Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.08G033800 Carya illinoinensis HOM05D004681 ORTHO05D005541 3.6e-177 624.8 313 100.0
CiPaw.07G195100 Carya illinoinensis HOM05D004681 ORTHO05D005541 2.7e-148 528.9 315 83.8
Cfa013431 Carpinus fangiana HOM05D004681 ORTHO05D005541 2.6e-143 512.3 315 82.2
QL12p032381 Quercus lobata HOM05D004681 ORTHO05D005541 2.3e-131 472.6 315 75.6
GSVIVG01010902001 Vitis vinifera HOM05D004681 ORTHO05D005541 1.4e-128 463.4 317 71.3
Duzib168G0714 Durio zibethinus HOM05D004681 ORTHO05D005541 1.1e-122 443.7 313 72.5
Atru.chr7.819 Acer truncatum HOM05D004681 ORTHO05D005541 3.3e-122 442.2 313 70.6
Actinidia06358 Actinidia chinensis HOM05D004681 ORTHO05D005541 1.7e-121 439.9 316 70.3
Thecc.09G181200 Theobroma cacao HOM05D004681 ORTHO05D005541 1.7e-121 439.9 316 70.6
Gohir.D08G028500 Gossypium hirsutum HOM05D004681 ORTHO05D005541 3.7e-121 438.7 316 69.3
Gohir.A08G017900 Gossypium hirsutum HOM05D004681 ORTHO05D005541 8.2e-121 437.6 316 69.3
Actinidia22469 Actinidia chinensis HOM05D004681 ORTHO05D005541 1.4e-120 436.8 315 68.9
Cpa.g.sc95.29 Carica papaya HOM05D004681 ORTHO05D005541 1.4e-120 436.8 316 69.3
Ciclev10008916m.g Citrus clementina HOM05D004681 ORTHO05D005541 1.2e-119 433.7 315 69.8
Dinv25404 Davidia involucrata HOM05D004681 ORTHO05D005541 2.6e-119 432.6 315 71.1
SalBow7G3904 Salvia bowleyana HOM05D004681 ORTHO05D005541 2.6e-119 432.6 316 68.0
Gorai.004G025600 Gossypium raimondii HOM05D004681 ORTHO05D005541 1.3e-118 430.3 327 67.0
Prupe.1G079200 Prunus persica HOM05D004681 ORTHO05D005541 1.1e-117 427.2 313 67.1
Duzib170G0205 Durio zibethinus HOM05D004681 ORTHO05D005541 2.5e-117 426.0 316 68.0
Dinv26443 Davidia involucrata HOM05D004681 ORTHO05D005541 3.2e-117 425.6 292 72.9
Solyc07g009320.3 Solanum lycopersicum HOM05D004681 ORTHO05D005541 5.5e-117 424.9 316 68.0
Sopen07g005070 Solanum pennellii HOM05D004681 ORTHO05D005541 9.4e-117 424.1 316 68.0
Eucgr.C00132 Eucalyptus grandis HOM05D004681 ORTHO05D005541 2.7e-116 422.5 313 68.4
TWI63G0533 Tripterygium wilfordii HOM05D004681 ORTHO05D005541 8.0e-116 421.0 314 67.2
MSTRG.10452 Avicennia marina HOM05D004681 ORTHO05D005541 5.2e-115 418.3 316 66.1
PGSC0003DMG400008514 Solanum tuberosum HOM05D004681 ORTHO05D005541 6.7e-115 417.9 316 66.8
RcHm_v2.0_Chr4g0400191 Rosa chinensis HOM05D004681 ORTHO05D005541 3.3e-114 415.6 314 65.9
SalBow7G0268 Salvia bowleyana HOM05D004681 ORTHO05D005541 2.2e-113 412.9 334 63.8
Peaxi162Scf00324g00718 Petunia axillaris HOM05D004681 ORTHO05D005541 3.7e-113 412.1 316 65.5
FAN22G1928 Fragaria x ananassa HOM05D004681 ORTHO05D005541 2.4e-112 409.5 317 64.4
FAN12G2798 Fragaria x ananassa HOM05D004681 ORTHO05D005541 2.0e-111 406.4 316 64.2
Manes.04G060300 Manihot esculenta HOM05D004681 ORTHO05D005541 2.6e-111 406.0 316 64.2
Manes.14G161401 Manihot esculenta HOM05D004681 ORTHO05D005541 2.6e-111 406.0 317 65.3
FvH4_4g07590 Fragaria vesca HOM05D004681 ORTHO05D005541 5.9e-111 404.8 317 64.0
CAN.G1668.9 Capsicum annuum HOM05D004681 ORTHO05D005541 1.3e-110 403.7 316 65.5
ClCG06G013520 Citrullus lanatus HOM05D004681 ORTHO05D005541 1.3e-110 403.7 311 65.6
SGA_v2.0_scaffold41G15864 Striga asiatica HOM05D004681 ORTHO05D005541 1.7e-110 403.3 316 64.9
Nitab4.5_0010281g0010 Nicotiana tabacum HOM05D004681 ORTHO05D005541 8.5e-110 401.0 316 64.6
Oeu000976.1 Olea europaea HOM05D004681 ORTHO05D005541 8.5e-110 401.0 316 65.5
Sc14g0001370 Simmondsia chinensis HOM05D004681 ORTHO05D005541 1.5e-109 400.2 309 62.5
CANSAT11G1051 Cannabis sativa HOM05D004681 ORTHO05D005541 3.2e-109 399.1 316 65.8
PGR044G2653 Punica granatum HOM05D004681 ORTHO05D005541 9.4e-109 397.5 317 64.4
RcHm_v2.0_Chr7g0191541 Rosa chinensis HOM05D004681 ORTHO05D005541 8.0e-108 394.4 313 62.6
Rhsim13G0200500 Rhododendron simsii HOM05D004681 ORTHO05D005541 1.8e-107 393.3 370 58.1
Aqoxy7G02735 Aquilegia oxysepala HOM05D004681 ORTHO05D005541 2.3e-107 392.9 314 61.1
HanXRQChr09g0266261 Helianthus annuus HOM05D004681 ORTHO05D005541 5.2e-107 391.7 313 63.3
Cc06_g22600 Coffea canephora HOM05D004681 ORTHO05D005541 6.7e-107 391.3 314 63.1
MELO3C017439.2 Cucumis melo HOM05D004681 ORTHO05D005541 6.7e-107 391.3 315 63.2
Potri.018G145508 Populus trichocarpa HOM05D004681 ORTHO05D005541 1.5e-106 390.2 287 69.0
Ah.09g230170 Amaranthus hybridus HOM05D004681 ORTHO05D005541 2.2e-105 386.3 318 63.5
MD13G1245600 Malus domestica HOM05D004681 ORTHO05D005541 6.3e-105 384.8 314 61.1
PSO079G0045 Papaver somniferum HOM05D004681 ORTHO05D005541 1.4e-104 383.6 320 61.6
Nitab4.5_0000074g0040 Nicotiana tabacum HOM05D004681 ORTHO05D005541 1.8e-104 383.3 288 66.7
FAN17G0253 Fragaria x ananassa HOM05D004681 ORTHO05D005541 2.4e-104 382.9 317 62.1
BcaB03g16704 Brassica carinata HOM05D004681 ORTHO05D005541 1.2e-103 380.6 312 62.8
Potri.006G077100 Populus trichocarpa HOM05D004681 ORTHO05D005541 4.5e-103 378.6 316 64.2
PSO423G0181 Papaver somniferum HOM05D004681 ORTHO05D005541 5.9e-103 378.3 320 60.9
Lsat_1_v5_gn_4_183080 Lactuca sativa HOM05D004681 ORTHO05D005541 2.2e-102 376.3 317 63.1
Hund09046 Selenicereus undatus HOM05D004681 ORTHO05D005541 2.2e-102 376.3 320 60.6
AUR62033246 Chenopodium quinoa HOM05D004681 ORTHO05D005541 5.0e-102 375.2 323 59.8
CsaV3_1G031790 Cucumis sativus L. HOM05D004681 ORTHO05D005541 6.5e-102 374.8 314 61.8
Thhalv10022785m.g Eutrema salsugineum HOM05D004681 ORTHO05D005541 1.1e-101 374.0 313 61.3
AL3G52840 Arabidopsis lyrata HOM05D004681 ORTHO05D005541 2.5e-101 372.9 316 60.8
BcaB07g31622 Brassica carinata HOM05D004681 ORTHO05D005541 4.2e-101 372.1 316 59.5
Sp3g32480 Schrenkiella parvula HOM05D004681 ORTHO05D005541 4.2e-101 372.1 316 59.8
Sabra06G0058400 Salix brachista HOM05D004681 ORTHO05D005541 9.4e-101 370.9 340 60.6
Glyma.15G164000 Glycine max HOM05D004681 ORTHO05D005541 2.7e-100 369.4 313 62.0
EL10Ac8g18317 Beta vulgaris HOM05D004681 ORTHO05D005541 3.6e-100 369.0 318 59.4
A09p12190 Brassica napus HOM05D004681 ORTHO05D005541 6.1e-100 368.2 316 59.2
BraA09t36865Z Brassica rapa HOM05D004681 ORTHO05D005541 6.1e-100 368.2 312 60.3
SGA_v2.0_scaffold21G09637 Striga asiatica HOM05D004681 ORTHO05D005541 8.0e-100 367.9 315 62.2
unitig_578.g16069 Utricularia gibba HOM05D004681 ORTHO05D005541 1.8e-99 366.7 316 59.8
BcaC06g36518 Brassica carinata HOM05D004681 ORTHO05D005541 6.8e-99 364.8 312 60.6
BcaC04g22869 Brassica carinata HOM05D004681 ORTHO05D005541 8.8e-99 364.4 316 58.9
Carub.0003s3332 Capsella rubella HOM05D004681 ORTHO05D005541 8.8e-99 364.4 316 59.2
Lj7A127G13 Lonicera japonica HOM05D004681 ORTHO05D005541 8.8e-99 364.4 268 67.2
CARHR109600 Cardamine hirsuta HOM05D004681 ORTHO05D005541 1.5e-98 363.6 316 59.2
ECA232G3088 Erigeron canadensis HOM05D004681 ORTHO05D005541 2.0e-98 363.2 315 60.6
Migut.L01897 Erythranthe guttata HOM05D004681 ORTHO05D005541 2.6e-98 362.8 316 59.8
BolC9t54347H Brassica oleracea HOM05D004681 ORTHO05D005541 9.8e-98 360.9 317 58.4
CSS0025965 Camellia sinensis var. sinensis HOM05D004681 ORTHO05D005541 9.8e-98 360.9 314 61.1
C09p14440 Brassica napus HOM05D004681 ORTHO05D005541 1.7e-97 360.1 312 59.0
Glyma.09G057900 Glycine max HOM05D004681 ORTHO05D005541 2.2e-97 359.8 314 61.1
THA.LOC104819968 Tarenaya hassleriana HOM05D004681 ORTHO05D005541 1.8e-96 356.7 317 59.3
Phvul.003G142900 Phaseolus vulgaris HOM05D004681 ORTHO05D005541 3.1e-96 355.9 310 59.4
CSS0001946 Camellia sinensis var. sinensis HOM05D004681 ORTHO05D005541 4.1e-96 355.5 232 73.3
Aa31LG8G16140 Aethionema arabicum HOM05D004681 ORTHO05D005541 2.0e-95 353.2 313 57.5
VMungo1215G0406 Vigna mungo HOM05D004681 ORTHO05D005541 2.7e-95 352.8 310 58.1
COL.COLO4_29315 Corchorus olitorius HOM05D004681 ORTHO05D005541 3.5e-95 352.4 268 68.7
AT2G19080 Arabidopsis thaliana HOM05D004681 ORTHO05D005541 5.9e-95 351.7 316 58.2
MBI13_g31546_MAGBIO Magnolia biondii HOM05D004681 ORTHO05D005541 2.3e-94 349.7 318 58.2
Sed0004411 Sechium edule HOM05D004681 ORTHO05D005541 1.9e-93 346.7 260 65.0
HanXRQChr10g0297571 Helianthus annuus HOM05D004681 ORTHO05D005541 4.7e-92 342.0 355 53.2
A07p01650 Brassica napus HOM05D004681 ORTHO05D005541 1.8e-91 340.1 312 57.4
BraA07t27967Z Brassica rapa HOM05D004681 ORTHO05D005541 1.8e-91 340.1 312 57.4
C07p03410 Brassica napus HOM05D004681 ORTHO05D005541 4.0e-91 339.0 312 57.1
BolC7t40740H Brassica oleracea HOM05D004681 ORTHO05D005541 4.0e-91 339.0 312 57.1
HPP92_004723 Vanilla planifolia HOM05D004681 ORTHO05D005541 3.4e-90 335.9 319 55.5
arahy.Tifrunner.gnm1.ann1.K04ERL Arachis hypogaea HOM05D004681 ORTHO05D005541 2.2e-89 333.2 311 56.9
Glyma.13G099400 Glycine max HOM05D004681 ORTHO05D005541 3.7e-89 332.4 311 57.6
arahy.Tifrunner.gnm1.ann1.L4KBSE Arachis hypogaea HOM05D004681 ORTHO05D005541 4.9e-89 332.0 311 56.6
VMungo1309G2393 Vigna mungo HOM05D004681 ORTHO05D005541 4.5e-87 325.5 312 55.8
Medtr4g127630 Medicago truncatula HOM05D004681 ORTHO05D005541 1.3e-86 323.9 313 56.5
arahy.Tifrunner.gnm1.ann1.KM341F Arachis hypogaea HOM05D004681 ORTHO05D005541 1.7e-86 323.6 316 56.3
Glyma.17G060700 Glycine max HOM05D004681 ORTHO05D005541 1.7e-86 323.6 312 56.4
Lalb_Chr15g0084091 Lupinus albus HOM05D004681 ORTHO05D005541 3.3e-85 319.3 312 56.1
Ca_21245_v3 Cicer arietinum L. HOM05D004410 ORTHO05D006134 5.6e-85 318.5 306 55.6
Lj6g0005497 Lotus japonicus HOM05D004681 ORTHO05D005541 7.3e-85 318.2 311 56.6
TPR.G5388 Trifolium pratense HOM05D004681 ORTHO05D005541 2.8e-84 316.2 313 55.3
Phvul.009G237800 Phaseolus vulgaris HOM05D004681 ORTHO05D005541 1.0e-83 314.3 312 54.5
Psat0s736g0040 Pisum sativum HOM05D004681 ORTHO05D005541 1.4e-83 313.9 310 55.5
Lj4g0016729 Lotus japonicus HOM05D004681 ORTHO05D005541 4.0e-83 312.4 309 53.4
Lalb_Chr12g0199511 Lupinus albus HOM05D004681 ORTHO05D005541 1.7e-81 307.0 314 52.5
arahy.Tifrunner.gnm1.ann1.LX7F61 Arachis hypogaea HOM05D004681 ORTHO05D005541 2.9e-81 306.2 316 54.4
Medtr2g036910 Medicago truncatula HOM05D004681 ORTHO05D005541 2.7e-79 299.7 311 52.7
Ca_02042_v3 Cicer arietinum L. HOM05D004681 ORTHO05D005541 6.0e-79 298.5 312 53.5
Os06g0168000 Oryza sativa ssp. japonica HOM05D004681 ORTHO05D005541 1.3e-78 297.4 318 50.9
ATR0626G278 Amborella trichopoda HOM05D004681 ORTHO05D005541 6.6e-78 295.0 316 50.0
AUR62021331 Chenopodium quinoa HOM05D004681 ORTHO05D005541 6.6e-78 295.0 322 50.6
Nn2g12745 Nelumbo nucifera HOM05D004681 ORTHO05D005541 8.0e-76 288.1 317 52.4
DCAR_019823 Daucus carota HOM05D004410 ORTHO05D006134 2.6e-74 283.1 321 51.7
SHI02877 Sapria himalayana HOM05D004681 ORTHO05D005541 1.2e-71 274.2 475 38.3
TPR.G9028 Trifolium pratense HOM05D004681 ORTHO05D005541 1.6e-71 273.9 311 50.8
HanXRQChr04g0105751 Helianthus annuus HOM05D004681 ORTHO05D005541 1.0e-70 271.2 186 67.7
TAR636G1425 Trochodendron aralioides HOM05D004681 ORTHO05D005541 1.7e-70 270.4 221 65.2
Potri.018G147625 Populus trichocarpa HOM05D004681 ORTHO05D005541 2.5e-69 266.5 321 48.9
CDE06G1906 Ceratophyllum demersum HOM05D004681 ORTHO05D005541 3.6e-68 262.7 313 48.6
Psat1g145840 Pisum sativum HOM05D004681 ORTHO05D005541 5.8e-66 255.4 205 62.9
Haze_21984 Corylus avellana HOM05D004681 ORTHO05D005541 6.4e-65 251.9 206 65.0
vmacro23062 Vaccinium macrocarpon HOM05D004681 ORTHO05D005541 3.2e-64 249.6 272 51.5
RcHm_v2.0_Chr7g0191431 Rosa chinensis HOM05D004681 ORTHO05D005541 4.1e-64 249.2 293 49.8
Pp3c12_12510 Physcomitrium patens HOM05D004681 ORTHO05D005541 2.3e-54 216.9 301 41.2
Pp3c4_10660 Physcomitrium patens HOM05D004681 ORTHO05D005541 1.9e-53 213.8 316 38.3
Zm00001eb375500 Zea mays HOM05D004681 ORTHO05D005541 6.2e-52 208.8 182 57.1
Mapoly0001s0301 Marchantia polymorpha HOM05D004681 ORTHO05D005541 7.6e-50 201.8 316 38.6
SGA_v2.0_scaffold41G15854 Striga asiatica HOM05D004681 ORTHO05D005541 8.4e-49 198.4 264 49.2
CAN.G609.4 Capsicum annuum HOM05D004681 ORTHO05D005541 3.9e-46 189.5 140 66.4
AagrBONN_evm.TU.Sc2ySwM_228.4196 Anthoceros agrestis HOM05D004681 ORTHO05D005541 5.3e-43 179.1 302 36.1
Haze_21988 Corylus avellana HOM05D004681 ORTHO05D005541 4.0e-35 152.9 109 72.5
SMO358G0154 Selaginella moellendorffii HOM05D004681 ORTHO05D005541 4.0e-35 152.9 315 33.7
Potri.001G065336 Populus trichocarpa HOM05D004681 ORTHO05D005541 6.9e-35 152.1 112 68.8
Ca_02046_v3 Cicer arietinum L. HOM05D004681 ORTHO05D005541 4.9e-33 146.0 221 44.8
CAN.G497.61 Capsicum annuum HOM05D004681 ORTHO05D005541 2.1e-31 140.6 115 60.9
CAN.G266.1 Capsicum annuum HOM05D004681 ORTHO05D005541 2.4e-27 127.1 155 45.8
Haze_21985 Corylus avellana HOM05D004681 ORTHO05D005541 1.1e-24 118.2 106 60.4
Potri.018G145080 Populus trichocarpa HOM05D004681 ORTHO05D005541 1.2e-23 114.8 167 45.5
Potri.001G064609 Populus trichocarpa HOM05D004681 ORTHO05D005541 2.7e-23 113.6 78 70.5
Potri.001G065000 Populus trichocarpa HOM05D004681 ORTHO05D005541 3.1e-19 100.1 97 58.8
HanXRQChr04g0105741 Helianthus annuus HOM05D004681 ORTHO05D005541 7.7e-18 95.5 107 53.3
SMO367G0296 Selaginella moellendorffii HOM05D004681 ORTHO05D005541 2.9e-17 93.6 245 31.4
CBR_g39348 Chara braunii HOM05D000019 ORTHO05D000002 3.8e-17 93.2 188 32.4
vmacro04071 Vaccinium macrocarpon HOM05D004681 ORTHO05D005541 4.6e-15 86.3 110 51.8
QL05p087685 Quercus lobata HOM05D004681 ORTHO05D005541 2.0e-13 80.9 192 30.2
MELO3C029108.2 Cucumis melo HOM05D004681 ORTHO05D005541 2.5e-08 63.9 46 58.7
SMO367G1182 Selaginella moellendorffii HOM05D004681 ORTHO05D005541 5.5e-08 62.8 174 29.3
AUR62034598 Chenopodium quinoa HOM05D022644 ORTHO05D003557 5.1e-06 56.2 52 48.1


User provided reference genes

Program Settings