Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.08G031400 Carya illinoinensis HOM05D003453 ORTHO05D004154 6.0e-128 461.5 351 100.0
Prupe.1G072100 Prunus persica HOM05D003453 ORTHO05D004154 1.1e-86 324.3 353 79.0
MD16G1245200 Malus domestica HOM05D003453 ORTHO05D004154 1.3e-85 320.9 352 78.4
COL.COLO4_37566 Corchorus olitorius HOM05D003453 ORTHO05D004154 6.2e-85 318.5 338 80.5
Lalb_Chr07g0180741 Lupinus albus HOM05D003453 ORTHO05D004154 6.2e-85 318.5 355 79.7
MD13G1241200 Malus domestica HOM05D003453 ORTHO05D004154 6.9e-84 315.1 354 77.1
Lalb_Chr13g0299841 Lupinus albus HOM05D003453 ORTHO05D004154 4.5e-83 312.4 354 78.0
FAN22G1784 Fragaria x ananassa HOM05D003453 ORTHO05D004154 1.3e-82 310.8 355 70.1
FAN12G0296 Fragaria x ananassa HOM05D003453 ORTHO05D004154 2.2e-82 310.1 358 68.4
Haze_22047 Corylus avellana HOM05D003453 ORTHO05D004154 2.5e-81 306.6 356 61.8
VMungo1215G2556 Vigna mungo HOM05D003453 ORTHO05D004154 1.6e-80 303.9 353 77.1
Thecc.09G192200 Theobroma cacao HOM05D003453 ORTHO05D004154 1.0e-79 301.2 356 73.6
Ciclev10008785m.g Citrus clementina HOM05D003453 ORTHO05D004154 1.6e-77 293.9 357 73.7
FAN07G0750 Fragaria x ananassa HOM05D003453 ORTHO05D004154 2.1e-77 293.5 355 69.3
FvH4_4g06910 Fragaria vesca HOM05D003453 ORTHO05D004154 2.4e-76 290.0 358 68.4
FAN17G0675 Fragaria x ananassa HOM05D003453 ORTHO05D004154 4.1e-76 289.3 355 69.0
RcHm_v2.0_Chr4g0398811 Rosa chinensis HOM05D003453 ORTHO05D004154 9.0e-76 288.1 357 68.1
AL3G48980 Arabidopsis lyrata HOM05D003453 ORTHO05D004154 1.5e-75 287.3 327 79.8
Sp3g32700 Schrenkiella parvula HOM05D003453 ORTHO05D004154 2.0e-75 287.0 327 79.8
AT2G19330 Arabidopsis thaliana HOM05D003453 ORTHO05D004154 2.6e-75 286.6 327 79.8
Phvul.003G139800 Phaseolus vulgaris HOM05D003453 ORTHO05D004154 5.8e-75 285.4 355 75.5
Carub.0003s3355 Capsella rubella HOM05D003453 ORTHO05D004154 1.7e-74 283.9 327 79.2
Thhalv10022960m.g Eutrema salsugineum HOM05D003453 ORTHO05D004154 2.9e-74 283.1 327 78.6
Atru.chr7.914 Acer truncatum HOM05D003453 ORTHO05D004154 5.0e-74 282.3 367 70.0
CARHR109780 Cardamine hirsuta HOM05D003453 ORTHO05D004154 8.4e-74 281.6 327 79.8
Duzib150G0655 Durio zibethinus HOM05D003453 ORTHO05D004154 1.4e-73 280.8 353 71.7
PGR044G1644 Punica granatum HOM05D003453 ORTHO05D004154 2.5e-73 280.0 330 69.4
BcaB03g16722 Brassica carinata HOM05D003453 ORTHO05D004154 4.2e-73 279.3 327 78.9
A07p01420 Brassica napus HOM05D003453 ORTHO05D004154 4.2e-73 279.3 327 78.6
C07p02870 Brassica napus HOM05D003453 ORTHO05D004154 4.2e-73 279.3 327 78.6
BolC7t40684H Brassica oleracea HOM05D003453 ORTHO05D004154 4.2e-73 279.3 327 78.6
BraA07t27936Z Brassica rapa HOM05D003453 ORTHO05D004154 4.2e-73 279.3 327 78.6
Duzib168G0040 Durio zibethinus HOM05D003453 ORTHO05D004154 4.2e-73 279.3 350 70.3
Gohir.A13G182300 Gossypium hirsutum HOM05D003453 ORTHO05D004154 1.3e-71 274.2 330 76.1
CiPaw.07G199200 Carya illinoinensis HOM05D003453 ORTHO05D004154 1.9e-70 270.4 286 82.5
Gorai.013G211100 Gossypium raimondii HOM05D003453 ORTHO05D004154 3.3e-70 269.6 330 75.8
Medtr4g127120 Medicago truncatula HOM05D003453 ORTHO05D004154 3.3e-70 269.6 352 67.3
Glyma.17G057600 Glycine max HOM05D003453 ORTHO05D004154 2.2e-69 266.9 330 73.9
Oeu035455.1 Olea europaea HOM05D003453 ORTHO05D004154 6.3e-69 265.4 339 68.1
arahy.Tifrunner.gnm1.ann1.JP7J3T Arachis hypogaea HOM05D003453 ORTHO05D004154 8.2e-69 265.0 358 65.6
Oeu043899.1 Olea europaea HOM05D003453 ORTHO05D004154 8.2e-69 265.0 351 64.4
Nn8g40645 Nelumbo nucifera HOM05D003453 ORTHO05D004154 1.4e-68 264.2 352 63.9
TWI34G1803 Tripterygium wilfordii HOM05D003453 ORTHO05D004154 1.8e-68 263.8 355 72.4
CSS0013411 Camellia sinensis var. sinensis HOM05D003453 ORTHO05D004154 4.1e-68 262.7 328 68.3
Eucgr.C00085 Eucalyptus grandis HOM05D003453 ORTHO05D004154 4.1e-68 262.7 305 76.7
Gorai.012G008100 Gossypium raimondii HOM05D003453 ORTHO05D004154 4.1e-68 262.7 351 65.8
Lj4g0007200 Lotus japonicus HOM05D003453 ORTHO05D004154 4.1e-68 262.7 355 73.2
TWI32G0581 Tripterygium wilfordii HOM05D003453 ORTHO05D004154 1.5e-67 260.8 323 75.2
Aa31LG8G16370 Aethionema arabicum HOM05D003453 ORTHO05D004154 2.0e-67 260.4 335 71.6
Migut.J00777 Erythranthe guttata HOM05D003453 ORTHO05D004154 2.0e-67 260.4 369 63.7
Gohir.D04G006700 Gossypium hirsutum HOM05D003453 ORTHO05D004154 2.0e-67 260.4 351 69.2
CSS0032765 Camellia sinensis var. sinensis HOM05D003453 ORTHO05D004154 7.7e-67 258.5 361 65.1
Manes.14G161200 Manihot esculenta HOM05D003453 ORTHO05D004154 6.5e-66 255.4 357 70.3
Gohir.A05G408700 Gossypium hirsutum HOM05D003453 ORTHO05D004154 7.2e-65 251.9 347 69.7
Duzib170G0719 Durio zibethinus HOM05D003453 ORTHO05D004154 4.6e-64 249.2 351 69.8
Cpa.g.sc115.61 Carica papaya HOM05D003453 ORTHO05D004154 6.1e-64 248.8 351 66.7
Psat4g014280 Pisum sativum HOM05D003453 ORTHO05D004154 6.1e-64 248.8 354 51.1
TPR.G5414 Trifolium pratense HOM05D003453 ORTHO05D004154 2.3e-63 246.9 358 62.6
THA.LOC104814639 Tarenaya hassleriana HOM05D003453 ORTHO05D004154 3.0e-63 246.5 326 73.0
Potri.018G139700 Populus trichocarpa HOM05D003453 ORTHO05D004154 3.9e-63 246.1 369 69.4
Cc06_g17230 Coffea canephora HOM05D003453 ORTHO05D004154 6.7e-63 245.4 313 66.8
Actinidia38507 Actinidia chinensis HOM05D003453 ORTHO05D004154 1.1e-62 244.6 344 63.4
Ca_21264_v3 Cicer arietinum L. HOM05D003453 ORTHO05D004154 2.0e-62 243.8 362 61.6
SalBow3G1932 Salvia bowleyana HOM05D003453 ORTHO05D004154 2.0e-62 243.8 351 66.7
TAR625G0633 Trochodendron aralioides HOM05D003453 ORTHO05D004154 5.7e-62 242.3 336 68.5
Oeu044656.1 Olea europaea HOM05D003453 ORTHO05D004154 7.4e-62 241.9 326 66.3
ClCG11G011550 Citrullus lanatus HOM05D003453 ORTHO05D004154 6.3e-61 238.8 334 68.3
Potri.006G072700 Populus trichocarpa HOM05D003453 ORTHO05D004154 8.2e-61 238.4 370 65.1
Lalb_Chr23g0276711 Lupinus albus HOM05D003453 ORTHO05D004154 1.2e-59 234.6 333 66.1
Hma1.2p1_0235F.1_g098820 Hydrangea macrophylla HOM05D003453 ORTHO05D004154 3.4e-59 233.0 301 73.1
CsaV3_2G008970 Cucumis sativus L. HOM05D003453 ORTHO05D004154 4.5e-59 232.6 363 63.6
Dinv25469 Davidia involucrata HOM05D003453 ORTHO05D004154 1.3e-58 231.1 351 63.0
Glyma.09G061500 Glycine max HOM05D003453 ORTHO05D004154 2.2e-58 230.3 345 69.3
Sed0020380 Sechium edule HOM05D003453 ORTHO05D004154 5.0e-58 229.2 326 70.2
Glyma.15G167800 Glycine max HOM05D003453 ORTHO05D004154 8.5e-58 228.4 330 71.2
Lj6g0025589 Lotus japonicus HOM05D003453 ORTHO05D004154 1.4e-57 227.6 363 66.1
Aqoxy7G02898 Aquilegia oxysepala HOM05D003453 ORTHO05D004154 2.5e-57 226.9 319 59.2
QL02p064658 Quercus lobata HOM05D003453 ORTHO05D004154 2.5e-57 226.9 353 68.6
Sabra06G0054100 Salix brachista HOM05D003453 ORTHO05D004154 2.5e-57 226.9 368 64.7
Eucgr.C00084 Eucalyptus grandis HOM05D003453 ORTHO05D004154 3.2e-57 226.5 305 72.1
Sabra18G0114200 Salix brachista HOM05D003453 ORTHO05D004154 3.2e-57 226.5 327 70.6
CANSAT11G2669 Cannabis sativa HOM05D003453 ORTHO05D004154 9.4e-57 224.9 372 65.3
GSVIVG01029273001 Vitis vinifera HOM05D003453 ORTHO05D004154 1.2e-56 224.6 313 69.6
CsaV3_1G032040 Cucumis sativus L. HOM05D003453 ORTHO05D004154 2.1e-56 223.8 332 69.0
Phvul.009G234500 Phaseolus vulgaris HOM05D003453 ORTHO05D004154 2.1e-56 223.8 331 68.9
Eucgr.C02218 Eucalyptus grandis HOM05D003453 ORTHO05D004154 1.8e-55 220.7 353 64.3
EL10Ac8g19292 Beta vulgaris HOM05D003453 ORTHO05D004154 8.8e-55 218.4 329 60.8
BraA03t14715Z Brassica rapa HOM05D003453 ORTHO05D004154 1.1e-54 218.0 341 58.1
SHI03070 Sapria himalayana HOM05D003453 ORTHO05D004154 1.1e-54 218.0 329 54.1
Ah.09g228510 Amaranthus hybridus HOM05D003453 ORTHO05D004154 2.6e-54 216.9 318 69.2
DCAR_020142 Daucus carota HOM05D003453 ORTHO05D004154 2.6e-54 216.9 364 58.5
arahy.Tifrunner.gnm1.ann1.N816GG Arachis hypogaea HOM05D003453 ORTHO05D004154 3.3e-54 216.5 295 73.6
DCAR_009479 Daucus carota HOM05D003453 ORTHO05D004154 3.7e-53 213.0 363 57.3
arahy.Tifrunner.gnm1.ann1.3E2B2N Arachis hypogaea HOM05D003453 ORTHO05D004154 4.8e-53 212.6 295 72.5
Thhalv10027502m.g Eutrema salsugineum HOM05D003453 ORTHO05D004154 5.3e-52 209.1 327 64.8
A03p59300 Brassica napus HOM05D003453 ORTHO05D004154 9.1e-52 208.4 327 62.4
BraA03t14987Z Brassica rapa HOM05D003453 ORTHO05D004154 9.1e-52 208.4 327 62.4
arahy.Tifrunner.gnm1.ann1.SX1TLQ Arachis hypogaea HOM05D003453 ORTHO05D004154 2.6e-51 206.8 356 60.4
AT4G29880 Arabidopsis thaliana HOM05D003453 ORTHO05D004154 5.9e-51 205.7 327 65.7
unitig_578.g15728 Utricularia gibba HOM05D003453 ORTHO05D004154 1.3e-50 204.5 326 53.1
THA.LOC104817769 Tarenaya hassleriana HOM05D003453 ORTHO05D004154 2.2e-50 203.8 352 61.6
Carub.0004s1475 Capsella rubella HOM05D003453 ORTHO05D004154 2.9e-50 203.4 327 60.2
Actinidia29965 Actinidia chinensis HOM05D003453 ORTHO05D004154 5.0e-50 202.6 165 75.2
MELO3C003949.2 Cucumis melo HOM05D003453 ORTHO05D004154 8.5e-50 201.8 372 59.7
TPR.G2523 Trifolium pratense HOM05D003453 ORTHO05D004154 2.5e-49 200.3 345 65.2
C07p54660 Brassica napus HOM05D003453 ORTHO05D004154 4.2e-49 199.5 334 55.4
BolC7t45955H Brassica oleracea HOM05D003453 ORTHO05D004154 4.2e-49 199.5 334 55.4
CDE02G3632 Ceratophyllum demersum HOM05D003453 ORTHO05D004154 9.4e-49 198.4 347 60.5
AL7G22370 Arabidopsis lyrata HOM05D003453 ORTHO05D004154 2.7e-48 196.8 327 63.6
ClCG06G013840 Citrullus lanatus HOM05D003453 ORTHO05D004154 2.7e-48 196.8 290 65.5
VMungo1309G3166 Vigna mungo HOM05D003453 ORTHO05D004154 3.6e-48 196.4 337 66.5
Manes.06G017500 Manihot esculenta HOM05D003453 ORTHO05D004154 6.1e-48 195.7 348 61.8
SGA_v2.0_scaffold31G12781 Striga asiatica HOM05D003453 ORTHO05D004154 2.3e-47 193.7 353 56.9
Hund24523 Selenicereus undatus HOM05D003453 ORTHO05D004154 5.2e-47 192.6 306 62.7
CDE05G1169 Ceratophyllum demersum HOM05D003453 ORTHO05D004154 1.5e-46 191.0 342 48.5
PSO063G7373 Papaver somniferum HOM05D003453 ORTHO05D004154 5.7e-46 189.1 381 58.5
BcaC06g36564 Brassica carinata HOM05D003453 ORTHO05D004154 7.4e-46 188.7 250 80.8
PSO170G1153 Papaver somniferum HOM05D003453 ORTHO05D004154 7.4e-46 188.7 331 64.4
CDE05G3189 Ceratophyllum demersum HOM05D003453 ORTHO05D004154 1.3e-45 188.0 342 55.8
Thhalv10025419m.g Eutrema salsugineum HOM05D003453 ORTHO05D004154 1.7e-45 187.6 329 62.3
Medtr2g038380 Medicago truncatula HOM05D003453 ORTHO05D004154 6.3e-45 185.7 350 62.9
Peaxi162Scf00006g02914 Petunia axillaris HOM05D003453 ORTHO05D004154 6.3e-45 185.7 350 59.7
DCAR_018009 Daucus carota HOM05D003453 ORTHO05D004154 1.1e-44 184.9 361 56.2
Sed0024940 Sechium edule HOM05D003453 ORTHO05D004154 1.4e-44 184.5 321 58.9
CARHR233550 Cardamine hirsuta HOM05D003453 ORTHO05D004154 7.0e-44 182.2 327 61.8
Oeu012385.1 Olea europaea HOM05D003453 ORTHO05D004154 1.2e-43 181.4 312 45.8
PSO063G4618 Papaver somniferum HOM05D003453 ORTHO05D004154 2.6e-43 180.3 331 63.4
A03p56450 Brassica napus HOM05D003453 ORTHO05D004154 7.7e-43 178.7 337 58.2
CARHR237770 Cardamine hirsuta HOM05D003453 ORTHO05D004154 1.0e-42 178.3 327 61.5
AT4G26050 Arabidopsis thaliana HOM05D003453 ORTHO05D004154 1.5e-41 174.5 330 60.9
BcaC06g32772 Brassica carinata HOM05D003453 ORTHO05D004154 3.2e-41 173.3 340 57.4
MBI16_g09350_MAGBIO Magnolia biondii HOM05D003453 ORTHO05D004154 4.2e-41 172.9 338 55.0
AL7G26940 Arabidopsis lyrata HOM05D003453 ORTHO05D004154 9.4e-41 171.8 327 60.2
HanXRQChr09g0245371 Helianthus annuus HOM05D003453 ORTHO05D004154 9.4e-41 171.8 326 60.7
Ca_02128_v3 Cicer arietinum L. HOM05D003453 ORTHO05D004154 2.1e-40 170.6 331 61.9
A01p17310 Brassica napus HOM05D003453 ORTHO05D004154 2.7e-40 170.2 332 59.9
BraA01t01686Z Brassica rapa HOM05D003453 ORTHO05D004154 2.7e-40 170.2 332 59.9
ECA240G3569 Erigeron canadensis HOM05D003453 ORTHO05D004154 2.7e-40 170.2 326 64.1
BolC1t02107H Brassica oleracea HOM05D003453 ORTHO05D004154 3.6e-40 169.9 329 60.8
Gohir.D13G185000 Gossypium hirsutum HOM05D003453 ORTHO05D004154 3.6e-40 169.9 268 72.4
Lsat_1_v5_gn_7_55120 Lactuca sativa HOM05D003453 ORTHO05D004154 6.1e-40 169.1 328 62.8
Psat1g142960 Pisum sativum HOM05D003453 ORTHO05D004154 3.0e-39 166.8 346 61.3
BcaNung00498 Brassica carinata HOM05D003453 ORTHO05D004154 6.8e-39 165.6 319 56.1
HanXRQChr05g0142141 Helianthus annuus HOM05D003453 ORTHO05D004154 1.5e-38 164.5 333 52.3
Sc08g0004730 Simmondsia chinensis HOM05D003453 ORTHO05D004154 1.5e-38 164.5 403 38.0
C01p21810 Brassica napus HOM05D003453 ORTHO05D004154 2.0e-38 164.1 307 62.2
HanXRQChr04g0103791 Helianthus annuus HOM05D003453 ORTHO05D004154 6.3e-37 159.1 343 60.1
Rhsim02G0202600 Rhododendron simsii HOM05D003453 ORTHO05D004154 1.1e-36 158.3 368 57.1
Rhsim03G0267900 Rhododendron simsii HOM05D003453 ORTHO05D004154 1.1e-36 158.3 307 62.2
Psat1g142440 Pisum sativum HOM05D003453 ORTHO05D004154 1.8e-36 157.5 356 59.3
Carub.0007s1491 Capsella rubella HOM05D003453 ORTHO05D004154 3.1e-36 156.8 327 51.7
AUR62027430 Chenopodium quinoa HOM05D003453 ORTHO05D004154 3.1e-36 156.8 322 42.5
Sed0001635 Sechium edule HOM05D003453 ORTHO05D004154 2.7e-35 153.7 270 53.7
Aa31LG2G20670 Aethionema arabicum HOM05D003453 ORTHO05D004154 5.9e-35 152.5 167 62.3
PGSC0003DMG400006458 Solanum tuberosum HOM05D003453 ORTHO05D004154 1.3e-34 151.4 321 59.8
Solyc12g017480.3 Solanum lycopersicum HOM05D003453 ORTHO05D004154 2.5e-33 147.1 321 55.1
Sopen12g008270 Solanum pennellii HOM05D003453 ORTHO05D004154 3.2e-33 146.7 321 55.1
Os04g0605300 Oryza sativa ssp. japonica HOM05D003453 ORTHO05D004154 5.5e-33 146.0 326 55.8
BolC7t46200H Brassica oleracea HOM05D003453 ORTHO05D004154 1.6e-32 144.4 327 54.4
C07p57310 Brassica napus HOM05D003453 ORTHO05D004154 3.6e-32 143.3 327 54.1
Lju50A41T23 Lonicera japonica HOM05D003453 ORTHO05D004154 8.0e-32 142.1 151 63.6
Lju50A42T20 Lonicera japonica HOM05D003453 ORTHO05D004154 8.0e-32 142.1 151 63.6
Lju432C7T0 Lonicera japonica HOM05D003453 ORTHO05D004154 8.8e-31 138.7 151 62.9
Sp7g27690 Schrenkiella parvula HOM05D003453 ORTHO05D004154 1.3e-29 134.8 327 53.8
Zm00001eb071570 Zea mays HOM05D003453 ORTHO05D004154 4.9e-29 132.9 329 55.6
Aa31LG3G390 Aethionema arabicum HOM05D003453 ORTHO05D004154 1.4e-28 131.3 338 42.0
AUR62031265 Chenopodium quinoa HOM05D003453 ORTHO05D004154 1.6e-27 127.9 216 53.7
ATR0580G242 Amborella trichopoda HOM05D003453 ORTHO05D004154 4.5e-27 126.3 339 49.3
ECA236G3452 Erigeron canadensis HOM05D003453 ORTHO05D004154 7.7e-27 125.6 327 52.0
Lsat_1_v5_gn_8_68380 Lactuca sativa HOM05D003453 ORTHO05D004154 1.0e-26 125.2 329 50.2
Nitab4.5_0001335g0020 Nicotiana tabacum HOM05D003453 ORTHO05D004154 1.7e-26 124.4 369 36.0
Actinidia29966 Actinidia chinensis HOM05D003453 ORTHO05D004154 8.0e-24 115.5 78 76.9
CDE04G2437 Ceratophyllum demersum HOM05D002648 ORTHO05D002899 3.0e-23 113.6 272 61.0
MSTRG.19360 Avicennia marina HOM05D003453 ORTHO05D004154 2.2e-21 107.5 97 54.6
BcaB08g34854 Brassica carinata HOM05D003453 ORTHO05D004154 4.9e-21 106.3 116 70.7
PGR018G0002 Punica granatum HOM05D003453 ORTHO05D004154 9.2e-20 102.1 349 45.8
PGR142G3132 Punica granatum HOM05D003453 ORTHO05D004154 9.2e-20 102.1 349 45.8
PGR142G4131 Punica granatum HOM05D003453 ORTHO05D004154 9.2e-20 102.1 349 45.8
MELO3C029529.2 Cucumis melo HOM05D003453 ORTHO05D004154 1.6e-19 101.3 82 63.4
SHI33663 Sapria himalayana HOM05D003453 ORTHO05D004154 8.6e-18 95.5 157 39.5
MBI14_g10728_MAGBIO Magnolia biondii HOM05D003453 ORTHO05D004154 1.9e-17 94.4 165 44.8
vmacro22287 Vaccinium macrocarpon HOM05D003453 ORTHO05D004154 1.9e-17 94.4 147 47.6
HPP92_010787 Vanilla planifolia HOM05D003453 ORTHO05D004154 2.0e-14 84.3 340 45.0
SpUn0235_0010 Schrenkiella parvula HOM05D003453 ORTHO05D004154 2.6e-14 84.0 181 63.0
ClCG06G013820 Citrullus lanatus HOM05D003453 ORTHO05D004154 2.5e-09 67.4 130 36.9
Sc14g0003130 Simmondsia chinensis HOM05D003453 ORTHO05D004154 4.0e-07 60.1 376 44.7
BraA07t29361Z Brassica rapa HOM05D003453 ORTHO05D042392 9.8e-06 55.5 48 64.6


User provided reference genes

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