Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.08G035400 Carya illinoinensis HOM05D004893 ORTHO05D006320 0.0e+00 1243.8 615 100.0
Cfa013310 Carpinus fangiana HOM05D004893 ORTHO05D006320 1.6e-290 1002.3 583 85.1
Cfa010313 Carpinus fangiana HOM05D004893 ORTHO05D006320 1.4e-289 999.2 583 84.4
QL02p098221 Quercus lobata HOM05D004893 ORTHO05D006320 6.9e-281 970.3 583 81.6
Haze_03433 Corylus avellana HOM05D004893 ORTHO05D006320 4.2e-270 934.5 589 79.8
Manes.06G023100 Manihot esculenta HOM05D004893 ORTHO05D006320 1.1e-257 893.3 583 74.6
Potri.006G166500 Populus trichocarpa HOM05D004893 ORTHO05D006320 8.5e-255 883.6 584 74.5
Atru.chr7.881 Acer truncatum HOM05D004893 ORTHO05D006320 1.1e-254 883.2 588 73.5
Sabra06G0128100 Salix brachista HOM05D004893 ORTHO05D006320 2.0e-251 872.5 584 73.5
TAR627G1078 Trochodendron aralioides HOM05D004893 ORTHO05D006320 5.7e-251 870.9 582 73.5
Atru.chr13.1778 Acer truncatum HOM05D004893 ORTHO05D006320 3.7e-250 868.2 583 73.6
Ciclev10007405m.g Citrus clementina HOM05D004893 ORTHO05D006320 1.4e-249 866.3 589 72.5
Thecc.09G175700 Theobroma cacao HOM05D004893 ORTHO05D006320 2.4e-249 865.5 583 72.6
GSVIVG01030738001 Vitis vinifera HOM05D004893 ORTHO05D006320 2.0e-248 862.4 582 72.0
CSS0040034 Camellia sinensis var. sinensis HOM05D004893 ORTHO05D006320 2.7e-248 862.1 583 71.9
Duzib150G0781 Durio zibethinus HOM05D004893 ORTHO05D006320 3.5e-248 861.7 583 71.7
Gorai.009G004800 Gossypium raimondii HOM05D004893 ORTHO05D006320 1.0e-247 860.1 583 71.5
Hma1.2p1_0321F.1_g124570 Hydrangea macrophylla HOM05D004893 ORTHO05D006320 1.0e-247 860.1 583 71.4
CSS0008978 Camellia sinensis var. sinensis HOM05D004893 ORTHO05D006320 2.2e-247 859.0 583 71.7
Gohir.A05G004264 Gossypium hirsutum HOM05D004893 ORTHO05D006320 3.8e-247 858.2 582 71.5
Gohir.D05G004900 Gossypium hirsutum HOM05D004893 ORTHO05D006320 3.8e-247 858.2 583 71.4
Potri.018G091100 Populus trichocarpa HOM05D004893 ORTHO05D006320 5.0e-247 857.8 584 72.8
vmacro21776 Vaccinium macrocarpon HOM05D004893 ORTHO05D006320 2.7e-245 852.0 583 70.3
Prupe.1G084200 Prunus persica HOM05D004893 ORTHO05D006320 6.1e-245 850.9 583 73.4
Sed0012025 Sechium edule HOM05D004893 ORTHO05D006320 1.3e-242 843.2 583 70.0
CANSAT11G1129 Cannabis sativa HOM05D004893 ORTHO05D006320 3.7e-242 841.6 578 70.1
Eucgr.C02353 Eucalyptus grandis HOM05D004893 ORTHO05D006320 8.3e-242 840.5 582 71.1
PGR044G2140 Punica granatum HOM05D004893 ORTHO05D006320 7.0e-241 837.4 582 71.3
ClCG06G013450 Citrullus lanatus HOM05D004893 ORTHO05D006320 9.1e-241 837.0 584 71.2
MD13G1251600 Malus domestica HOM05D004893 ORTHO05D006320 1.2e-240 836.6 581 71.4
RcHm_v2.0_Chr4g0401591 Rosa chinensis HOM05D004893 ORTHO05D006320 5.9e-240 834.3 574 71.6
CsaV3_1G031710 Cucumis sativus L. HOM05D004893 ORTHO05D006320 8.6e-239 830.5 583 70.2
FAN12G2097 Fragaria x ananassa HOM05D004893 ORTHO05D006320 3.2e-238 828.6 580 70.3
Sed0012855 Sechium edule HOM05D004893 ORTHO05D006320 2.8e-237 825.5 583 69.3
Nn7g38118 Nelumbo nucifera HOM05D004893 ORTHO05D006320 8.0e-237 823.9 583 67.9
FvH4_4g07920 Fragaria vesca HOM05D004893 ORTHO05D006320 3.0e-236 822.0 580 69.8
TWI34G0813 Tripterygium wilfordii HOM05D004893 ORTHO05D006320 5.2e-236 821.2 583 68.6
FAN22G1078 Fragaria x ananassa HOM05D004893 ORTHO05D006320 8.8e-236 820.5 580 69.7
Sc12g0007760 Simmondsia chinensis HOM05D004893 ORTHO05D006320 3.7e-234 815.1 579 67.7
SalBow8G3700 Salvia bowleyana HOM05D004893 ORTHO05D006320 1.1e-233 813.5 582 69.1
Lj4g0004814 Lotus japonicus HOM05D004893 ORTHO05D006320 3.1e-233 812.0 579 68.4
FAN07G0898 Fragaria x ananassa HOM05D004893 ORTHO05D006320 4.1e-233 811.6 582 69.2
Rhsim13G0225800 Rhododendron simsii HOM05D004893 ORTHO05D006320 1.0e-231 807.0 619 64.0
MELO3C017452.2 Cucumis melo HOM05D004893 ORTHO05D006320 1.7e-231 806.2 583 69.3
Actinidia07346 Actinidia chinensis HOM05D004893 ORTHO05D006320 3.3e-230 802.0 537 71.7
AT2G18900 Arabidopsis thaliana HOM05D004893 ORTHO05D006320 5.2e-228 794.7 589 66.2
HanXRQChr09g0273501 Helianthus annuus HOM05D004893 ORTHO05D006320 5.2e-228 794.7 578 66.6
Peaxi162Scf00452g00844 Petunia axillaris HOM05D004893 ORTHO05D006320 8.9e-228 793.9 582 66.3
ECA240G4652 Erigeron canadensis HOM05D004893 ORTHO05D006320 1.5e-227 793.1 583 66.2
Thhalv10022562m.g Eutrema salsugineum HOM05D004893 ORTHO05D006320 5.7e-227 791.2 588 66.3
Lalb_Chr07g0180551 Lupinus albus HOM05D004893 ORTHO05D006320 5.7e-227 791.2 584 69.0
MSTRG.16114 Avicennia marina HOM05D004893 ORTHO05D006320 1.7e-226 789.6 582 66.8
Sp3g32370 Schrenkiella parvula HOM05D004893 ORTHO05D006320 1.8e-225 786.2 588 65.8
DCAR_013745 Daucus carota HOM05D004893 ORTHO05D006320 2.4e-225 785.8 582 66.3
arahy.Tifrunner.gnm1.ann1.B5GTII Arachis hypogaea HOM05D004893 ORTHO05D006320 1.6e-224 783.1 587 67.3
Carub.0003s3314 Capsella rubella HOM05D004893 ORTHO05D006320 2.0e-224 782.7 590 65.6
VMungo1215G1808 Vigna mungo HOM05D004893 ORTHO05D006320 2.7e-224 782.3 588 66.8
Cc05_g16000 Coffea canephora HOM05D004893 ORTHO05D006320 4.6e-224 781.6 583 65.9
AL3G53020 Arabidopsis lyrata HOM05D004893 ORTHO05D006320 5.9e-224 781.2 589 65.2
FAN17G0276 Fragaria x ananassa HOM05D004893 ORTHO05D006320 1.0e-223 780.4 643 62.2
THA.LOC104803489 Tarenaya hassleriana HOM05D004893 ORTHO05D006320 3.0e-223 778.9 585 65.0
Aqoxy3G03036 Aquilegia oxysepala HOM05D004893 ORTHO05D006320 5.0e-223 778.1 585 65.8
EL10Ac6g14738 Beta vulgaris HOM05D004893 ORTHO05D006320 1.5e-222 776.5 579 65.1
C07p03690 Brassica napus HOM05D004893 ORTHO05D006320 2.5e-222 775.8 588 65.8
BolC7t40765H Brassica oleracea HOM05D004893 ORTHO05D006320 2.5e-222 775.8 588 65.8
TPR.G5437 Trifolium pratense HOM05D004893 ORTHO05D006320 2.5e-222 775.8 579 65.5
COL.COLO4_37741 Corchorus olitorius HOM05D004893 ORTHO05D006320 4.3e-222 775.0 583 67.4
Ah.09g231700 Amaranthus hybridus HOM05D004893 ORTHO05D006320 9.5e-222 773.9 583 65.5
BcaC06g36488 Brassica carinata HOM05D004893 ORTHO05D006320 9.5e-222 773.9 588 65.6
A07p01760 Brassica napus HOM05D004893 ORTHO05D006320 2.8e-221 772.3 583 65.9
Ca_21236_v3 Cicer arietinum L. HOM05D004893 ORTHO05D006320 4.7e-221 771.5 580 65.7
Solyc07g066410.4 Solanum lycopersicum HOM05D004893 ORTHO05D006320 1.1e-220 770.4 582 65.1
Lsat_1_v5_gn_7_72221 Lactuca sativa HOM05D004893 ORTHO05D006320 1.8e-220 769.6 582 66.3
Lj8C187G7 Lonicera japonica HOM05D004893 ORTHO05D006320 1.2e-219 766.9 603 65.7
BraA07t27976Z Brassica rapa HOM05D004893 ORTHO05D006320 2.0e-219 766.1 595 64.5
CARHR109460 Cardamine hirsuta HOM05D004893 ORTHO05D006320 2.6e-219 765.8 591 63.8
Phvul.003G144100 Phaseolus vulgaris HOM05D004893 ORTHO05D006320 3.4e-219 765.4 588 65.3
Psat4g012800 Pisum sativum HOM05D004893 ORTHO05D006320 1.7e-218 763.1 579 63.9
Nitab4.5_0008437g0020 Nicotiana tabacum HOM05D004893 ORTHO05D006320 8.3e-218 760.8 594 64.5
Sopen07g034580 Solanum pennellii HOM05D004893 ORTHO05D006320 8.3e-218 760.8 582 64.4
arahy.Tifrunner.gnm1.ann1.48BVGN Arachis hypogaea HOM05D004893 ORTHO05D006320 1.9e-217 759.6 591 65.7
Glyma.13G097400 Glycine max HOM05D004893 ORTHO05D006320 1.9e-217 759.6 585 65.8
PSO063G4841 Papaver somniferum HOM05D004893 ORTHO05D006320 1.9e-214 749.6 583 65.9
Glyma.17G062200 Glycine max HOM05D004893 ORTHO05D006320 7.3e-214 747.7 590 64.9
Medtr4g127820 Medicago truncatula HOM05D004893 ORTHO05D006320 9.5e-214 747.3 579 64.8
Aa31LG8G15990 Aethionema arabicum HOM05D004893 ORTHO05D006320 3.1e-212 742.3 593 62.7
PSO782G3725 Papaver somniferum HOM05D004893 ORTHO05D006320 6.8e-212 741.1 583 65.0
CDE08G1653 Ceratophyllum demersum HOM05D004893 ORTHO05D006320 2.8e-205 719.2 582 61.9
ATR1098G135 Amborella trichopoda HOM05D004893 ORTHO05D006320 7.8e-200 701.0 581 61.6
Migut.M01562 Erythranthe guttata HOM05D004893 ORTHO05D006320 2.3e-199 699.5 508 66.9
HPP92_012201 Vanilla planifolia HOM05D004893 ORTHO05D006320 9.6e-198 694.1 582 58.6
BcaB03g16682 Brassica carinata HOM05D004893 ORTHO05D006320 3.6e-197 692.2 586 60.1
Nitab4.5_0001749g0080 Nicotiana tabacum HOM05D004893 ORTHO05D006320 1.9e-193 679.9 585 60.2
SGA_v2.0_scaffold186G40224 Striga asiatica HOM05D004893 ORTHO05D006320 1.1e-190 670.6 653 55.6
Hund06466 Selenicereus undatus HOM05D004893 ORTHO05D006320 4.3e-190 668.7 580 59.7
AUR62042215 Chenopodium quinoa HOM05D004893 ORTHO05D006320 4.5e-187 658.7 580 56.7
Dinv42517 Davidia involucrata HOM05D004893 ORTHO05D006320 9.3e-185 651.0 461 69.4
Zm00001eb031520 Zea mays HOM05D004893 ORTHO05D006320 1.0e-183 647.5 607 54.7
Os12g0609800 Oryza sativa ssp. japonica HOM05D004893 ORTHO05D006320 4.3e-182 642.1 583 55.1
AUR62033061 Chenopodium quinoa HOM05D004893 ORTHO05D006320 4.0e-172 609.0 580 53.8
MD16G1255900 Malus domestica HOM05D004893 ORTHO05D006320 6.3e-157 558.5 583 53.5
unitig_748.g7834 Utricularia gibba HOM05D004893 ORTHO05D006320 1.1e-156 557.8 582 51.0
SEGI_38878 Sequoiadendron giganteum HOM05D004893 ORTHO05D006320 1.1e-148 531.2 589 48.6
Thhalv10024453m.g Eutrema salsugineum HOM05D004893 ORTHO05D006320 6.5e-146 521.9 622 47.7
AL7G19230 Arabidopsis lyrata HOM05D004893 ORTHO05D006320 1.4e-145 520.8 594 49.0
AT3G26480 Arabidopsis thaliana HOM05D004893 ORTHO05D006320 8.0e-144 515.0 593 48.2
C01p06460 Brassica napus HOM05D004893 ORTHO05D006320 1.2e-134 484.6 597 46.9
Cpa.g.sc523.1 Carica papaya HOM05D004893 ORTHO05D006320 2.0e-131 473.8 338 68.3
BolC1t00640H Brassica oleracea HOM05D004893 ORTHO05D006320 1.3e-125 454.5 591 45.0
Mapoly0156s0021 Marchantia polymorpha HOM05D004893 ORTHO05D006320 1.8e-119 434.1 595 41.2
BcaB07g31639 Brassica carinata HOM05D004893 ORTHO05D006320 4.4e-118 429.5 593 44.4
AagrBONN_evm.TU.Sc2ySwM_228.3065 Anthoceros agrestis HOM05D004893 ORTHO05D006320 1.6e-112 411.0 611 39.9
Pp3c7_4120 Physcomitrium patens HOM05D004893 ORTHO05D006320 2.8e-112 410.2 608 41.0
Carub.0007s0802 Capsella rubella HOM05D004893 ORTHO05D006320 5.8e-110 402.5 452 48.5
Oeu016137.1 Olea europaea HOM05D004893 ORTHO05D001543 5.8e-110 402.5 391 55.0
BcaC09g52044 Brassica carinata HOM05D004893 ORTHO05D006320 2.4e-108 397.1 574 43.7
SMO356G0292 Selaginella moellendorffii HOM05D004893 ORTHO05D006320 1.6e-99 367.9 594 37.7
CARHR240500 Cardamine hirsuta HOM05D004893 ORTHO05D006320 2.2e-85 320.9 407 45.2
MBI02_g12652_MAGBIO Magnolia biondii HOM05D004893 ORTHO05D006320 4.8e-72 276.6 246 60.6
CBR_g49376 Chara braunii HOM05D004893 ORTHO05D006320 8.4e-69 265.8 525 32.4
Cre04.g215350 Chlamydomonas reinhardtii HOM05D004893 ORTHO05D006320 1.4e-63 248.4 673 29.7
RcHm_v2.0_Chr4g0401681 Rosa chinensis HOM05D004893 ORTHO05D006320 3.1e-63 247.3 156 76.3
MBI02_g33733_MAGBIO Magnolia biondii HOM05D004893 ORTHO05D006320 7.1e-52 209.5 157 66.9
PRCOL_00005731 Prasinoderma coloniale HOM05D004893 ORTHO05D006320 2.4e-39 167.9 707 23.9
MCO01G002 Micromonas commoda HOM05D004893 ORTHO05D006320 1.4e-36 158.7 468 29.9
SHI02896 Sapria himalayana HOM05D004893 ORTHO05D006320 3.7e-32 144.1 104 67.3
Glyma.11G074200 Glycine max HOM05D004893 ORTHO05D006320 1.7e-21 108.6 96 60.4
BolC9t54333H Brassica oleracea HOM05D004893 ORTHO05D006320 7.5e-17 93.2 63 71.4
Cfa026329 Carpinus fangiana HOM05D004893 ORTHO05D006320 1.5e-12 79.0 92 43.5
RcHm_v2.0_Chr4g0401691 Rosa chinensis HOM05D004893 ORTHO05D006320 4.7e-11 73.9 52 65.4
arahy.Tifrunner.gnm1.ann1.09RZEI Arachis hypogaea HOM05D004893 ORTHO05D006320 8.0e-11 73.2 46 73.9
arahy.Tifrunner.gnm1.ann1.BHNU0I Arachis hypogaea HOM05D004893 ORTHO05D006320 1.4e-10 72.4 46 71.7
Lsat_1_v5_gn_5_51440 Lactuca sativa HOM05D004893 ORTHO05D048382 1.4e-10 72.4 97 43.3
BcaC04g22880 Brassica carinata HOM05D004893 ORTHO05D006320 9.8e-09 66.2 49 67.3
BolC9t54332H Brassica oleracea HOM05D004893 ORTHO05D006320 1.3e-08 65.9 48 68.8
C09p14300 Brassica napus HOM05D004893 ORTHO05D006320 1.8e-07 62.0 48 66.7
BcaC06g36526 Brassica carinata HOM05D004893 ORTHO05D032397 3.5e-06 57.8 37 75.7
BcaC09g48066 Brassica carinata HOM05D014782 ORTHO05D031875 3.5e-06 57.8 37 62.2
C07p03290 Brassica napus HOM05D004893 ORTHO05D032397 3.5e-06 57.8 37 75.7
BolC7t40730H Brassica oleracea HOM05D004893 ORTHO05D032397 3.5e-06 57.8 37 75.7
Lsat_1_v5_gn_4_117360 Lactuca sativa HOM05D004893 ORTHO05D006320 4.5e-06 57.4 83 43.4


User provided reference genes

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