Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.08G035200 Carya illinoinensis HOM05D004757 ORTHO05D005743 9.3e-59 230.3 146 100.0
Haze_21940 Corylus avellana HOM05D004757 ORTHO05D005743 1.5e-45 186.4 145 67.6
Cfa013398 Carpinus fangiana HOM05D004757 ORTHO05D005743 4.9e-44 181.4 141 66.7
CiPaw.07G193700 Carya illinoinensis HOM05D004757 ORTHO05D005743 7.1e-43 177.6 141 66.0
Atru.chr7.878 Acer truncatum HOM05D004757 ORTHO05D005743 2.2e-39 166.0 143 60.1
Duzib150G0244 Durio zibethinus HOM05D004757 ORTHO05D005743 1.1e-38 163.7 141 64.5
QL02p098330 Quercus lobata HOM05D004757 ORTHO05D005743 9.0e-38 160.6 143 69.9
Duzib168G0914 Durio zibethinus HOM05D004757 ORTHO05D005743 1.5e-37 159.8 141 63.8
Gorai.004G099000 Gossypium raimondii HOM05D004757 ORTHO05D005743 1.5e-37 159.8 143 65.7
Thecc.09G175100 Theobroma cacao HOM05D004757 ORTHO05D005743 1.5e-37 159.8 141 68.8
Duzib170G0153 Durio zibethinus HOM05D004757 ORTHO05D005743 2.0e-37 159.5 141 66.0
Manes.06G022800 Manihot esculenta HOM05D004757 ORTHO05D005743 2.6e-37 159.1 141 60.3
Gohir.D08G093400 Gossypium hirsutum HOM05D004757 ORTHO05D005743 3.4e-37 158.7 141 66.0
Gohir.A08G083700 Gossypium hirsutum HOM05D004757 ORTHO05D005743 4.5e-37 158.3 141 66.0
A07p01750 Brassica napus HOM05D004757 ORTHO05D005743 5.9e-37 157.9 142 59.9
Manes.14G157383 Manihot esculenta HOM05D004757 ORTHO05D005743 5.9e-37 157.9 141 57.4
BcaB07g31638 Brassica carinata HOM05D004757 ORTHO05D005743 1.0e-36 157.1 142 59.2
BcaC04g22879 Brassica carinata HOM05D004757 ORTHO05D005743 1.0e-36 157.1 142 59.2
A09p12120 Brassica napus HOM05D004757 ORTHO05D005743 1.0e-36 157.1 142 59.2
Potri.006G166400 Populus trichocarpa HOM05D004757 ORTHO05D005743 1.3e-36 156.8 153 56.9
AL3G53010 Arabidopsis lyrata HOM05D004757 ORTHO05D005743 2.2e-36 156.0 142 58.5
C07p03670 Brassica napus HOM05D004757 ORTHO05D005743 2.2e-36 156.0 142 59.2
BolC3t18202H Brassica oleracea HOM05D004757 ORTHO05D005743 2.2e-36 156.0 142 57.0
BolC7t40764H Brassica oleracea HOM05D004757 ORTHO05D005743 2.2e-36 156.0 142 59.2
BraA07t27976Z Brassica rapa HOM05D004893 ORTHO05D006320 2.2e-36 156.0 142 59.2
ClCG06G013460 Citrullus lanatus HOM05D004757 ORTHO05D005743 2.9e-36 155.6 146 60.3
MELO3C017451.2 Cucumis melo HOM05D004757 ORTHO05D005743 2.9e-36 155.6 150 58.0
Carub.0003s3315 Capsella rubella HOM05D004757 ORTHO05D005743 5.0e-36 154.8 142 57.0
AT2G18910 Arabidopsis thaliana HOM05D004757 ORTHO05D005743 6.5e-36 154.5 142 57.7
BcaB03g16684 Brassica carinata HOM05D004757 ORTHO05D005743 1.1e-35 153.7 142 59.9
CsaV3_1G031720 Cucumis sativus L. HOM05D004757 ORTHO05D005743 1.1e-35 153.7 146 59.6
Potri.018G090900 Populus trichocarpa HOM05D004757 ORTHO05D005743 1.4e-35 153.3 152 56.6
Aa31LG8G16000 Aethionema arabicum HOM05D004757 ORTHO05D005743 2.5e-35 152.5 142 55.6
C09p14310 Brassica napus HOM05D004757 ORTHO05D005743 2.5e-35 152.5 154 55.8
BraA09t36856Z Brassica rapa HOM05D004757 ORTHO05D005743 3.2e-35 152.1 142 58.5
C03p59380 Brassica napus HOM05D004757 ORTHO05D005743 4.2e-35 151.8 142 55.6
Ciclev10009829m.g Citrus clementina HOM05D004757 ORTHO05D005743 7.2e-35 151.0 149 60.4
CARHR109470 Cardamine hirsuta HOM05D004757 ORTHO05D005743 9.4e-35 150.6 142 56.3
Cpa.g.sc95.44 Carica papaya HOM05D004757 ORTHO05D005743 9.4e-35 150.6 142 62.0
Medtr4g127810 Medicago truncatula HOM05D004757 ORTHO05D005743 9.4e-35 150.6 148 56.1
Prupe.1G082700 Prunus persica HOM05D004757 ORTHO05D005743 9.4e-35 150.6 141 67.4
TWI34G1741 Tripterygium wilfordii HOM05D004757 ORTHO05D005743 1.2e-34 150.2 143 56.6
THA.LOC104803943 Tarenaya hassleriana HOM05D004757 ORTHO05D005743 2.1e-34 149.4 141 54.6
BcaC06g36489 Brassica carinata HOM05D004757 ORTHO05D005743 2.7e-34 149.1 140 57.9
BolC9t54334H Brassica oleracea HOM05D004757 ORTHO05D005743 2.7e-34 149.1 152 55.3
Gorai.004G027500 Gossypium raimondii HOM05D004757 ORTHO05D005743 3.6e-34 148.7 143 67.8
TWI63G0987 Tripterygium wilfordii HOM05D004757 ORTHO05D005743 7.9e-34 147.5 143 55.2
MD16G1255800 Malus domestica HOM05D004757 ORTHO05D005743 1.4e-33 146.7 144 67.4
Sp3g32380 Schrenkiella parvula HOM05D004757 ORTHO05D005743 1.4e-33 146.7 142 56.3
BraA06t26238Z Brassica rapa HOM05D004757 ORTHO05D005743 2.3e-33 146.0 143 53.8
Gohir.A08G019400 Gossypium hirsutum HOM05D004757 ORTHO05D005743 3.0e-33 145.6 143 65.7
Lj4g0011233 Lotus japonicus HOM05D004757 ORTHO05D005743 3.0e-33 145.6 147 57.1
A06p33080 Brassica napus HOM05D004757 ORTHO05D005743 5.1e-33 144.8 142 53.5
Gohir.D08G030000 Gossypium hirsutum HOM05D004757 ORTHO05D005743 1.5e-32 143.3 143 65.0
TPR.G5446 Trifolium pratense HOM05D004757 ORTHO05D005743 1.9e-32 142.9 148 54.1
Sed0015670 Sechium edule HOM05D004757 ORTHO05D005743 4.3e-32 141.7 148 53.4
Sed0003925 Sechium edule HOM05D004757 ORTHO05D005743 7.4e-32 141.0 146 57.5
Hma1.2p1_1303F.1_g274440 Hydrangea macrophylla HOM05D004757 ORTHO05D005743 2.8e-31 139.0 142 73.2
THA.LOC104803488 Tarenaya hassleriana HOM05D004757 ORTHO05D005743 3.7e-31 138.7 142 51.4
Ca_21237_v3 Cicer arietinum L. HOM05D004757 ORTHO05D005743 6.3e-31 137.9 147 55.1
RcHm_v2.0_Chr4g0401201 Rosa chinensis HOM05D004757 ORTHO05D005743 6.3e-31 137.9 141 75.9
Thhalv10022848m.g Eutrema salsugineum HOM05D004757 ORTHO05D005743 8.2e-31 137.5 142 61.3
FvH4_4g07900 Fragaria vesca HOM05D004757 ORTHO05D005743 1.1e-30 137.1 141 68.1
FAN17G1906 Fragaria x ananassa HOM05D004757 ORTHO05D005743 1.1e-30 137.1 141 64.5
Glyma.13G097500 Glycine max HOM05D004757 ORTHO05D005743 5.3e-30 134.8 145 54.5
Glyma.17G062100 Glycine max HOM05D004757 ORTHO05D005743 1.5e-29 133.3 147 53.1
TAR626G1857 Trochodendron aralioides HOM05D004757 ORTHO05D005743 2.0e-29 132.9 146 52.7
VMungo1215G0044 Vigna mungo HOM05D004757 ORTHO05D005743 2.0e-29 132.9 145 53.8
Actinidia01305 Actinidia chinensis HOM05D004757 ORTHO05D005743 2.6e-29 132.5 146 51.4
Dinv19553 Davidia involucrata HOM05D004757 ORTHO05D005743 3.4e-29 132.1 144 53.5
Sabra06G0128000 Salix brachista HOM05D004757 ORTHO05D005743 3.4e-29 132.1 186 50.0
Phvul.003G144000 Phaseolus vulgaris HOM05D004757 ORTHO05D005743 4.5e-29 131.7 145 52.4
MD13G1249500 Malus domestica HOM05D004757 ORTHO05D005743 5.9e-29 131.3 144 63.2
Eucgr.C00145 Eucalyptus grandis HOM05D004757 ORTHO05D005743 1.0e-28 130.6 143 55.2
Lalb_Chr13g0300141 Lupinus albus HOM05D004757 ORTHO05D005743 1.0e-28 130.6 141 51.8
Psat4g012760 Pisum sativum HOM05D004757 ORTHO05D005743 1.0e-28 130.6 147 50.3
PGR044G0017 Punica granatum HOM05D004757 ORTHO05D005743 1.3e-28 130.2 140 53.6
Lalb_Chr12g0199461 Lupinus albus HOM05D004757 ORTHO05D005743 2.9e-28 129.0 141 62.4
Peaxi162Scf01558g00012 Petunia axillaris HOM05D004757 ORTHO05D005743 5.0e-28 128.3 141 53.2
Actinidia19844 Actinidia chinensis HOM05D004757 ORTHO05D005743 1.4e-27 126.7 149 51.0
HanXRQChr09g0254201 Helianthus annuus HOM05D004757 ORTHO05D005743 1.4e-27 126.7 143 52.4
FAN12G2780 Fragaria x ananassa HOM05D004757 ORTHO05D005743 9.4e-27 124.0 164 58.5
HanXRQChr09g0244371 Helianthus annuus HOM05D004757 ORTHO05D005743 9.4e-27 124.0 146 48.6
Lsat_1_v5_gn_7_54961 Lactuca sativa HOM05D004757 ORTHO05D005743 9.4e-27 124.0 141 55.3
FAN07G0988 Fragaria x ananassa HOM05D004757 ORTHO05D005743 3.6e-26 122.1 164 57.9
FAN22G2108 Fragaria x ananassa HOM05D004757 ORTHO05D005743 3.6e-26 122.1 164 57.9
PGR142G2781 Punica granatum HOM05D004757 ORTHO05D005743 3.6e-26 122.1 140 65.7
TAR383G0800 Trochodendron aralioides HOM05D004757 ORTHO05D005743 4.7e-26 121.7 157 47.8
CANSAT11G1025 Cannabis sativa HOM05D004757 ORTHO05D005743 7.9e-26 120.9 141 68.8
Sabra18G0078100 Salix brachista HOM05D004757 ORTHO05D005743 1.4e-25 120.2 181 48.6
Hma1.2p1_0935F.1_g238550 Hydrangea macrophylla HOM05D004757 ORTHO05D005743 1.8e-25 119.8 142 53.5
Hma1.2p1_2317F.1_g319740 Hydrangea macrophylla HOM05D004757 ORTHO05D005743 1.8e-25 119.8 142 54.2
Rhsim01G0003200 Rhododendron simsii HOM05D004757 ORTHO05D005743 1.8e-25 119.8 142 64.8
Aqoxy7G02958 Aquilegia oxysepala HOM05D004757 ORTHO05D005743 2.3e-25 119.4 150 55.3
PSO170G5353 Papaver somniferum HOM05D004757 ORTHO05D005743 3.0e-25 119.0 164 44.5
PSO063G6152 Papaver somniferum HOM05D004757 ORTHO05D005743 6.7e-25 117.9 164 43.3
Eucgr.L02640 Eucalyptus grandis HOM05D004757 ORTHO05D005743 1.5e-24 116.7 147 45.6
unitig_21.g20652 Utricularia gibba HOM05D004757 ORTHO05D005743 1.5e-24 116.7 141 46.1
ECA234G2687 Erigeron canadensis HOM05D004757 ORTHO05D005743 3.3e-24 115.5 139 46.0
Oeu025209.1 Olea europaea HOM05D004757 ORTHO05D005743 4.4e-24 115.2 139 51.1
Oeu025694.3 Olea europaea HOM05D004757 ORTHO05D005743 4.4e-24 115.2 140 47.1
CDE04G2108 Ceratophyllum demersum HOM05D004757 ORTHO05D005743 5.7e-24 114.8 141 46.1
Cc06_g12990 Coffea canephora HOM05D004757 ORTHO05D005743 9.7e-24 114.0 137 53.3
DCAR_020127 Daucus carota HOM05D004757 ORTHO05D005743 9.7e-24 114.0 143 51.7
TAR636G1688 Trochodendron aralioides HOM05D004757 ORTHO05D005743 1.3e-23 113.6 146 54.8
MSTRG.6239 Avicennia marina HOM05D004757 ORTHO05D005743 1.7e-23 113.2 144 61.1
SalBow6G1691 Salvia bowleyana HOM05D004757 ORTHO05D005743 1.7e-23 113.2 141 55.3
GSVIVG01035530001 Vitis vinifera HOM05D004757 ORTHO05D005743 1.7e-23 113.2 140 49.3
CDE02G3269 Ceratophyllum demersum HOM05D004757 ORTHO05D005743 2.2e-23 112.8 141 53.9
Migut.J01503 Erythranthe guttata HOM05D004757 ORTHO05D005743 2.2e-23 112.8 146 46.6
PGSC0003DMG400018757 Solanum tuberosum HOM05D004757 ORTHO05D005743 2.2e-23 112.8 150 47.3
Migut.K00229 Erythranthe guttata HOM05D004757 ORTHO05D005743 2.8e-23 112.5 139 45.3
Solyc07g006960.3 Solanum lycopersicum HOM05D004757 ORTHO05D005743 2.8e-23 112.5 143 46.9
EL10Ac8g18296 Beta vulgaris HOM05D004757 ORTHO05D005743 3.7e-23 112.1 141 46.1
ECA240G0762 Erigeron canadensis HOM05D004757 ORTHO05D005743 3.7e-23 112.1 141 44.7
Hund09034 Selenicereus undatus HOM05D004757 ORTHO05D005743 3.7e-23 112.1 145 45.5
Lsat_1_v5_gn_5_85101 Lactuca sativa HOM05D004757 ORTHO05D005743 4.8e-23 111.7 141 47.5
MSTRG.19719 Avicennia marina HOM05D004757 ORTHO05D005743 8.2e-23 110.9 142 45.1
CSS0015413 Camellia sinensis var. sinensis HOM05D004757 ORTHO05D005743 1.1e-22 110.5 142 64.1
Lsat_1_v5_gn_8_68041 Lactuca sativa HOM05D004757 ORTHO05D005743 1.1e-22 110.5 143 43.4
MBI16_g31788_MAGBIO Magnolia biondii HOM05D004757 ORTHO05D005743 1.1e-22 110.5 160 46.9
Nitab4.5_0010128g0010 Nicotiana tabacum HOM05D004757 ORTHO05D005743 3.1e-22 109.0 141 46.1
Sc14g0001290 Simmondsia chinensis HOM05D004757 ORTHO05D005743 4.1e-22 108.6 144 42.4
Nn2g12725 Nelumbo nucifera HOM05D004757 ORTHO05D005743 5.3e-22 108.2 141 51.8
Ah.14g083740 Amaranthus hybridus HOM05D004757 ORTHO05D005743 9.1e-22 107.5 144 43.8
Sc08g0005260 Simmondsia chinensis HOM05D004757 ORTHO05D005743 9.1e-22 107.5 128 49.2
HanXRQChr05g0142021 Helianthus annuus HOM05D004757 ORTHO05D005743 5.9e-21 104.8 142 41.5
Sopen07g003050 Solanum pennellii HOM05D004757 ORTHO05D005743 1.0e-20 104.0 140 43.6
Nn8g40409 Nelumbo nucifera HOM05D004757 ORTHO05D005743 2.2e-20 102.8 144 57.6
CAN.G1464.4 Capsicum annuum HOM05D004757 ORTHO05D005743 5.0e-20 101.7 135 43.7
CSS0012735 Camellia sinensis var. sinensis HOM05D004757 ORTHO05D005743 2.5e-19 99.4 143 43.4
HPP92_015369 Vanilla planifolia HOM05D004757 ORTHO05D005743 2.5e-19 99.4 138 45.7
ECA236G5014 Erigeron canadensis HOM05D004757 ORTHO05D005743 7.2e-19 97.8 131 44.3
HanXRQChr10g0308501 Helianthus annuus HOM05D004757 ORTHO05D005743 2.1e-18 96.3 140 46.4
ATR0580G064 Amborella trichopoda HOM05D004757 ORTHO05D005743 2.7e-18 95.9 132 42.4
ATR0030G045 Amborella trichopoda HOM05D004757 ORTHO05D005743 3.6e-18 95.5 134 43.3
SGA_v2.0_scaffold66G22433 Striga asiatica HOM05D004757 ORTHO05D005743 3.6e-18 95.5 147 39.5
vmacro13132 Vaccinium macrocarpon HOM05D004757 ORTHO05D005743 4.7e-18 95.1 158 39.2
Zm00001eb420280 Zea mays HOM05D004757 ORTHO05D005743 6.7e-17 91.3 148 48.0
Peaxi162Scf00200g00183 Petunia axillaris HOM05D004757 ORTHO05D005743 1.1e-16 90.5 118 44.9
Os02g0461900 Oryza sativa ssp. japonica HOM05D004757 ORTHO05D005743 4.8e-15 85.1 153 43.1
Peaxi162Scf00200g01819 Petunia axillaris HOM05D004757 ORTHO05D005743 6.3e-15 84.7 69 60.9
Zm00001eb180540 Zea mays HOM05D004757 ORTHO05D005743 8.2e-15 84.3 150 37.3
Zm00001eb087060 Zea mays HOM05D004757 ORTHO05D005743 1.4e-14 83.6 65 61.5
Zm00001eb236700 Zea mays HOM05D004757 ORTHO05D005743 1.8e-14 83.2 153 35.9
Ah.09g229970 Amaranthus hybridus HOM05D004757 ORTHO05D005743 2.4e-14 82.8 174 35.1
Dinv41223 Davidia involucrata HOM05D004757 ORTHO05D005743 6.5e-12 74.7 117 48.7
AUR62043442 Chenopodium quinoa HOM05D000216 ORTHO05D003518 1.5e-11 73.6 65 50.8
Peaxi162Scf00200g00182 Petunia axillaris HOM05D004757 ORTHO05D005743 1.4e-09 67.0 107 42.1
Peaxi162Scf00627g00011 Petunia axillaris HOM05D004757 ORTHO05D005743 1.7e-07 60.1 118 35.6


User provided reference genes

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