHO05D008706 1.5e-143 513.5 395 69.6
A09p07320 Brassica napus HOM05D002866 ORTHO05D008706 7.2e-143 511.1 389 69.9
BcaNung01432 Brassica carinata HOM05D002866 ORTHO05D008706 1.2e-142 510.4 388 68.8
SGA_v2.0_scaffold60G20804 Striga asiatica HOM05D006112 ORTHO05D000096 1.2e-142 510.4 414 66.7
BraA09t36387Z Brassica rapa HOM05D002866 ORTHO05D008706 3.6e-142 508.8 389 69.7
Lj1A977T67 Lonicera japonica HOM05D002866 ORTHO05D008706 3.6e-142 508.8 442 65.2
BolC7t45046H Brassica oleracea HOM05D002866 ORTHO05D008929 4.7e-142 508.4 389 69.2
BcaC04g23445 Brassica carinata HOM05D002866 ORTHO05D008706 6.1e-142 508.1 389 69.4
PGR142G0955 Punica granatum HOM05D002866 ORTHO05D008706 8.0e-142 507.7 388 70.4
Nitab4.5_0001267g0040 Nicotiana tabacum HOM05D002866 ORTHO05D008706 5.2e-141 505.0 389 68.6
C09p08260 Brassica napus HOM05D002866 ORTHO05D008706 6.8e-141 504.6 389 68.6
BolC9t53736H Brassica oleracea HOM05D002866 ORTHO05D008706 6.8e-141 504.6 389 68.6
FAN01G3021 Fragaria x ananassa HOM05D002866 ORTHO05D008706 3.7e-139 498.8 420 65.5
Prupe.2G274000 Prunus persica HOM05D002866 ORTHO05D008706 4.1e-138 495.4 331 77.0
unitig_0.g267 Utricularia gibba HOM05D002866 ORTHO05D008706 4.1e-138 495.4 388 66.5
MBI04_g34101_MAGBIO Magnolia biondii HOM05D002866 ORTHO05D008706 7.8e-137 491.1 397 66.8
FAN06G0035 Fragaria x ananassa HOM05D002866 ORTHO05D008706 1.1e-135 487.3 389 67.1
Aa31LG11G1890 Aethionema arabicum HOM05D002866 ORTHO05D008706 2.5e-135 486.1 406 64.5
PSO063G2361 Papaver somniferum HOM05D002866 ORTHO05D008706 3.6e-134 482.3 397 65.2
EL10Ac3g05867 Beta vulgaris HOM05D002866 ORTHO05D008706 6.1e-134 481.5 392 65.6
Ah.07g207580 Amaranthus hybridus HOM05D002866 ORTHO05D008706 1.8e-133 479.9 392 65.1
Eucgr.A02912 Eucalyptus grandis HOM05D002866 ORTHO05D008706 4.4e-132 475.3 388 64.4
FAN03G0071 Fragaria x ananassa HOM05D002866 ORTHO05D008706 3.2e-130 469.2 389 66.3
Sopen03g024260 Solanum pennellii HOM05D002866 ORTHO05D008706 1.5e-127 460.3 332 72.3
Hund27168 Selenicereus undatus HOM05D002866 ORTHO05D008706 4.7e-126 455.3 469 55.4
CDE02G3129 Ceratophyllum demersum HOM05D002866 ORTHO05D008706 1.3e-120 437.2 392 60.5
Os07g0486500 Oryza sativa ssp. japonica HOM05D002866 ORTHO05D008706 2.1e-118 429.9 393 60.3
Actinidia13600 Actinidia chinensis HOM05D000164 ORTHO05D000096 1.5e-116 423.7 277 81.2
ATR0057G110 Amborella trichopoda HOM05D002866 ORTHO05D008706 1.1e-114 417.5 422 58.1
AUR62002232 Chenopodium quinoa HOM05D002866 ORTHO05D008706 3.5e-113 412.5 392 58.4
AUR62015444 Chenopodium quinoa HOM05D002866 ORTHO05D008706 3.0e-112 409.5 394 58.6
HPP92_007440 Vanilla planifolia HOM05D002866 ORTHO05D008706 1.5e-111 407.1 395 57.0
AT5G61530 Arabidopsis thaliana HOM05D002866 ORTHO05D008706 6.8e-109 398.3 278 75.5
Zm00001eb321610 Zea mays HOM05D002866 ORTHO05D008706 5.3e-101 372.1 397 54.9
AagrBONN_evm.TU.Sc2ySwM_368.2292 Anthoceros agrestis HOM05D002866 ORTHO05D008706 6.5e-75 285.4 433 40.6
Zm00001eb105130 Zea mays HOM05D002866 ORTHO05D008706 2.4e-69 266.9 245 59.2
AL6G41360 Arabidopsis lyrata HOM05D002866 ORTHO05D008706 5.7e-63 245.7 158 77.2
AL4G20970 Arabidopsis lyrata HOM05D002866 ORTHO05D008706 1.4e-61 241.1 158 76.6
AL7G45270 Arabidopsis lyrata HOM05D002866 ORTHO05D008706 1.2e-60 238.0 167 72.5
Mapoly0101s0019 Marchantia polymorpha HOM05D002866 ORTHO05D008706 3.4e-60 236.5 468 34.6
GSVIVG01032279001 Vitis vinifera HOM05D002866 ORTHO05D008706 1.0e-51 208.4 148 73.0
CBR_g12377 Chara braunii HOM05D002866 ORTHO05D008706 1.9e-50 204.1 347 38.9
AL9U10640 Arabidopsis lyrata HOM05D002866 ORTHO05D008706 7.2e-50 202.2 167 64.7
GSVIVG01032275001 Vitis vinifera HOM05D002866 ORTHO05D008706 3.7e-46 189.9 129 72.9
GSVIVG01005702001 Vitis vinifera HOM05D002866 ORTHO05D008706 6.5e-43 179.1 126 72.2
SEGI_37372 Sequoiadendron giganteum HOM05D002866 ORTHO05D008706 7.2e-42 175.6 140 60.0
ECA233G4879 Erigeron canadensis HOM05D000383 ORTHO05D000730 3.4e-31 140.2 111 62.2
Oeu031440.1 Olea europaea HOM05D002866 ORTHO05D008706 5.4e-29 132.9 112 58.9
Oeu017777.1 Olea europaea HOM05D002866 ORTHO05D008706 2.3e-27 127.5 110 64.5
BcaNung07329 Brassica carinata HOM05D002866 ORTHO05D008706 1.8e-24 117.9 87 73.6
GSVIVG01032273001 Vitis vinifera HOM05D002866 ORTHO05D008706 8.9e-24 115.5 97 64.9
Cfa024407 Carpinus fangiana HOM05D006418 ORTHO05D008063 2.5e-10 70.9 163 30.7
GSVIVG01006058001 Vitis vinifera HOM05D002866 ORTHO05D441252 9.5e-10 68.9 39 84.6
GSVIVG01005989001 Vitis vinifera HOM05D002866 ORTHO05D440186 2.1e-09 67.8 39 82.1
SEGI_06793 Sequoiadendron giganteum HOM05D002866 ORTHO05D014815 3.4e-07 60.5 132 33.3
Lj9A174G23 Lonicera japonica HOM05D002866 ORTHO05D234197 4.4e-07 60.1 116 36.2
Gorai.001G122500 Gossypium raimondii HOM05D000892 ORTHO05D000750 1.7e-06 58.2 217 27.2
QL01p012113 Quercus lobata HOM05D000892 ORTHO05D000750 2.2e-06 57.8 164 29.9
Gohir.D07G114200 Gossypium hirsutum HOM05D000892 ORTHO05D000750 2.9e-06 57.4 217 27.2
Lsat_1_v5_gn_9_20721 Lactuca sativa HOM05D000892 ORTHO05D000750 2.9e-06 57.4 160 29.4
FvH4_6g19150 Fragaria vesca HOM05D000892 ORTHO05D000750 3.7e-06 57.0 159 27.0
FAN05G5599 Fragaria x ananassa HOM05D000892 ORTHO05D000750 3.7e-06 57.0 159 27.0
FAN14G3756 Fragaria x ananassa HOM05D000892 ORTHO05D000750 3.7e-06 57.0 159 27.0
Eucgr.B03841 Eucalyptus grandis HOM05D000892 ORTHO05D000750 4.9e-06 56.6 160 30.0
RcHm_v2.0_Chr3g0474261 Rosa chinensis HOM05D000892 ORTHO05D000750 4.9e-06 56.6 159 26.4
MD14G1027500 Malus domestica HOM05D000892 ORTHO05D000750 6.4e-06 56.2 159 25.8
FAN09G3508 Fragaria x ananassa HOM05D000892 ORTHO05D000750 8.3e-06 55.8 159 27.0


User provided reference genes

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